EIF2S3 — 86 ClinVar variants
All ClinVar germline EIF2S3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 43 flagged for review →
3 Pathogenic · 1 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 4 Conflicting · 3 Benign · 4 Benign/Likely benign · 20 Likely benign · 47 Uncertain significance
Full EIF2S3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 43
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
EIF2S3 p.Arg349Gln
Conflicting
Single submitter
MEHMO syndrome
-
EIF2S3 p.Gly335Ser
Conflicting
Single submitter
EIF2S3-related disorder
Predictors lean, ClinVar uncertain 23
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
EIF2S3 p.Arg255Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EIF2S3 p.Val245Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
- EIF2S3 p.Ala209Gly Uncertain significance Single submitter
- EIF2S3 p.Ala2Gly Uncertain significance Single submitter
- EIF2S3 p.Arg385His Uncertain significance Single submitter
- EIF2S3 p.Asp389Asn Uncertain significance Single submitter
-
EIF2S3 p.Cys96Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
EIF2S3 p.Glu295Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- EIF2S3 p.Glu306Gly Uncertain significance Single submitter
-
EIF2S3 p.Gly11Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- EIF2S3 p.Ile177Val Uncertain significance Single submitter
- EIF2S3 p.Ile318Ser Uncertain significance Single submitter
- EIF2S3 p.Lys266Ile Uncertain significance Single submitter
-
EIF2S3 p.Lys27Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- EIF2S3 p.Met310Lys Uncertain significance Single submitter
-
EIF2S3 p.Pro313Leu
Uncertain significance
Single submitter
MEHMO syndrome
-
EIF2S3 p.Ser108Arg
Uncertain significance
Single submitter
MEHMO syndrome
- EIF2S3 p.Thr22Ala Uncertain significance Single submitter
-
EIF2S3 p.Thr435Ile
Uncertain significance
Single submitter
MEHMO syndrome
-
EIF2S3 p.Thr468Arg
Uncertain significance
Single submitter
MEHMO syndrome
- EIF2S3 p.Val127Ile Uncertain significance Single submitter
- EIF2S3 p.Val437Ile Uncertain significance Single submitter
- EIF2S3 p.Val8Met Uncertain significance Single submitter
Predictors split 18
The independent predictors disagree with each other — read with care.
-
EIF2S3 p.Ser104Ala
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EIF2S3 p.Ala209Val
Uncertain significance
Single submitter
Inborn genetic diseases
- EIF2S3 p.Ala2Val Uncertain significance Single submitter
- EIF2S3 p.Asp116Gly Uncertain significance Single submitter
-
EIF2S3 p.Asp92Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
EIF2S3 p.Ile207Thr
Likely pathogenic
Single submitter
MEHMO syndrome
- EIF2S3 p.Ile224Val Uncertain significance Single submitter
-
EIF2S3 p.Ile239Met
Uncertain significance
Single submitter
MEHMO syndrome
-
EIF2S3 p.Ile36Val
Uncertain significance
Single submitter
Inborn genetic diseases
- EIF2S3 p.Leu208Phe Uncertain significance Single submitter
-
EIF2S3 p.Lys90Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
EIF2S3 p.Pro118Leu
Uncertain significance
Single submitter
MEHMO syndrome
- EIF2S3 p.Pro94Arg Uncertain significance Single submitter
- EIF2S3 p.Pro94Thr Uncertain significance Single submitter
- EIF2S3 p.Pro97Ser Uncertain significance Single submitter
- EIF2S3 p.Thr115Met Uncertain significance Single submitter
-
EIF2S3 p.Val290Met
Uncertain significance
Single submitter
MEHMO syndrome
-
EIF2S3 p.Thr22Ile
Uncertain significance
No assertion criteria
MEHMO syndrome
All EIF2S3 variants
Pathogenic 3
- p.Ile222Thr No assertion criteria MEHMO syndrome
- p.Ile259Met No assertion criteria MEHMO syndrome
- p.Pro432Ser No assertion criteria MEHMO syndrome
Pathogenic/Likely pathogenic 1
- p.Ile465fs Multiple submitters MEHMO syndrome
Likely pathogenic 4
- p.Ile207Thr Single submitter MEHMO syndrome ⚠
- p.Leu274Val Single submitter MEHMO syndrome
- p.Met145Val Single submitter MEHMO syndrome
- p.Thr144Ile Single submitter MEHMO syndrome
Conflicting classifications of pathogenicity 4
- c.1183-15A>G Single submitter MEHMO syndrome
- c.*109G>A Single submitter MEHMO syndrome
- p.Arg349Gln Single submitter MEHMO syndrome ⚠
- p.Gly335Ser Single submitter EIF2S3-related disorder ⚠
Benign 3
- p.Ala422= Multiple submitters
- p.Thr41= Multiple submitters
- p.Lys125Arg Single submitter
Benign/Likely benign 4
- c.133+8T>C Multiple submitters
- p.Asp304= Multiple submitters
- p.Gly438= Multiple submitters
- p.His33= Multiple submitters MEHMO syndrome
Likely benign 20
- c.134-4A>G Multiple submitters
- p.Asp139= Multiple submitters
- p.Leu10= Multiple submitters
- c.1012+13T>C Single submitter
- c.261+7T>C Single submitter
- c.383+3G>A Single submitter
- c.479-3T>C Single submitter
- c.867+7T>C Single submitter
- c.868-16A>G Single submitter
- p.Ala2= Single submitter
- p.Gly334= Single submitter
- p.His49= Single submitter
- p.Leu371= Single submitter
- p.Phe210= Single submitter
- p.Phe322= Single submitter
- p.Ser16= Single submitter
- p.Ser225= Single submitter
- p.Ser305Gly Single submitter intellectual disability
- p.Thr9= Single submitter
- p.Tyr102= Single submitter
Uncertain significance 47
- p.Arg255Gln Multiple submitters Inborn genetic diseases ⚠
- p.Ser104Ala Multiple submitters Inborn genetic diseases ⚠
- p.Val245Leu Multiple submitters Inborn genetic diseases ⚠
- c.134-6C>G Single submitter
- c.262-6T>G Single submitter Inborn genetic diseases
- c.867+4A>G Single submitter Inborn genetic diseases
- p.Ala209Gly Single submitter ⚠
- p.Ala209Val Single submitter Inborn genetic diseases ⚠
- p.Ala219Val Single submitter
- p.Ala2Gly Single submitter ⚠
- p.Ala2Val Single submitter ⚠
- p.Arg385His Single submitter ⚠
- p.Asp116Gly Single submitter ⚠
- p.Asp389Asn Single submitter ⚠
- p.Asp92Asn Single submitter Inborn genetic diseases ⚠
- p.Cys96Gly Single submitter Inborn genetic diseases ⚠
- p.Glu295Asp Single submitter Inborn genetic diseases ⚠
- p.Glu306Gly Single submitter ⚠
- p.Gly11Arg Single submitter
- p.Gly11Glu Single submitter Inborn genetic diseases ⚠
- p.Ile177Val Single submitter ⚠
- p.Ile224Val Single submitter ⚠
- p.Ile239Met Single submitter MEHMO syndrome ⚠
- p.Ile318Ser Single submitter ⚠
- p.Ile36Val Single submitter Inborn genetic diseases ⚠
- p.Ile47Val Single submitter
- p.Leu208Phe Single submitter ⚠
- p.Lys266Ile Single submitter ⚠
- p.Lys27Arg Single submitter Inborn genetic diseases ⚠
- p.Lys90Glu Single submitter Inborn genetic diseases ⚠
- p.Met310Lys Single submitter ⚠
- p.Pro118Leu Single submitter MEHMO syndrome ⚠
- p.Pro313Leu Single submitter MEHMO syndrome ⚠
- p.Pro94Arg Single submitter ⚠
- p.Pro94Thr Single submitter ⚠
- p.Pro97Ser Single submitter ⚠
- p.Ser108Arg Single submitter MEHMO syndrome ⚠
- p.Ser374= Single submitter
- p.Thr115Met Single submitter ⚠
- p.Thr22Ala Single submitter ⚠
- p.Thr435Ile Single submitter MEHMO syndrome ⚠
- p.Thr468Arg Single submitter MEHMO syndrome ⚠
- p.Val127Ile Single submitter ⚠
- p.Val290Met Single submitter MEHMO syndrome ⚠
- p.Val437Ile Single submitter ⚠
- p.Val8Met Single submitter ⚠
- p.Thr22Ile No assertion criteria MEHMO syndrome ⚠