DCX — 327 ClinVar variants

All ClinVar germline DCX variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 99 flagged for review →

110 Pathogenic · 10 Pathogenic/Likely pathogenic · 41 Likely pathogenic · 16 Conflicting · 11 Benign · 10 Benign/Likely benign · 32 Likely benign · 97 Uncertain significance

Full DCX gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 99

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 12

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 1

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 58

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 27

The independent predictors disagree with each other — read with care.

All DCX variants

Pathogenic 110

Pathogenic/Likely pathogenic 10

  • c.809-1G>A Multiple submitters lissencephaly type 1 due to doublecortin gene mutation
  • p.Arg178Cys Multiple submitters lissencephaly type 1 due to doublecortin gene mutation
  • p.Arg186Leu Multiple submitters lissencephaly type 1 due to doublecortin gene mutation
  • p.Arg192Trp Multiple submitters lissencephaly type 1 due to doublecortin gene mutation
  • p.Arg59His Multiple submitters Ectopic tissue
  • p.Arg76Cys Multiple submitters Ectopic tissue
  • p.Asp62Asn Multiple submitters lissencephaly type 1 due to doublecortin gene mutation
  • p.Pro179Arg Multiple submitters lissencephaly type 1 due to doublecortin gene mutation
  • p.Val182Phe Multiple submitters lissencephaly type 1 due to doublecortin gene mutation
  • p.Lys180Asn No assertion criteria

Likely pathogenic 41

Conflicting classifications of pathogenicity 16

Benign 11

Benign/Likely benign 10

Likely benign 32

Uncertain significance 97