DMP1 — 303 ClinVar variants

All ClinVar germline DMP1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 158 flagged for review →

12 Pathogenic · 2 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 14 Conflicting · 25 Benign · 4 Benign/Likely benign · 68 Likely benign · 174 Uncertain significance

Full DMP1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 158

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 87

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 68

The independent predictors disagree with each other — read with care.

All DMP1 variants

Pathogenic 12

Pathogenic/Likely pathogenic 2

  • c.55-1G>C Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Gly135Ter Multiple submitters hypophosphatemic rickets, autosomal recessive, 1

Likely pathogenic 4

Conflicting classifications of pathogenicity 14

  • c.135+1G>T Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • p.Arg272His Single submitter hypophosphatemic rickets, autosomal recessive, 1 ⚠
  • p.Asp104= Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • p.Asp142Tyr Single submitter hypophosphatemic rickets, autosomal recessive, 1 ⚠
  • p.Asp369= Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • p.Asp452= Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • p.Glu31Lys Single submitter hypophosphatemic rickets, autosomal recessive, 1 ⚠
  • p.Gly315Arg Single submitter hypophosphatemic rickets, autosomal recessive, 1 ⚠
  • p.Gly53= Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • p.Leu134= Single submitter
  • p.Ser293= Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • p.Ser341= Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • p.Thr42Pro Single submitter hypophosphatemic rickets, autosomal recessive, 1 ⚠
  • p.Val174= Single submitter hypophosphatemic rickets, autosomal recessive, 1

Benign 25

  • c.102+256T>C Multiple submitters
  • c.102+79A>G Multiple submitters
  • c.54+56A>G Multiple submitters
  • c.-21-51A>G Multiple submitters
  • c.*280C>T Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • c.*329A>C Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • c.*35G>A Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • c.*457T>C Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • c.*607A>G Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Asn483Thr Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Gln159Lys Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Glu410= Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Ser406= Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Ser69Cys Multiple submitters hypophosphatemic rickets, autosomal recessive, 1 ⚠
  • c.183+180T>C Single submitter
  • c.184-299dup Single submitter
  • c.184-300_184-299dup Single submitter
  • c.184-301_184-299dup Single submitter
  • c.55-13del Single submitter
  • c.-21-205T>C Single submitter
  • c.*380C>T Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • c.*603C>T Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • c.*905A>G Single submitter hypophosphatemic rickets, autosomal recessive, 1
  • p.Gly99del Single submitter
  • p.Ser384Asn Single submitter ⚠

Benign/Likely benign 4

  • p.Glu213= Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Gly200= Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Leu282Ile Multiple submitters hypophosphatemic rickets, autosomal recessive, 1
  • p.Lys463Arg Multiple submitters hypophosphatemic rickets, autosomal recessive, 1

Likely benign 68

Uncertain significance 174