CUL3 — 681 ClinVar variants

All ClinVar germline CUL3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 196 flagged for review →

66 Pathogenic · 9 Pathogenic/Likely pathogenic · 51 Likely pathogenic · 23 Conflicting · 74 Benign · 13 Benign/Likely benign · 139 Likely benign · 306 Uncertain significance

Full CUL3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 196

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 5

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 134

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 49

The independent predictors disagree with each other — read with care.

All CUL3 variants

Pathogenic 66

  • c.883+1G>T Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • p.Arg148Ter Multiple submitters Inborn genetic diseases
  • p.Arg247Ter Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • p.Arg438Gly Multiple submitters CUL3-related disorder
  • p.Asn453fs Multiple submitters Inborn genetic diseases
  • p.Gln641Ter Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • p.Ile145fs Multiple submitters Inborn genetic diseases
  • c.1207-26A>G Single submitter pseudohypoaldosteronism type 2A
  • c.1610+2T>C Single submitter neurodevelopmental disorder with or without autism or seizures
  • c.2029+1G>A Single submitter
  • c.264+2T>G Single submitter neurodevelopmental disorder with or without autism or seizures
  • c.883+2T>C Single submitter
  • p.Ala214Gly Single submitter pseudohypoaldosteronism type 2E ⚠
  • p.Ala226fs Single submitter
  • p.Ala40fs Single submitter
  • p.Arg158fs Single submitter
  • p.Arg709_Ile710insTer Single submitter
  • p.Arg90Ter Single submitter
  • p.Asn453_Met454insTer Single submitter
  • p.Asp426fs Single submitter Inborn genetic diseases
  • p.Gln218Ter Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Gln632fs Single submitter
  • p.Gln632Ter Single submitter
  • p.Glu137Ter Single submitter Inborn genetic diseases
  • p.Glu172fs Single submitter
  • p.Glu203Ter Single submitter
  • p.Glu244Ter Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Glu265Ter Single submitter Inborn genetic diseases
  • p.Glu79fs Single submitter Inborn genetic diseases
  • p.Glu83Ter Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Gly197fs Single submitter CUL3-related disorder
  • p.Gly656fs Single submitter
  • p.Ile622fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Leu193Ter Single submitter complex neurodevelopmental disorder
  • p.Leu346fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Leu412fs Single submitter
  • p.Leu550fs Single submitter
  • p.Leu85Pro Single submitter
  • p.Lys459Met Single submitter pseudohypoaldosteronism type 2E
  • p.Met317fs Single submitter
  • p.Met473fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Met554fs Single submitter Inborn genetic diseases
  • p.Ser221fs Single submitter CUL3-related disorder
  • p.Ser255Ter Single submitter
  • p.Ser450fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Ser480Ter Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Thr369fs Single submitter
  • p.Thr515fs Single submitter Inborn genetic diseases
  • p.Val507fs Single submitter Inborn genetic diseases
  • c.1207-12T>G No assertion criteria pseudohypoaldosteronism type 2E
  • c.1207-1G>A No assertion criteria pseudohypoaldosteronism type 2E
  • c.1207-28T>G No assertion criteria pseudohypoaldosteronism type 2E
  • c.1207-3C>T No assertion criteria pseudohypoaldosteronism type 2E
  • c.1207-5T>A No assertion criteria pseudohypoaldosteronism type 2E
  • c.1376_1377+4del No assertion criteria pseudohypoaldosteronism type 2A
  • c.1377+1dup No assertion criteria pseudohypoaldosteronism type 2A
  • c.1377+1G>C No assertion criteria pseudohypoaldosteronism type 2A
  • p.Arg46fs No assertion criteria Neurodevelopmental disorder without autism with seizures
  • p.Asp413fs No assertion criteria NEURODEVELOPMENTAL DISORDER WITHOUT AUTISM OR SEIZURES
  • p.Glu451Ter No assertion criteria CUL3-related disorder
  • p.Leu412= No assertion criteria pseudohypoaldosteronism type 2A
  • p.Lys459Arg No assertion criteria pseudohypoaldosteronism type 2A
  • p.Met189fs No assertion criteria neurodevelopmental disorder with or without autism or seizures
  • p.Ser199Ter No assertion criteria NEURODEVELOPMENTAL DISORDER WITH AUTISM WITHOUT SEIZURES
  • p.Thr587Ter No assertion criteria NEURODEVELOPMENTAL DISORDER WITH AUTISM AND SEIZURES
  • p.Val285Ala No assertion criteria Neurodevelopmental disorder without autism with seizures ⚠

Pathogenic/Likely pathogenic 9

  • c.1377+1G>A Multiple submitters CUL3-related disorder
  • c.540_541del Multiple submitters CUL3-related disorder
  • c.883+1G>A Multiple submitters
  • p.Arg128Cys Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • p.Asp449_Ser450insTer Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • p.Gln368fs Multiple submitters CUL3-related disorder
  • p.Leu165fs Multiple submitters Inborn genetic diseases
  • p.Ser517fs Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • p.Tyr58Cys Multiple submitters autosomal dominant pseudohypoaldosteronism type 1

Likely pathogenic 51

  • c.1377+4A>G Multiple submitters pseudohypoaldosteronism type 2E
  • p.Gly143Ter Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • p.Lys47Ter Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • c.1207-12T>A Single submitter CUL3-related disorder
  • c.1485+1G>C Single submitter neurodevelopmental disorder with or without autism or seizures
  • c.2175+1G>A Single submitter
  • c.2175+1G>C Single submitter
  • c.264+1G>C Single submitter
  • c.884-2del Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Ala437Val Single submitter pseudohypoaldosteronism type 2E
  • p.Arg128Leu Single submitter
  • p.Arg148Pro Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Arg180fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Arg247fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Arg351fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Asn290fs Single submitter
  • p.Asn48fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Asp413Gly Single submitter CUL3-related disorder
  • p.Cys187Tyr Single submitter CUL3-related disorder
  • p.Cys462fs Single submitter
  • p.Gln188Ter Single submitter neurodevelopmental disorder
  • p.Glu386fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Glu407= Single submitter
  • p.Gly584fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.His160fs Single submitter
  • p.His543fs Single submitter pseudohypoaldosteronism type 2E
  • p.His657fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Leu284fs Single submitter
  • p.Leu321Phe Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Leu491fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Leu627Pro Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Lys235_Lys236insTer Single submitter
  • p.Lys459= Single submitter pseudohypoaldosteronism type 2A
  • p.Met191fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Met287fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Phe474fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Pro736fs Single submitter
  • p.Ser304Ter Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Ser445fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Ser450Phe Single submitter CUL3-related disorder
  • p.Ser96Ter Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Thr460fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Tyr62Cys Single submitter
  • p.Val129fs Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Val505Asp Single submitter neurodevelopmental disorder with or without autism or seizures
  • p.Val628fs Single submitter pseudohypoaldosteronism type 2E
  • p.Val65fs Single submitter CUL3-related disorder
  • p.Asn134fs No assertion criteria CUL3-related disorder
  • p.Gly500Asp No assertion criteria NK-cell enteropathy ⚠
  • p.Ile276fs No assertion criteria Neurodevelopmental abnormality
  • p.Met249Ter No assertion criteria intellectual disability

Conflicting classifications of pathogenicity 23

  • c.1030-6T>C Single submitter Inborn genetic diseases
  • c.1206+1G>T Single submitter neurodevelopmental disorder with or without autism or seizures ⚠
  • c.264+1G>T Single submitter ⚠
  • c.540-5G>A Single submitter Inborn genetic diseases
  • c.-246C>T Single submitter pseudohypoaldosteronism type 2E
  • c.*2130A>G Single submitter pseudohypoaldosteronism type 2E
  • c.*2272T>C Single submitter pseudohypoaldosteronism type 2E
  • c.*294A>G Single submitter pseudohypoaldosteronism type 2E
  • p.Arg128His Single submitter neurodevelopmental disorder with or without autism or seizures ⚠
  • p.Arg46His Single submitter neurodevelopmental disorder with or without autism or seizures ⚠
  • p.Arg546Ter Single submitter Paediatric disorders ⚠
  • p.Arg756Gln Single submitter ⚠
  • p.Arg756Ter Single submitter ⚠
  • p.Gln188Arg Single submitter neurodevelopmental disorder with or without autism or seizures ⚠
  • p.Gln551Ter Single submitter Inborn genetic diseases ⚠
  • p.His701Leu Single submitter Inborn genetic diseases ⚠
  • p.Ile741Thr Single submitter Inborn genetic diseases ⚠
  • p.Ile749Thr Single submitter neurodevelopmental disorder with or without autism or seizures ⚠
  • p.Leu346= Single submitter pseudohypoaldosteronism type 2E
  • p.Ser389Leu Single submitter Inborn genetic diseases ⚠
  • p.Ser478Thr Single submitter Inborn genetic diseases ⚠
  • p.Tyr431= Single submitter pseudohypoaldosteronism type 2E
  • p.Val232= Single submitter

Benign 74

Benign/Likely benign 13

  • c.1843-9A>C Multiple submitters
  • c.2029+14T>C Multiple submitters pseudohypoaldosteronism type 2E
  • c.264+9C>T Multiple submitters pseudohypoaldosteronism type 2E
  • c.539+12_539+15del Multiple submitters
  • c.883+13G>C Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • c.-289G>A Multiple submitters pseudohypoaldosteronism type 2E
  • p.Ala527= Multiple submitters pseudohypoaldosteronism type 2E
  • p.Gly181= Multiple submitters neurodevelopmental disorder with or without autism or seizures
  • p.Gly7= Multiple submitters pseudohypoaldosteronism type 2E
  • p.Leu634= Multiple submitters pseudohypoaldosteronism type 2E
  • p.Ser684= Multiple submitters pseudohypoaldosteronism type 2E
  • p.Thr256= Multiple submitters
  • p.Thr467= Multiple submitters pseudohypoaldosteronism type 2E

Likely benign 139

Uncertain significance 306

Showing the top 300 by review status; the full set is in the sitemap.