ECEL1 — 291 ClinVar variants

All ClinVar germline ECEL1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 146 flagged for review →

30 Pathogenic · 3 Pathogenic/Likely pathogenic · 28 Likely pathogenic · 15 Conflicting · 31 Benign · 7 Benign/Likely benign · 46 Likely benign · 131 Uncertain significance

Full ECEL1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 146

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 10

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 83

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 52

The independent predictors disagree with each other — read with care.

All ECEL1 variants

Pathogenic 30

  • c.1685+1G>A Multiple submitters distal arthrogryposis type 5D
  • c.966+1G>A Multiple submitters distal arthrogryposis type 5D
  • p.Ala675Thr Multiple submitters distal arthrogryposis type 5D
  • p.Arg333Ter Multiple submitters distal arthrogryposis type 5D
  • p.Gly170fs Multiple submitters distal arthrogryposis type 5D
  • p.Phe37fs Multiple submitters Inborn genetic diseases
  • p.Trp490Ter Multiple submitters distal arthrogryposis type 5D
  • p.Tyr239Ter Multiple submitters distal arthrogryposis type 5D
  • c.1059+1G>A Single submitter distal arthrogryposis type 5D
  • c.1185-2A>G Single submitter
  • c.1506+1G>A Single submitter
  • c.2151+1G>T Single submitter distal arthrogryposis type 5D
  • c.2151+2T>A Single submitter distal arthrogryposis type 5D
  • p.Cys23Ter Single submitter
  • p.Gln348fs Single submitter distal arthrogryposis type 5D
  • p.Gln568Ter Single submitter distal arthrogryposis type 5D
  • p.Glu2Ter Single submitter
  • p.Leu601fs Single submitter
  • p.Trp690Ter Single submitter distal arthrogryposis type 5D
  • p.Val558fs Single submitter distal arthrogryposis type 5D
  • c.1184+3A>T No assertion criteria distal arthrogryposis type 5D
  • c.1685+1G>T No assertion criteria distal arthrogryposis type 5D
  • p.Arg418Ser No assertion criteria distal arthrogryposis type 5D
  • p.Asn115_Ala118del No assertion criteria distal arthrogryposis type 5D
  • p.Asp266fs No assertion criteria distal arthrogryposis type 5D
  • p.Cys760Arg No assertion criteria distal arthrogryposis type 5D
  • p.Gln383Ter No assertion criteria distal arthrogryposis type 5D
  • p.Gly169fs No assertion criteria distal arthrogryposis type 5D
  • p.Ser550Ter No assertion criteria distal arthrogryposis type 5D
  • p.Tyr290Cys No assertion criteria distal arthrogryposis type 5D

Pathogenic/Likely pathogenic 3

  • p.Arg395Gln Multiple submitters distal arthrogryposis type 5D ⚠
  • p.Gln435Ter Multiple submitters distal arthrogryposis type 5D
  • p.Gly27fs Multiple submitters distal arthrogryposis type 5D

Likely pathogenic 28

Conflicting classifications of pathogenicity 15

Benign 31

Benign/Likely benign 7

Likely benign 46

Uncertain significance 131