CRYAA — 112 ClinVar variants
All ClinVar germline CRYAA variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 46 flagged for review →
6 Pathogenic · 2 Pathogenic/Likely pathogenic · 3 Likely pathogenic · 4 Conflicting · 15 Benign · 1 Benign/Likely benign · 29 Likely benign · 52 Uncertain significance
Full CRYAA gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 46
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
CRYAA p.Arg49Cys
Conflicting
Single submitter
congenital portosystemic shunt
Predictors lean, ClinVar uncertain 27
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
CRYAA p.Arg112His
Uncertain significance
Multiple submitters
cataract 9 multiple types
-
CRYAA p.Gln90Pro
Uncertain significance
Multiple submitters
cataract 9 multiple types
-
CRYAA p.Phe17Ser
Uncertain significance
Multiple submitters
cataract 9 multiple types
-
CRYAA p.Val56Met
Uncertain significance
Multiple submitters
cataract 9 multiple types
- CRYAA p.Ala155Thr Uncertain significance Single submitter
-
CRYAA p.Ala170Thr
Uncertain significance
Single submitter
cataract 9 multiple types
- CRYAA p.Arg112Cys Uncertain significance Single submitter
-
CRYAA p.Arg117Cys
Uncertain significance
Single submitter
cataract 9 multiple types
-
CRYAA p.Arg12His
Uncertain significance
Single submitter
cataract 9 multiple types
-
CRYAA p.Asp106Glu
Uncertain significance
Single submitter
cataract 9 multiple types
- CRYAA p.Asp24Asn Uncertain significance Single submitter
- CRYAA p.Asp67Glu Uncertain significance Single submitter
-
CRYAA p.Asp67His
Uncertain significance
Single submitter
cataract 9 multiple types
- CRYAA p.Gly108Ser Uncertain significance Single submitter
- CRYAA p.Gly137Ser Uncertain significance Single submitter
- CRYAA p.Ile110Leu Uncertain significance Single submitter
- CRYAA p.Ile146Thr Uncertain significance Single submitter
- CRYAA p.Ile73Val Uncertain significance Single submitter
-
CRYAA p.Leu133Pro
Uncertain significance
Single submitter
cataract 9 multiple types
- CRYAA p.Leu40Pro Uncertain significance Single submitter
-
CRYAA p.Phe80Ser
Uncertain significance
Single submitter
cataract 9 multiple types
- CRYAA p.Pro82Arg Uncertain significance Single submitter
-
CRYAA p.Pro82Leu
Uncertain significance
Single submitter
cataract 9 multiple types
-
CRYAA p.Ser169Leu
Uncertain significance
Single submitter
cataract 9 multiple types
- CRYAA p.Ser66Ala Uncertain significance Single submitter
- CRYAA p.Tyr109Ser Uncertain significance Single submitter
-
CRYAA p.Val161Met
Uncertain significance
Single submitter
cataract 9 multiple types
Predictors split 18
The independent predictors disagree with each other — read with care.
-
CRYAA p.Ala155Asp
Uncertain significance
Multiple submitters
cataract 9 multiple types
-
CRYAA p.Arg119Cys
Uncertain significance
Multiple submitters
cataract 9 multiple types
-
CRYAA p.Arg21Gln
Pathogenic
Multiple submitters
cataract 9 multiple types
-
CRYAA p.Arg68Trp
Uncertain significance
Multiple submitters
cataract 9 multiple types
-
CRYAA p.Ser172Pro
Uncertain significance
Multiple submitters
cataract 9 multiple types
-
CRYAA p.Arg163Gln
Uncertain significance
Single submitter
cataract 9 multiple types
- CRYAA p.Arg49His Uncertain significance Single submitter
-
CRYAA p.Arg54Pro
Conflicting
Single submitter
cataract 9 multiple types
-
CRYAA p.Asp125Glu
Uncertain significance
Single submitter
cataract 9 multiple types
-
CRYAA p.Gln25His
Uncertain significance
Single submitter
cataract 9 multiple types
-
CRYAA p.Gln6Arg
Uncertain significance
Single submitter
cataract 9 multiple types
-
CRYAA p.Glu156Lys
Uncertain significance
Single submitter
cataract 9 multiple types
- CRYAA p.Glu165Gly Uncertain significance Single submitter
-
CRYAA p.Leu52Phe
Conflicting
Single submitter
cataract 9 multiple types
- CRYAA p.Phe53Leu Uncertain significance Single submitter
- CRYAA p.Ser111Thr Uncertain significance Single submitter
- CRYAA p.Ser127Leu Uncertain significance Single submitter
- CRYAA p.Ser45Gly Uncertain significance Single submitter
All CRYAA variants
Pathogenic 6
- p.Arg116Cys Multiple submitters cataract 9 multiple types
- p.Arg116His Multiple submitters cataract 9 multiple types
- p.Arg116Ser Multiple submitters Inborn genetic diseases
- p.Arg21Gln Multiple submitters cataract 9 multiple types ⚠
- p.Arg54Cys Multiple submitters cataract 9 multiple types
- p.Gly98Arg Multiple submitters cataract 9 multiple types
Pathogenic/Likely pathogenic 2
- p.Arg12Cys Multiple submitters cataract 9 multiple types
- p.Arg21Trp Multiple submitters cataract 9 multiple types
Likely pathogenic 3
- p.Arg116Leu Single submitter cataract 9 multiple types
- p.Trp9Ter Single submitter
- p.Tyr48Asp No assertion criteria Developmental cataract
Conflicting classifications of pathogenicity 4
- p.Arg49Cys Single submitter congenital portosystemic shunt ⚠
- p.Arg54Pro Single submitter cataract 9 multiple types ⚠
- p.Gln147fs Single submitter cataract 9 multiple types
- p.Leu52Phe Single submitter cataract 9 multiple types ⚠
Benign 15
- c.189+171C>T Multiple submitters
- c.313-41G>A Multiple submitters
- c.*485G>A Multiple submitters cataract 9 multiple types
- c.*507C>G Multiple submitters cataract 9 multiple types
- c.*93T>G Multiple submitters cataract 9 multiple types
- p.Asp2= Multiple submitters cataract 9 multiple types
- p.Gly108= Multiple submitters cataract 9 multiple types
- p.Pro82= Multiple submitters cataract 9 multiple types
- p.Thr148= Multiple submitters cataract 9 multiple types
- c.190-261C>T Single submitter
- c.312+172G>A Single submitter
- c.313-283G>C Single submitter
- c.-81G>A Single submitter
- p.Phe71= Single submitter cataract 9 multiple types
- p.Tyr18= Single submitter cataract 9 multiple types
Benign/Likely benign 1
- p.Tyr109= Multiple submitters cataract 9 multiple types
Likely benign 29
- c.189+124C>T Multiple submitters
- c.189+71G>C Multiple submitters
- c.*102T>C Multiple submitters cataract 9 multiple types
- c.*103C>T Multiple submitters cataract 9 multiple types
- p.Asn101= Multiple submitters cataract 9 multiple types
- p.Ser66= Multiple submitters cataract 9 multiple types
- c.189+14C>T Single submitter cataract 9 multiple types
- c.189+15G>A Single submitter cataract 9 multiple types
- c.189+33C>T Single submitter
- c.189+533C>T Single submitter
- c.190-150G>A Single submitter
- c.312+17A>G Single submitter cataract 9 multiple types
- c.313-18C>T Single submitter cataract 9 multiple types
- c.313-285G>T Single submitter
- c.-62G>A Single submitter
- p.Glu83= Single submitter cataract 9 multiple types
- p.Gly149= Single submitter cataract 9 multiple types
- p.His107= Single submitter
- p.His97= Single submitter cataract 9 multiple types
- p.Leu37= Single submitter cataract 9 multiple types
- p.Leu40= Single submitter cataract 9 multiple types
- p.Leu75= Single submitter cataract 9 multiple types
- p.Phe27= Single submitter
- p.Phe53= Single submitter cataract 9 multiple types
- p.Ser130= Single submitter cataract 9 multiple types
- p.Ser162= Single submitter cataract 9 multiple types
- p.Thr86= Single submitter cataract 9 multiple types
- p.Asp105= No assertion criteria CRYAA-related disorder
- p.Glu95= No assertion criteria CRYAA-related disorder
Uncertain significance 52
- p.Ala155Asp Multiple submitters cataract 9 multiple types ⚠
- p.Arg112His Multiple submitters cataract 9 multiple types ⚠
- p.Arg119Cys Multiple submitters cataract 9 multiple types ⚠
- p.Arg68Trp Multiple submitters cataract 9 multiple types ⚠
- p.Gln90Pro Multiple submitters cataract 9 multiple types ⚠
- p.Phe17Ser Multiple submitters cataract 9 multiple types ⚠
- p.Ser172Pro Multiple submitters cataract 9 multiple types ⚠
- p.Val56Met Multiple submitters cataract 9 multiple types ⚠
- c.190-24_190-10del Single submitter cataract 9 multiple types
- c.-30C>G Single submitter cataract 9 multiple types
- c.*156T>G Single submitter cataract 9 multiple types
- c.*193G>A Single submitter cataract 9 multiple types
- c.*253C>T Single submitter cataract 9 multiple types
- c.*333G>A Single submitter cataract 9 multiple types
- c.*376G>C Single submitter cataract 9 multiple types
- c.*380G>A Single submitter cataract 9 multiple types
- c.*398G>A Single submitter cataract 9 multiple types
- p.Ala155Thr Single submitter ⚠
- p.Ala170Thr Single submitter cataract 9 multiple types ⚠
- p.Arg112Cys Single submitter ⚠
- p.Arg117Cys Single submitter cataract 9 multiple types ⚠
- p.Arg12His Single submitter cataract 9 multiple types ⚠
- p.Arg163Gln Single submitter cataract 9 multiple types ⚠
- p.Arg49His Single submitter ⚠
- p.Asp106Glu Single submitter cataract 9 multiple types ⚠
- p.Asp125Glu Single submitter cataract 9 multiple types ⚠
- p.Asp24Asn Single submitter ⚠
- p.Asp67Glu Single submitter ⚠
- p.Asp67His Single submitter cataract 9 multiple types ⚠
- p.Gln25His Single submitter cataract 9 multiple types ⚠
- p.Gln6Arg Single submitter cataract 9 multiple types ⚠
- p.Glu156Lys Single submitter cataract 9 multiple types ⚠
- p.Glu165Gly Single submitter ⚠
- p.Gly108_Tyr109dup Single submitter cataract 9 multiple types
- p.Gly108Ser Single submitter ⚠
- p.Gly137Ser Single submitter ⚠
- p.Ile110Leu Single submitter ⚠
- p.Ile146Thr Single submitter ⚠
- p.Ile73Val Single submitter ⚠
- p.Leu133Pro Single submitter cataract 9 multiple types ⚠
- p.Leu40Pro Single submitter ⚠
- p.Phe53Leu Single submitter ⚠
- p.Phe80Ser Single submitter cataract 9 multiple types ⚠
- p.Pro82Arg Single submitter ⚠
- p.Pro82Leu Single submitter cataract 9 multiple types ⚠
- p.Ser111Thr Single submitter ⚠
- p.Ser127Leu Single submitter ⚠
- p.Ser169Leu Single submitter cataract 9 multiple types ⚠
- p.Ser45Gly Single submitter ⚠
- p.Ser66Ala Single submitter ⚠
- p.Tyr109Ser Single submitter ⚠
- p.Val161Met Single submitter cataract 9 multiple types ⚠