EFEMP1 — 405 ClinVar variants

All ClinVar germline EFEMP1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 179 flagged for review →

8 Pathogenic · 2 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 10 Conflicting · 54 Benign · 4 Benign/Likely benign · 124 Likely benign · 199 Uncertain significance

Full EFEMP1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 179

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 100

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 76

The independent predictors disagree with each other — read with care.

All EFEMP1 variants

Pathogenic 8

Pathogenic/Likely pathogenic 2

  • p.Arg345Trp Multiple submitters inherited retinal dystrophy ⚠
  • p.Asp296fs Multiple submitters EFEMP1-related disorder

Likely pathogenic 4

  • p.Arg362Ter Single submitter EFEMP1-related connective tissue condition
  • p.Arg477Cys Single submitter Glaucoma 1, open angle, H
  • p.Gln41Ter Single submitter connective tissue disorder
  • p.Tyr397His Single submitter night blindness

Conflicting classifications of pathogenicity 10

  • c.761-8T>C Single submitter
  • p.Arg134Gln Single submitter Inborn genetic diseases ⚠
  • p.Arg140Trp Single submitter inherited retinal dystrophy ⚠
  • p.Asp175= Single submitter Doyne honeycomb retinal dystrophy
  • p.Asp49Ala Single submitter Doyne honeycomb retinal dystrophy ⚠
  • p.Gly474Arg Single submitter inherited retinal dystrophy ⚠
  • p.His354= Single submitter Doyne honeycomb retinal dystrophy
  • p.Ile45Thr Single submitter Doyne honeycomb retinal dystrophy ⚠
  • p.Ser471= Single submitter Doyne honeycomb retinal dystrophy
  • p.Tyr65= Single submitter Doyne honeycomb retinal dystrophy

Benign 54

Benign/Likely benign 4

  • c.640+6T>C Multiple submitters Doyne honeycomb retinal dystrophy
  • c.-64C>T Multiple submitters Doyne honeycomb retinal dystrophy
  • c.*6del Multiple submitters inherited retinal dystrophy
  • p.Tyr163= Multiple submitters Doyne honeycomb retinal dystrophy

Likely benign 124

Uncertain significance 199