DSE — 473 ClinVar variants

All ClinVar germline DSE variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 240 flagged for review →

7 Pathogenic · 8 Likely pathogenic · 14 Conflicting · 16 Benign · 10 Benign/Likely benign · 169 Likely benign · 249 Uncertain significance

Full DSE gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 240

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 156

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 156

Predictors split 78

The independent predictors disagree with each other — read with care.

All DSE variants

Pathogenic 7

  • p.Ala161fs Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Asp128_Tyr129insTer Single submitter Inborn genetic diseases
  • p.Gln136Ter Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln271fs Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln292Ter Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Arg267Gly No assertion criteria Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ser268Leu No assertion criteria Ehlers-Danlos syndrome, musculocontractural type 2

Likely pathogenic 8

  • c.416+1G>A Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala8fs Single submitter
  • p.Arg538Ter Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Arg810Ter Single submitter
  • p.Lys846fs Single submitter
  • p.Trp699Ter Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr646fs Single submitter Fetal anomalies with a likely genetic cause
  • p.Tyr697Ter Single submitter

Conflicting classifications of pathogenicity 14

  • c.-53-4G>A Single submitter
  • p.Ala461Thr Single submitter Inborn genetic diseases ⚠
  • p.Arg335His Single submitter Ehlers-Danlos syndrome, musculocontractural type 2 ⚠
  • p.Arg654Gln Single submitter Inborn genetic diseases ⚠
  • p.Arg723Gln Single submitter Inborn genetic diseases ⚠
  • p.Arg879Trp Single submitter Ehlers-Danlos syndrome, musculocontractural type 2 ⚠
  • p.Ile120Thr Single submitter Ehlers-Danlos syndrome, musculocontractural type 2 ⚠
  • p.Ile669Val Single submitter Ehlers-Danlos syndrome, musculocontractural type 2 ⚠
  • p.Lys728= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro150= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ser63= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ser729Asn Single submitter Ehlers-Danlos syndrome, musculocontractural type 2 ⚠
  • p.Tyr867= Single submitter Ehlers-Danlos syndrome
  • p.Val633Met Single submitter Inborn genetic diseases ⚠

Benign 16

Benign/Likely benign 10

  • p.Arg70His Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Cys18Phe Multiple submitters Ehlers-Danlos syndrome
  • p.Gly874del Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ile282Val Multiple submitters Ehlers-Danlos syndrome
  • p.Leu237= Multiple submitters Ehlers-Danlos syndrome
  • p.Leu778= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro34Leu Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2 ⚠
  • p.Thr25Ile Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr72= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val381Ala Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2 ⚠

Likely benign 169

  • c.1118+43G>A Multiple submitters
  • c.416+13C>T Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • c.670+12C>T Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • c.670+20A>G Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • c.671-211A>G Multiple submitters
  • c.910+20G>A Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • c.911-15A>G Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • c.911-231A>C Multiple submitters
  • c.-53-89A>G Multiple submitters
  • p.Ala161= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala260= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala295= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala312= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala426= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala461= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Arg335= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Arg810Gly Multiple submitters Ehlers-Danlos syndrome
  • p.Arg884Gln Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Asn37Ile Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Asp26= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Asp620= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln227= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln672= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Glu504= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ile909= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu391= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu46= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu551= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Phe479= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Phe48= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro407= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro497= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ser380= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ser625= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ser707Cys Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2 ⚠
  • p.Ser80= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr172= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr215= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr238= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr25= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr251= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr887= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr40= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr428= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr473= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr545= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr922= Multiple submitters Ehlers-Danlos syndrome, musculocontractural type 2
  • c.1119-20T>C Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • c.1119-285C>G Single submitter
  • c.416+11G>A Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • c.416+11G>T Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • c.416+296A>G Single submitter
  • c.417-15T>G Single submitter
  • c.417-50A>G Single submitter
  • c.670+14C>T Single submitter
  • c.670+18C>T Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • c.671-14T>C Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • c.671-286A>G Single submitter
  • c.910+10G>A Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • c.910+8G>A Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • c.910+9A>C Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • c.911-114C>T Single submitter
  • c.911-251G>A Single submitter
  • c.-59G>T Single submitter
  • c.*228T>G Single submitter
  • p.Ala110= Single submitter
  • p.Ala126= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala135= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala152= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala519= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala54= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala584= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala69= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala821= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala844= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ala926= Single submitter
  • p.Arg538= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Arg6= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Arg637= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Arg879= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Asn119= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Asn315= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Asn766= Single submitter
  • p.Asn908= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Asp791= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln200= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln277= Single submitter
  • p.Gln325= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln609= Single submitter
  • p.Gln711= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln747= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gln882= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Glu540= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gly186= Single submitter
  • p.Gly442= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gly449= Single submitter
  • p.Gly643= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gly7= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gly873= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Gly874= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.His203= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.His603= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.His64= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.His677= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ile301= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ile311= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ile607= Single submitter
  • p.Ile67= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ile790= Single submitter
  • p.Leu165= Single submitter
  • p.Leu231= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu244= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu269= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu275= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu472= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu613= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu683= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu756= Single submitter
  • p.Leu761= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu79= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu848= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu860= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu946= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Leu949= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Lys441= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Lys476= Single submitter
  • p.Lys877= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Lys92= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Phe270= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Phe417= Single submitter
  • p.Phe536= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Phe686= Single submitter
  • p.Pro288= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro322= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro34= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro355= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro384= Single submitter
  • p.Pro579= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro640= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro656= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro667= Single submitter
  • p.Pro849= Single submitter
  • p.Pro88= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro9= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Pro91= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ser81= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Ter959= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr390= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr401= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr469= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr597= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr629= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr786= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr23= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr402= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr646= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Tyr694= Single submitter
  • p.Tyr950= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val11= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val149= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val327= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val333= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val399= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val431= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val499= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val647= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val732= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Val831= Single submitter Ehlers-Danlos syndrome, musculocontractural type 2
  • p.Thr77= No assertion criteria DSE-related disorder

Uncertain significance 249