EGR2 — 442 ClinVar variants

All ClinVar germline EGR2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 249 flagged for review →

12 Pathogenic · 1 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 18 Conflicting · 13 Benign · 8 Benign/Likely benign · 118 Likely benign · 268 Uncertain significance

Full EGR2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 249

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 134

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 109

The independent predictors disagree with each other — read with care.

All EGR2 variants

Pathogenic 12

  • p.Arg359Trp Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Arg381Cys Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Arg381His Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Arg381Leu Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Arg409Trp Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Glu356Lys Multiple submitters Charcot-Marie-Tooth disease type 1 ⚠
  • p.Arg359Gln Single submitter Charcot-Marie-Tooth disease type 1
  • p.Asp411Gly Single submitter Charcot-Marie-Tooth disease type 3
  • p.Glu412Gly Single submitter Charcot-Marie-Tooth disease type 1
  • p.Glu412Lys Single submitter Charcot-Marie-Tooth disease type 1
  • p.His384Arg Single submitter
  • p.His384Gln Single submitter Charcot-Marie-Tooth disease type 3

Pathogenic/Likely pathogenic 1

  • p.Arg409Gln Multiple submitters Charcot-Marie-Tooth disease type 1

Likely pathogenic 4

Conflicting classifications of pathogenicity 18

  • p.Ala278Thr Single submitter Charcot-Marie-Tooth disease type 1 ⚠
  • p.Ala306= Single submitter Inborn genetic diseases
  • p.Ala308= Single submitter Inborn genetic diseases
  • p.Ala309del Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala309dup Single submitter Inborn genetic diseases
  • p.Arg359Gly Single submitter Charcot-Marie-Tooth disease type 1 ⚠
  • p.Asp355Gly Single submitter Charcot-Marie-Tooth disease type 1D ⚠
  • p.Asp411Asn Single submitter EGR2-related disorder ⚠
  • p.Gly451Asp Single submitter Charcot-Marie-Tooth disease type 1 ⚠
  • p.Met222Thr Single submitter Inborn genetic diseases ⚠
  • p.Met64Ile Single submitter Charcot-Marie-Tooth disease type 1 ⚠
  • p.Pro264Leu Single submitter Charcot-Marie-Tooth disease type 1 ⚠
  • p.Pro465= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr153Pro Single submitter Charcot-Marie-Tooth disease type 1 ⚠
  • p.Thr215Met Single submitter Charcot-Marie-Tooth disease type 1 ⚠
  • p.Val36= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ile268Asn No assertion criteria Charcot-Marie-Tooth disease type 4E ⚠
  • p.Pro397His No assertion criteria Charcot-Marie-Tooth disease type 1D ⚠

Benign 13

Benign/Likely benign 8

  • c.*288G>A Multiple submitters Charcot-Marie-Tooth disease type 1D
  • p.Ala178= Multiple submitters Inborn genetic diseases
  • p.Ala303= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Ala467Pro Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Gly451Val Multiple submitters Charcot-Marie-Tooth disease
  • p.Gly58= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Tyr340= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Val82= Multiple submitters Charcot-Marie-Tooth disease type 1D

Likely benign 118

  • c.-1A>G Multiple submitters Charcot-Marie-Tooth disease type 1D
  • p.Ala32= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Ala42= Multiple submitters Inborn genetic diseases
  • p.Ala55= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Arg472= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Asp180= Multiple submitters Inborn genetic diseases
  • p.Asp245= Multiple submitters Inborn genetic diseases
  • p.Asp383= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Gly462= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Gly66= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Lys414= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Lys95= Multiple submitters Inborn genetic diseases
  • p.Pro169= Multiple submitters Inborn genetic diseases
  • p.Pro476= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Pro74= Multiple submitters Inborn genetic diseases
  • p.Ser70= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Thr263= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Thr272= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Thr3= Multiple submitters Inborn genetic diseases
  • p.Thr393= Multiple submitters Charcot-Marie-Tooth disease type 1
  • p.Tyr402= Multiple submitters Inborn genetic diseases
  • p.Val258= Multiple submitters Charcot-Marie-Tooth disease
  • p.Val280= Multiple submitters Charcot-Marie-Tooth disease type 1
  • c.169+13T>A Single submitter Charcot-Marie-Tooth disease type 1
  • c.169+18G>C Single submitter Charcot-Marie-Tooth disease type 1
  • c.169+19C>T Single submitter Charcot-Marie-Tooth disease type 1
  • c.169+7C>T Single submitter Charcot-Marie-Tooth disease type 1
  • c.170-10C>T Single submitter Charcot-Marie-Tooth disease type 1
  • c.170-11C>G Single submitter Charcot-Marie-Tooth disease type 1
  • c.170-14T>C Single submitter Charcot-Marie-Tooth disease type 1
  • c.170-19C>A Single submitter Charcot-Marie-Tooth disease type 1
  • c.170-19C>T Single submitter Charcot-Marie-Tooth disease type 1
  • c.170-4C>G Single submitter Charcot-Marie-Tooth disease type 1
  • c.170-8C>T Single submitter Charcot-Marie-Tooth disease type 1
  • c.-125C>T Single submitter
  • c.-211T>C Single submitter
  • c.-455C>G Single submitter
  • c.*17_*19del Single submitter
  • p.Ala128= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala139= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala187= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala242= Single submitter
  • p.Ala304= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala305= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala307= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala408= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala430= Single submitter
  • p.Ala441= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ala6= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Arg257= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Arg269= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Arg293= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Arg349= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Arg350= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Arg359= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Arg390= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Asn142= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Asp160= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Asp254= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Asp348= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Asp57= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Cys251= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Cys347= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Glu43= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Gly123= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Gly228= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Gly275= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Gly451= Single submitter Charcot-Marie-Tooth disease type 1
  • p.His336= Single submitter Charcot-Marie-Tooth disease type 1
  • p.His360= Single submitter Charcot-Marie-Tooth disease type 1
  • p.His392= Single submitter Charcot-Marie-Tooth disease type 1
  • p.His416= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ile113= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ile223= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu144= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu189= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu238= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu256= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu294= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu315= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu357= Single submitter
  • p.Leu421= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu44= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu453= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Leu466= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Lys332= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Phe188= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Phe351= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Phe398= Single submitter
  • p.Pro143= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Pro167= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Pro204= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Pro259= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Pro260= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Pro264= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Pro319= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Pro330= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Pro397= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ser210= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ser289= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ser354= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ser434= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ser442= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Ser459= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr157= Single submitter
  • p.Thr215= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr241= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr255= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr255Ser Single submitter Inborn genetic diseases
  • p.Thr267= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr281= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr333= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr440= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr452= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr475= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Thr89= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Tyr326= Single submitter Charcot-Marie-Tooth disease type 1
  • p.Tyr92= Single submitter Charcot-Marie-Tooth disease type 1

Uncertain significance 268