DLK1 — 89 ClinVar variants
All ClinVar germline DLK1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 51 flagged for review →
1 Likely pathogenic · 12 Benign · 1 Benign/Likely benign · 19 Likely benign · 56 Uncertain significance
Full DLK1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 51
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 40
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
DLK1 p.Arg344Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
DLK1 p.Ala16Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ala249Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ala249Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ala91Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ala98Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Arg9Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Asn172Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Asp107Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Asp39Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Asp78Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Cys131Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Cys57Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- DLK1 p.Gln352His Uncertain significance Single submitter
-
DLK1 p.Gln73Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Glu232Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Glu274Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Glu281Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Glu291Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Glu381Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Glu38Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Glu83Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Gly302Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Gly82Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ile75Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Lys236Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Lys247Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Pro160Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Pro216Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Pro297Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ser355Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ser375Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ser94Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Thr102Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Thr143Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Thr21Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Thr256Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Tyr22Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Val277Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Gly35Arg
Uncertain significance
No assertion criteria
Silver-Russell syndrome 1
Predictors split 11
The independent predictors disagree with each other — read with care.
-
DLK1 p.Arg248Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- DLK1 p.Arg90Gln Benign Single submitter
-
DLK1 p.Arg90Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Cys330Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Gly183Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Gly189Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Gly62Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Pro176Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Pro28Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ser105Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
DLK1 p.Ser120Leu
Uncertain significance
Single submitter
Inborn genetic diseases
All DLK1 variants
Likely pathogenic 1
- p.Tyr119Ter No assertion criteria central precocious puberty
Benign 12
- p.Asp380His Multiple submitters
- p.Gln73Leu Multiple submitters
- p.Pro280= Multiple submitters
- p.Ser375= Multiple submitters
- p.Val104Met Multiple submitters
- p.Val145Leu Multiple submitters
- p.Arg90Gln Single submitter ⚠
- p.His65Arg Single submitter Silver-Russell syndrome 1
- p.Ile201= Single submitter
- p.Cys233= No assertion criteria DLK1-related disorder
- p.Ile188= No assertion criteria DLK1-related disorder
- p.Ser260Asn No assertion criteria DLK1-related disorder
Benign/Likely benign 1
- p.Gln33= Multiple submitters
Likely benign 19
- p.Ala213Thr Multiple submitters Inborn genetic diseases
- p.Thr321= Multiple submitters Inborn genetic diseases
- c.262+119C>T Single submitter
- c.263-5C>T Single submitter
- p.Arg248= Single submitter
- p.Asn134= Single submitter Inborn genetic diseases
- p.Cys179= Single submitter
- p.Gly311= Single submitter
- p.Gly69Glu Single submitter Inborn genetic diseases
- p.His65= Single submitter
- p.Ile169= Single submitter Inborn genetic diseases
- p.Leu292Phe Single submitter
- p.Leu67= Single submitter
- p.Pro71= Single submitter
- p.Ser260= Single submitter
- p.Val184Ile Single submitter Inborn genetic diseases
- p.Val58Met Single submitter Inborn genetic diseases
- c.262+4G>A No assertion criteria DLK1-related disorder
- p.Cys57= No assertion criteria DLK1-related disorder
Uncertain significance 56
- p.Arg344Gln Multiple submitters Inborn genetic diseases ⚠
- p.Ala16Val Single submitter Inborn genetic diseases ⚠
- p.Ala249Thr Single submitter Inborn genetic diseases ⚠
- p.Ala249Val Single submitter Inborn genetic diseases ⚠
- p.Ala91Val Single submitter Inborn genetic diseases ⚠
- p.Ala98Thr Single submitter Inborn genetic diseases ⚠
- p.Arg248Cys Single submitter Inborn genetic diseases ⚠
- p.Arg90Trp Single submitter Inborn genetic diseases ⚠
- p.Arg9Gly Single submitter Inborn genetic diseases ⚠
- p.Asn172Ser Single submitter Inborn genetic diseases ⚠
- p.Asp107Tyr Single submitter Inborn genetic diseases ⚠
- p.Asp39Glu Single submitter Inborn genetic diseases ⚠
- p.Asp78Asn Single submitter Inborn genetic diseases ⚠
- p.Cys131Tyr Single submitter Inborn genetic diseases ⚠
- p.Cys330Tyr Single submitter Inborn genetic diseases ⚠
- p.Cys57Gly Single submitter Inborn genetic diseases ⚠
- p.Gln352His Single submitter ⚠
- p.Gln73Lys Single submitter Inborn genetic diseases ⚠
- p.Glu232Lys Single submitter Inborn genetic diseases ⚠
- p.Glu274Gln Single submitter Inborn genetic diseases ⚠
- p.Glu281Asp Single submitter Inborn genetic diseases ⚠
- p.Glu291Ala Single submitter Inborn genetic diseases ⚠
- p.Glu381Lys Single submitter Inborn genetic diseases ⚠
- p.Glu38Ter Single submitter
- p.Glu38Val Single submitter Inborn genetic diseases ⚠
- p.Glu83Gly Single submitter Inborn genetic diseases ⚠
- p.Gly183Ser Single submitter Inborn genetic diseases ⚠
- p.Gly189Arg Single submitter Inborn genetic diseases ⚠
- p.Gly190Val Single submitter Inborn genetic diseases
- p.Gly302Ser Single submitter Inborn genetic diseases ⚠
- p.Gly62Ser Single submitter Inborn genetic diseases ⚠
- p.Gly82Arg Single submitter Inborn genetic diseases ⚠
- p.Ile75Met Single submitter Inborn genetic diseases ⚠
- p.Lys236Glu Single submitter Inborn genetic diseases ⚠
- p.Lys247Arg Single submitter Inborn genetic diseases ⚠
- p.Lys345Asn Single submitter Inborn genetic diseases
- p.Met289Ile Single submitter Inborn genetic diseases
- p.Pro160Ala Single submitter Inborn genetic diseases ⚠
- p.Pro176His Single submitter Inborn genetic diseases
- p.Pro176Ser Single submitter Inborn genetic diseases ⚠
- p.Pro216Leu Single submitter Inborn genetic diseases ⚠
- p.Pro28Leu Single submitter Inborn genetic diseases ⚠
- p.Pro297Thr Single submitter Inborn genetic diseases ⚠
- p.Ser105Arg Single submitter Inborn genetic diseases ⚠
- p.Ser120Leu Single submitter Inborn genetic diseases ⚠
- p.Ser355Gly Single submitter Inborn genetic diseases ⚠
- p.Ser375Arg Single submitter Inborn genetic diseases ⚠
- p.Ser94Leu Single submitter Inborn genetic diseases ⚠
- p.Thr102Ile Single submitter Inborn genetic diseases ⚠
- p.Thr143Ala Single submitter Inborn genetic diseases ⚠
- p.Thr21Ile Single submitter Inborn genetic diseases ⚠
- p.Thr256Ile Single submitter Inborn genetic diseases ⚠
- p.Tyr22Cys Single submitter Inborn genetic diseases ⚠
- p.Val277Leu Single submitter Inborn genetic diseases ⚠
- c.67+78C>T No assertion criteria central precocious puberty
- p.Gly35Arg No assertion criteria Silver-Russell syndrome 1 ⚠