DPP9 — 172 ClinVar variants
All ClinVar germline DPP9 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 131 flagged for review →
2 Pathogenic · 2 Likely pathogenic · 3 Conflicting · 4 Benign · 2 Benign/Likely benign · 20 Likely benign · 139 Uncertain significance
Full DPP9 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 131
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
- DPP9 p.Arg249Gln Conflicting Single submitter
-
DPP9 p.Gly167Ser
Conflicting
No assertion criteria
hatipoglu immunodeficiency syndrome
Predictors lean, ClinVar uncertain 67
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- DPP9 p.Lys509Arg Uncertain significance Multiple submitters
- DPP9 p.Ala323Val Uncertain significance Single submitter
- DPP9 p.Ala45Thr Uncertain significance Single submitter
- DPP9 p.Ala659Thr Uncertain significance Single submitter
- DPP9 p.Arg100His Uncertain significance Single submitter
- DPP9 p.Arg250Trp Uncertain significance Single submitter
- DPP9 p.Arg281His Uncertain significance Single submitter
- DPP9 p.Arg333Trp Uncertain significance Single submitter
- DPP9 p.Arg388Gln Uncertain significance Single submitter
- DPP9 p.Arg619Ser Uncertain significance Single submitter
- DPP9 p.Arg717Gln Uncertain significance Single submitter
- DPP9 p.Arg71Cys Uncertain significance Single submitter
- DPP9 p.Asn186Asp Uncertain significance Single submitter
- DPP9 p.Asn866Asp Uncertain significance Single submitter
- DPP9 p.Asp139His Uncertain significance Single submitter
- DPP9 p.Asp39Asn Uncertain significance Single submitter
- DPP9 p.Asp610Glu Uncertain significance Single submitter
- DPP9 p.Asp612Asn Uncertain significance Single submitter
- DPP9 p.Asp707Asn Uncertain significance Single submitter
- DPP9 p.Asp749Asn Uncertain significance Single submitter
-
DPP9 p.Asp84Asn
Uncertain significance
Single submitter
hatipoglu immunodeficiency syndrome
- DPP9 p.Gln369Arg Uncertain significance Single submitter
- DPP9 p.Gln86Arg Uncertain significance Single submitter
- DPP9 p.Gln89Arg Uncertain significance Single submitter
- DPP9 p.Glu422Lys Uncertain significance Single submitter
- DPP9 p.Gly194Ser Uncertain significance Single submitter
- DPP9 p.Gly195Ser Uncertain significance Single submitter
- DPP9 p.Gly215Ala Uncertain significance Single submitter
- DPP9 p.Gly34Arg Uncertain significance Single submitter
- DPP9 p.Gly504Ala Uncertain significance Single submitter
- DPP9 p.Gly521Asp Uncertain significance Single submitter
- DPP9 p.Gly565Ser Uncertain significance Single submitter
- DPP9 p.Gly62Glu Uncertain significance Single submitter
- DPP9 p.Gly675Ser Uncertain significance Single submitter
- DPP9 p.Gly708Ser Uncertain significance Single submitter
- DPP9 p.Gly761Arg Uncertain significance Single submitter
- DPP9 p.His190Gln Uncertain significance Single submitter
- DPP9 p.His453Leu Uncertain significance Single submitter
- DPP9 p.His58Arg Uncertain significance Single submitter
- DPP9 p.His99Tyr Uncertain significance Single submitter
- DPP9 p.Ile66Val Uncertain significance Single submitter
- DPP9 p.Lys477Asn Uncertain significance Single submitter
- DPP9 p.Lys57Asn Uncertain significance Single submitter
- DPP9 p.Met581Val Uncertain significance Single submitter
- DPP9 p.Phe253Tyr Uncertain significance Single submitter
- DPP9 p.Pro265Arg Uncertain significance Single submitter
- DPP9 p.Pro784Leu Uncertain significance Single submitter
- DPP9 p.Pro96Ser Uncertain significance Single submitter
- DPP9 p.Ser133Pro Uncertain significance Single submitter
- DPP9 p.Ser151Phe Uncertain significance Single submitter
- DPP9 p.Ser175Arg Uncertain significance Single submitter
- DPP9 p.Ser65Gly Uncertain significance Single submitter
- DPP9 p.Ser74Leu Uncertain significance Single submitter
- DPP9 p.Ser870Cys Uncertain significance Single submitter
- DPP9 p.Thr252Ile Uncertain significance Single submitter
- DPP9 p.Thr46Arg Uncertain significance Single submitter
- DPP9 p.Thr572Met Uncertain significance Single submitter
- DPP9 p.Tyr108His Uncertain significance Single submitter
- DPP9 p.Val274Ile Uncertain significance Single submitter
-
DPP9 p.Val489Ile
Uncertain significance
Single submitter
hatipoglu immunodeficiency syndrome
- DPP9 p.Val542Gly Uncertain significance Single submitter
- DPP9 p.Val568Ile Uncertain significance Single submitter
- DPP9 p.Val603Ile Uncertain significance Single submitter
- DPP9 p.Val787Ile Uncertain significance Single submitter
- DPP9 p.Val802Ile Uncertain significance Single submitter
- DPP9 p.Val819Met Uncertain significance Single submitter
- DPP9 p.Val840Met Uncertain significance Single submitter
Predictors split 62
The independent predictors disagree with each other — read with care.
-
DPP9 p.Asp310Asn
Uncertain significance
Multiple submitters
hatipoglu immunodeficiency syndrome
- DPP9 p.Glu566Lys Benign/Likely benign Multiple submitters
-
DPP9 p.Thr301Met
Uncertain significance
Multiple submitters
hatipoglu immunodeficiency syndrome
- DPP9 p.Thr329Met Benign Multiple submitters
- DPP9 p.Ala384Ser Uncertain significance Single submitter
- DPP9 p.Ala393Ser Uncertain significance Single submitter
- DPP9 p.Ala473Thr Uncertain significance Single submitter
- DPP9 p.Ala81Val Uncertain significance Single submitter
- DPP9 p.Arg192Cys Uncertain significance Single submitter
- DPP9 p.Arg192Leu Uncertain significance Single submitter
- DPP9 p.Arg249Trp Uncertain significance Single submitter
- DPP9 p.Arg425Trp Uncertain significance Single submitter
- DPP9 p.Arg528Met Uncertain significance Single submitter
- DPP9 p.Arg569His Uncertain significance Single submitter
- DPP9 p.Arg645Cys Uncertain significance Single submitter
-
DPP9 p.Arg645His
Uncertain significance
Single submitter
hatipoglu immunodeficiency syndrome
- DPP9 p.Arg649Trp Uncertain significance Single submitter
- DPP9 p.Arg64Trp Uncertain significance Single submitter
- DPP9 p.Asn234Asp Uncertain significance Single submitter
- DPP9 p.Asp172Asn Uncertain significance Single submitter
- DPP9 p.Asp280Asn Uncertain significance Single submitter
-
DPP9 p.Asp48His
Uncertain significance
Single submitter
hatipoglu immunodeficiency syndrome
- DPP9 p.Asp496Asn Uncertain significance Single submitter
- DPP9 p.Gln661Leu Uncertain significance Single submitter
- DPP9 p.Glu176Lys Uncertain significance Single submitter
- DPP9 p.Glu244Lys Uncertain significance Single submitter
- DPP9 p.Glu308Gln Uncertain significance Single submitter
- DPP9 p.Glu308Lys Uncertain significance Single submitter
- DPP9 p.Glu313Lys Uncertain significance Single submitter
- DPP9 p.Glu420Gln Likely benign Single submitter
- DPP9 p.Glu443Lys Uncertain significance Single submitter
- DPP9 p.Glu732Lys Uncertain significance Single submitter
- DPP9 p.Glu736Ala Uncertain significance Single submitter
- DPP9 p.Gly195Cys Uncertain significance Single submitter
- DPP9 p.Gly521Ser Uncertain significance Single submitter
- DPP9 p.Gly809Ser Uncertain significance Single submitter
- DPP9 p.His602Tyr Uncertain significance Single submitter
- DPP9 p.Ile512Phe Uncertain significance Single submitter
- DPP9 p.Leu262Pro Uncertain significance Single submitter
- DPP9 p.Leu832Phe Uncertain significance Single submitter
- DPP9 p.Lys664Glu Uncertain significance Single submitter
- DPP9 p.Met396Val Uncertain significance Single submitter
- DPP9 p.Phe740Leu Uncertain significance Single submitter
- DPP9 p.Pro412Arg Uncertain significance Single submitter
- DPP9 p.Pro417Leu Uncertain significance Single submitter
- DPP9 p.Pro631Leu Uncertain significance Single submitter
- DPP9 p.Ser578Cys Uncertain significance Single submitter
- DPP9 p.Ser59Leu Uncertain significance Single submitter
- DPP9 p.Ser607Asn Uncertain significance Single submitter
- DPP9 p.Ser94Tyr Uncertain significance Single submitter
- DPP9 p.Thr144Met Uncertain significance Single submitter
- DPP9 p.Thr33Ile Uncertain significance Single submitter
- DPP9 p.Thr37Met Uncertain significance Single submitter
- DPP9 p.Thr419Ile Uncertain significance Single submitter
- DPP9 p.Thr487Ala Uncertain significance Single submitter
- DPP9 p.Thr597Ala Uncertain significance Single submitter
- DPP9 p.Thr91Met Uncertain significance Single submitter
- DPP9 p.Val408Ile Uncertain significance Single submitter
- DPP9 p.Val595Met Uncertain significance Single submitter
- DPP9 p.Val601Met Uncertain significance Single submitter
- DPP9 p.Val849Leu Uncertain significance Single submitter
- DPP9 p.Val88Gly Uncertain significance Single submitter
All DPP9 variants
Pathogenic 2
- p.Arg111Ter No assertion criteria hatipoglu immunodeficiency syndrome
- p.Gln851Ter No assertion criteria hatipoglu immunodeficiency syndrome
Likely pathogenic 2
- p.Arg828Cys Single submitter hatipoglu immunodeficiency syndrome
- p.Met726Ile Single submitter Susceptibility to severe COVID-19
Conflicting classifications of pathogenicity 3
- p.Arg249Gln Single submitter ⚠
- p.Gly167Ser No assertion criteria hatipoglu immunodeficiency syndrome ⚠
- p.Ser214Ter No assertion criteria hatipoglu immunodeficiency syndrome
Benign 4
- p.Pro322= Multiple submitters
- p.Thr329Met Multiple submitters ⚠
- p.Asp193= Single submitter
- p.Gly608= Single submitter
Benign/Likely benign 2
- p.Glu566Lys Multiple submitters ⚠
- p.His83= Multiple submitters
Likely benign 20
- p.Ser236Asn Multiple submitters
- c.57-4G>A Single submitter
- p.Ala43Thr Single submitter
- p.Ala781= Single submitter
- p.Ala81= Single submitter
- p.Arg649Gln Single submitter
- p.Asp42= Single submitter
- p.Gln256Lys Single submitter
- p.Glu420Gln Single submitter ⚠
- p.Leu410= Single submitter
- p.Leu691= Single submitter
- p.Lys122Arg Single submitter
- p.Phe282= Single submitter
- p.Pro632= Single submitter
- p.Ser118= Single submitter
- p.Ser312= Single submitter
- p.Thr572= Single submitter
- p.Val165= Single submitter
- p.Val589Ile Single submitter
- p.Val729= Single submitter
Uncertain significance 139
- p.Asp310Asn Multiple submitters hatipoglu immunodeficiency syndrome ⚠
- p.Lys509Arg Multiple submitters ⚠
- p.Thr301Met Multiple submitters hatipoglu immunodeficiency syndrome ⚠
- c.1013-181C>T Single submitter
- c.427-207C>A Single submitter
- p.Ala27Ser Single submitter
- p.Ala323Val Single submitter ⚠
- p.Ala384Ser Single submitter ⚠
- p.Ala393Ser Single submitter ⚠
- p.Ala45Thr Single submitter ⚠
- p.Ala473Thr Single submitter ⚠
- p.Ala659Thr Single submitter ⚠
- p.Ala81Val Single submitter ⚠
- p.Arg100His Single submitter ⚠
- p.Arg192Cys Single submitter ⚠
- p.Arg192Leu Single submitter ⚠
- p.Arg249Trp Single submitter ⚠
- p.Arg250Trp Single submitter ⚠
- p.Arg281His Single submitter ⚠
- p.Arg2Gln Single submitter
- p.Arg333Trp Single submitter ⚠
- p.Arg388Gln Single submitter ⚠
- p.Arg425Trp Single submitter ⚠
- p.Arg528Met Single submitter ⚠
- p.Arg569His Single submitter ⚠
- p.Arg619Ser Single submitter ⚠
- p.Arg645Cys Single submitter ⚠
- p.Arg645His Single submitter hatipoglu immunodeficiency syndrome ⚠
- p.Arg649Trp Single submitter ⚠
- p.Arg64Trp Single submitter ⚠
- p.Arg717Gln Single submitter ⚠
- p.Arg71Cys Single submitter ⚠
- p.Arg8Cys Single submitter
- p.Arg8His Single submitter
- p.Arg8Leu Single submitter
- p.Asn186Asp Single submitter ⚠
- p.Asn234Asp Single submitter ⚠
- p.Asn866Asp Single submitter ⚠
- p.Asp139His Single submitter ⚠
- p.Asp172Asn Single submitter ⚠
- p.Asp280Asn Single submitter ⚠
- p.Asp39Asn Single submitter ⚠
- p.Asp48His Single submitter hatipoglu immunodeficiency syndrome ⚠
- p.Asp496Asn Single submitter ⚠
- p.Asp610Glu Single submitter ⚠
- p.Asp612Asn Single submitter ⚠
- p.Asp707Asn Single submitter ⚠
- p.Asp749Asn Single submitter ⚠
- p.Asp84Asn Single submitter hatipoglu immunodeficiency syndrome ⚠
- p.Gln369Arg Single submitter ⚠
- p.Gln661Leu Single submitter ⚠
- p.Gln86Arg Single submitter ⚠
- p.Gln89Arg Single submitter ⚠
- p.Glu176Lys Single submitter ⚠
- p.Glu244Lys Single submitter ⚠
- p.Glu25Lys Single submitter
- p.Glu308Gln Single submitter ⚠
- p.Glu308Lys Single submitter ⚠
- p.Glu313Lys Single submitter ⚠
- p.Glu422Lys Single submitter ⚠
- p.Glu443Lys Single submitter ⚠
- p.Glu732Lys Single submitter ⚠
- p.Glu736Ala Single submitter ⚠
- p.Gly15Arg Single submitter
- p.Gly194Ser Single submitter ⚠
- p.Gly195Cys Single submitter ⚠
- p.Gly195Ser Single submitter ⚠
- p.Gly215Ala Single submitter ⚠
- p.Gly34Arg Single submitter ⚠
- p.Gly504Ala Single submitter ⚠
- p.Gly521Asp Single submitter ⚠
- p.Gly521Ser Single submitter ⚠
- p.Gly565Ser Single submitter ⚠
- p.Gly62Glu Single submitter ⚠
- p.Gly675Ser Single submitter ⚠
- p.Gly708Ser Single submitter ⚠
- p.Gly761Arg Single submitter ⚠
- p.Gly809Ser Single submitter ⚠
- p.His190Gln Single submitter ⚠
- p.His453Leu Single submitter ⚠
- p.His58Arg Single submitter ⚠
- p.His602Tyr Single submitter ⚠
- p.His99Tyr Single submitter ⚠
- p.Ile512Phe Single submitter ⚠
- p.Ile66Val Single submitter ⚠
- p.Leu181fs Single submitter hatipoglu immunodeficiency syndrome
- p.Leu262Pro Single submitter ⚠
- p.Leu832Phe Single submitter ⚠
- p.Lys477Asn Single submitter ⚠
- p.Lys57Asn Single submitter ⚠
- p.Lys664Glu Single submitter ⚠
- p.Met396Val Single submitter ⚠
- p.Met581Val Single submitter ⚠
- p.Phe20Ser Single submitter
- p.Phe253Tyr Single submitter ⚠
- p.Phe740Leu Single submitter ⚠
- p.Pro265Arg Single submitter ⚠
- p.Pro412Arg Single submitter ⚠
- p.Pro417Leu Single submitter ⚠
- p.Pro631Leu Single submitter ⚠
- p.Pro784Leu Single submitter ⚠
- p.Pro96Ser Single submitter ⚠
- p.Ser133Pro Single submitter ⚠
- p.Ser151Phe Single submitter ⚠
- p.Ser16Asn Single submitter
- p.Ser175Arg Single submitter ⚠
- p.Ser21Leu Single submitter
- p.Ser578Cys Single submitter ⚠
- p.Ser59Leu Single submitter ⚠
- p.Ser607Asn Single submitter ⚠
- p.Ser65Gly Single submitter ⚠
- p.Ser74Leu Single submitter ⚠
- p.Ser870Cys Single submitter ⚠
- p.Ser94Tyr Single submitter ⚠
- p.Thr144Met Single submitter ⚠
- p.Thr252Ile Single submitter ⚠
- p.Thr33Ile Single submitter ⚠
- p.Thr37Met Single submitter ⚠
- p.Thr419Ile Single submitter ⚠
- p.Thr46Arg Single submitter ⚠
- p.Thr487Ala Single submitter ⚠
- p.Thr572Met Single submitter ⚠
- p.Thr597Ala Single submitter ⚠
- p.Thr91Met Single submitter ⚠
- p.Tyr108His Single submitter ⚠
- p.Val274Ile Single submitter ⚠
- p.Val408Ile Single submitter ⚠
- p.Val489Ile Single submitter hatipoglu immunodeficiency syndrome ⚠
- p.Val542Gly Single submitter ⚠
- p.Val568Ile Single submitter ⚠
- p.Val595Met Single submitter ⚠
- p.Val601Met Single submitter ⚠
- p.Val603Ile Single submitter ⚠
- p.Val787Ile Single submitter ⚠
- p.Val802Ile Single submitter ⚠
- p.Val819Met Single submitter ⚠
- p.Val840Met Single submitter ⚠
- p.Val849Leu Single submitter ⚠
- p.Val88Gly Single submitter ⚠