DNM1L — 817 ClinVar variants

All ClinVar germline DNM1L variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 280 flagged for review →

25 Pathogenic · 7 Pathogenic/Likely pathogenic · 32 Likely pathogenic · 21 Conflicting · 63 Benign · 11 Benign/Likely benign · 348 Likely benign · 310 Uncertain significance

Full DNM1L gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 280

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 4

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 189

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 189

Predictors split 80

The independent predictors disagree with each other — read with care.

All DNM1L variants

Pathogenic 25

  • p.Arg403Cys Multiple submitters Inborn genetic diseases
  • p.Cys431Tyr Multiple submitters optic atrophy 5
  • p.Gly362Ser Multiple submitters encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Ala638fs Single submitter
  • p.Arg108Ter Single submitter
  • p.Arg167Ter Single submitter
  • p.Arg456fs Single submitter
  • p.Arg649Ter Single submitter
  • p.Asn90Lys Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Cys345fs Single submitter
  • p.Glu410fs Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Glu566Ter Single submitter
  • p.Ile166fs Single submitter
  • p.Lys256fs Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Lys608fs Single submitter
  • p.Lys660fs Single submitter
  • p.Lys75Glu Single submitter encephalopathy due to mitochondrial and peroxisomal fission defect ⚠
  • p.Phe370Ser Single submitter
  • p.Phe501fs Single submitter
  • p.Ser39Gly Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Ser534fs Single submitter
  • p.Ala192Glu No assertion criteria optic atrophy 5
  • p.Ala395Asp No assertion criteria encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Glu2Ala No assertion criteria optic atrophy 5
  • p.Trp88fs No assertion criteria encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1

Pathogenic/Likely pathogenic 7

  • c.1674+1G>A Multiple submitters encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Arg530Ter Multiple submitters
  • p.Asp146Asn Multiple submitters DNM1L-related mitochondrial disorders
  • p.Glu116fs Multiple submitters encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Ser39Asn Multiple submitters encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Thr59Asn Multiple submitters encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Tyr691Cys Multiple submitters encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1

Likely pathogenic 32

  • c.1596+2T>A Multiple submitters optic atrophy 5
  • p.Gly401Ser Multiple submitters DNM1L-related disorder
  • p.Leu700del Multiple submitters DNM1L-related movement disorder
  • c.1674+2T>A Single submitter
  • c.297+1G>A Single submitter
  • c.298-1G>C Single submitter
  • c.457-2A>G Single submitter
  • c.873-9_873-1del Single submitter
  • p.Ala364Asp Single submitter
  • p.Arg710Gly Single submitter mitochondrial disease
  • p.Cys367Arg Single submitter
  • p.Gln721Ter Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Glu379Lys Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Glu410Lys Single submitter Inborn genetic diseases
  • p.Gly149Arg Single submitter
  • p.Gly149Val Single submitter
  • p.Gly350Ala Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Gly362Asp Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Gly363Asp Single submitter mitochondrial disease
  • p.Gly363Ser Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Leu416Pro Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Leu650Arg Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Phe370Leu Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Pro85fs Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Ser39Arg Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Thr115_Glu116del Single submitter
  • p.Thr143Arg Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Thr496Arg Single submitter
  • p.Thr59Ile Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Tyr344His Single submitter
  • p.Val245delinsGluTer Single submitter encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1
  • p.Cys446Phe No assertion criteria encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1

Conflicting classifications of pathogenicity 21

Benign 63

Benign/Likely benign 11

Likely benign 348

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 310

Showing the top 300 by review status; the full set is in the sitemap.