CRYGD — 87 ClinVar variants
All ClinVar germline CRYGD variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 39 flagged for review →
6 Pathogenic · 3 Pathogenic/Likely pathogenic · 6 Likely pathogenic · 4 Conflicting · 20 Benign · 3 Benign/Likely benign · 8 Likely benign · 37 Uncertain significance
Full CRYGD gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 39
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 5
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
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CRYGD p.Arg15Cys
Pathogenic
Multiple submitters
CRYGD-related disorders
-
CRYGD p.Pro24Thr
Pathogenic/Likely pathogenic
Multiple submitters
CRYGD-related disorders
-
CRYGD p.Arg59His
Pathogenic
Single submitter
Aculeiform cataract
-
CRYGD p.Ser52Pro
Likely pathogenic
Single submitter
Aculeiform cataract
-
CRYGD p.Pro24Ser
Pathogenic
No assertion criteria
cataract 4 multiple types
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
CRYGD p.Gly61Cys
Conflicting
Single submitter
Aculeiform cataract
-
CRYGD p.Thr160Met
Conflicting
Single submitter
Aculeiform cataract
Predictors lean, ClinVar uncertain 22
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
CRYGD p.Arg115His
Uncertain significance
Multiple submitters
Aculeiform cataract
-
CRYGD p.Asn119Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
CRYGD p.Ser52Trp
Uncertain significance
Multiple submitters
Aculeiform cataract
-
CRYGD p.Arg117Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Arg153His
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Asn50Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Asp97Val
Uncertain significance
Single submitter
cataract 4 multiple types
-
CRYGD p.Cys33Arg
Uncertain significance
Single submitter
Aculeiform cataract
-
CRYGD p.Cys79Tyr
Uncertain significance
Single submitter
CRYGD-related disorder
- CRYGD p.Gly129Asp Uncertain significance Single submitter
-
CRYGD p.Gly2Arg
Uncertain significance
Single submitter
Aculeiform cataract
-
CRYGD p.His23Asp
Uncertain significance
Single submitter
Aculeiform cataract
-
CRYGD p.His84Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.His84Gln
Uncertain significance
Single submitter
Aculeiform cataract
-
CRYGD p.His88Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Leu58Arg
Uncertain significance
Single submitter
cataract 4 multiple types
-
CRYGD p.Pro28Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Ser137Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Ser166Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Tyr46Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Tyr63His
Uncertain significance
Single submitter
Inborn genetic diseases
-
CRYGD p.Ser78Phe
Uncertain significance
No assertion criteria
cataract 4 multiple types
Predictors split 10
The independent predictors disagree with each other — read with care.
-
CRYGD p.Arg140Gln
Uncertain significance
Multiple submitters
Aculeiform cataract
-
CRYGD p.Asn161Ser
Uncertain significance
Multiple submitters
CRYGD-related disorder
- CRYGD p.Arg153Cys Uncertain significance Single submitter
-
CRYGD p.Arg15His
Benign
Single submitter
Aculeiform cataract
- CRYGD p.Asp62Tyr Uncertain significance Single submitter
- CRYGD p.Asp65Asn Uncertain significance Single submitter
-
CRYGD p.His88Gln
Conflicting
Single submitter
Aculeiform cataract
-
CRYGD p.Ser40Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- CRYGD p.Ser40Cys Uncertain significance Single submitter
-
CRYGD p.Tyr29Cys
Uncertain significance
Single submitter
Aculeiform cataract
All CRYGD variants
Pathogenic 6
- p.Arg140Ter Multiple submitters Aculeiform cataract
- p.Arg15Cys Multiple submitters CRYGD-related disorders ⚠
- p.Arg37Ser Single submitter Aculeiform cataract
- p.Arg59His Single submitter Aculeiform cataract ⚠
- p.Glu104fs Single submitter CRYGD-related disorders
- p.Pro24Ser No assertion criteria cataract 4 multiple types ⚠
Pathogenic/Likely pathogenic 3
- p.Ala159fs Multiple submitters Aculeiform cataract
- p.Pro24Thr Multiple submitters CRYGD-related disorders ⚠
- p.Trp157Ter Multiple submitters Aculeiform cataract
Likely pathogenic 6
- p.Arg37Pro Multiple submitters CRYGD-related disorders
- p.Leu45Pro Single submitter
- p.Leu54del Single submitter Aculeiform cataract
- p.Ser52Pro Single submitter Aculeiform cataract ⚠
- p.Tyr17Ter Single submitter
- p.Tyr51Ter Single submitter
Conflicting classifications of pathogenicity 4
- p.Gly61Cys Single submitter Aculeiform cataract ⚠
- p.His88Gln Single submitter Aculeiform cataract ⚠
- p.Thr160Met Single submitter Aculeiform cataract ⚠
- p.Tyr56Ter Single submitter Aculeiform cataract
Benign 20
- c.10-7C>G Multiple submitters cataract 4 multiple types
- c.252+7A>G Multiple submitters cataract 4 multiple types
- c.9+20C>G Multiple submitters Aculeiform cataract
- c.9+20C>T Multiple submitters Aculeiform cataract
- c.-40C>T Multiple submitters cataract 4 multiple types
- c.*12T>C Multiple submitters cataract 4 multiple types
- p.Arg95= Multiple submitters cataract 4 multiple types
- p.Leu167= Multiple submitters Aculeiform cataract
- p.Tyr17= Multiple submitters cataract 4 multiple types
- p.Val126Met Multiple submitters Aculeiform cataract
- c.252+317G>A Single submitter
- c.253-169G>T Single submitter
- c.253-170T>C Single submitter
- c.253-266T>C Single submitter
- c.253-5G>A Single submitter Aculeiform cataract
- c.9+17C>T Single submitter Aculeiform cataract
- c.-39C>T Single submitter cataract 4 multiple types
- c.-44_-23del Single submitter
- p.Ala64= Single submitter cataract 4 multiple types
- p.Arg15His Single submitter Aculeiform cataract ⚠
Benign/Likely benign 3
- c.252+10T>A Multiple submitters cataract 4 multiple types
- p.Ser21= Multiple submitters cataract 4 multiple types
- p.Tyr63= Multiple submitters cataract 4 multiple types
Likely benign 8
- p.Arg80= Multiple submitters Aculeiform cataract
- c.10-16C>T Single submitter
- p.Leu112Val Single submitter Aculeiform cataract
- p.Ser40= Single submitter
- p.Thr160= Single submitter
- p.Tyr134Cys Single submitter Aculeiform cataract
- p.Tyr7His No assertion criteria CRYGD-related disorder
- p.Tyr93= No assertion criteria CRYGD-related disorder
Uncertain significance 37
- p.Arg115His Multiple submitters Aculeiform cataract ⚠
- p.Arg140Gln Multiple submitters Aculeiform cataract ⚠
- p.Asn119Ser Multiple submitters Inborn genetic diseases ⚠
- p.Asn161Ser Multiple submitters CRYGD-related disorder ⚠
- p.Ser52Trp Multiple submitters Aculeiform cataract ⚠
- c.9+2T>G Single submitter
- p.Arg117Cys Single submitter Inborn genetic diseases ⚠
- p.Arg153Cys Single submitter ⚠
- p.Arg153His Single submitter Inborn genetic diseases ⚠
- p.Asn138Lys Single submitter Inborn genetic diseases
- p.Asn50Lys Single submitter Inborn genetic diseases ⚠
- p.Asp150fs Single submitter Aculeiform cataract
- p.Asp62Tyr Single submitter ⚠
- p.Asp65Asn Single submitter ⚠
- p.Asp97Val Single submitter cataract 4 multiple types ⚠
- p.Cys33Arg Single submitter Aculeiform cataract ⚠
- p.Cys79Tyr Single submitter CRYGD-related disorder ⚠
- p.Glu8fs Single submitter Aculeiform cataract
- p.Gly129Asp Single submitter ⚠
- p.Gly2Arg Single submitter Aculeiform cataract ⚠
- p.His23Asp Single submitter Aculeiform cataract ⚠
- p.His84Asp Single submitter Inborn genetic diseases ⚠
- p.His84Gln Single submitter Aculeiform cataract ⚠
- p.His88Tyr Single submitter Inborn genetic diseases ⚠
- p.Leu58Arg Single submitter cataract 4 multiple types ⚠
- p.Met102fs Single submitter cataract 4 multiple types
- p.Pro28Ser Single submitter Inborn genetic diseases ⚠
- p.Ser137Cys Single submitter Inborn genetic diseases ⚠
- p.Ser166Ala Single submitter Inborn genetic diseases ⚠
- p.Ser40Arg Single submitter Inborn genetic diseases ⚠
- p.Ser40Cys Single submitter ⚠
- p.Ser75Pro Single submitter CRYGD-related disorder
- p.Tyr134fs Single submitter Aculeiform cataract
- p.Tyr29Cys Single submitter Aculeiform cataract ⚠
- p.Tyr46Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr63His Single submitter Inborn genetic diseases ⚠
- p.Ser78Phe No assertion criteria cataract 4 multiple types ⚠