EML1 — 237 ClinVar variants
All ClinVar germline EML1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 96 flagged for review →
7 Pathogenic · 3 Likely pathogenic · 52 Benign · 1 Benign/Likely benign · 73 Likely benign · 101 Uncertain significance
Full EML1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 96
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 53
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
EML1 p.Cys369Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EML1 p.Gln409Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EML1 p.His351Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EML1 p.Lys119Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EML1 p.Val688Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EML1 p.Ala251Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ala26Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ala26Val
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Ala344Val Uncertain significance Single submitter
-
EML1 p.Ala567Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Ala74Ser Uncertain significance Single submitter
-
EML1 p.Arg283Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg37Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg65Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg774Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Asn314Ser
Uncertain significance
Single submitter
band heterotopia of brain
-
EML1 p.Asn341Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Asn406Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Asn98Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Asp624Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Asp647Glu Uncertain significance Single submitter
-
EML1 p.Asp758Asn
Uncertain significance
Single submitter
band heterotopia of brain
-
EML1 p.Asp759Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Cys561Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Cys704Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Glu627Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Gly116Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Gly293Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Gly430Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Gly457Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Gly489Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Gly602Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Gly659Arg Uncertain significance Single submitter
-
EML1 p.Gly692Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Gly782Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.His552Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ile463Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ile583Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ile68Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Lys213Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Lys752Thr Uncertain significance Single submitter
-
EML1 p.Met47Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Pro114Ala Uncertain significance Single submitter
-
EML1 p.Pro281Thr
Uncertain significance
Single submitter
band heterotopia of brain
-
EML1 p.Pro769Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ser486Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Thr497Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Thr530Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Thr539Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Thr713Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Tyr227Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Val708Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Val790Ala
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 43
The independent predictors disagree with each other — read with care.
-
EML1 p.Arg192His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EML1 p.Arg450Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
EML1 p.Arg813His
Uncertain significance
Multiple submitters
Inborn genetic diseases
- EML1 p.Gly109Asp Benign Multiple submitters
- EML1 p.Ala292Val Uncertain significance Single submitter
-
EML1 p.Ala373Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ala58Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg155Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg157His
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg523Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg576His
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg633Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Arg813Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Asn258Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Asn440Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Asp350Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Asp515Asn Likely benign Single submitter
-
EML1 p.Asp51Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Asp534Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Glu717Ala Uncertain significance Single submitter
-
EML1 p.Glu717Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Gly143Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.His728Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.His749Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ile387Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ile650Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Leu41Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Leu474Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Leu59Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Lys56Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Pro500Leu Uncertain significance Single submitter
-
EML1 p.Ser147Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Ser295Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Thr197Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Thr312Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Thr35Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- EML1 p.Thr382Met Uncertain significance Single submitter
-
EML1 p.Val247Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Val253Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Val655Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Val729Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Val787Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
EML1 p.Val745Ile
Uncertain significance
No assertion criteria
band heterotopia of brain
All EML1 variants
Pathogenic 7
- c.1820+1G>C Single submitter band heterotopia of brain
- c.547+1G>T Single submitter
- p.Ala572fs Single submitter
- p.Arg523Ter Single submitter band heterotopia of brain
- p.Ser252fs Single submitter
- p.Arg138Ter No assertion criteria band heterotopia of brain
- p.Trp225Arg No assertion criteria band heterotopia of brain
Likely pathogenic 3
- p.Arg633Ter Single submitter band heterotopia of brain
- p.Gln46Ter Single submitter band heterotopia of brain
- p.Thr243Ala Single submitter band heterotopia of brain
Benign 52
- c.1104+113G>A Multiple submitters
- c.1240-77C>T Multiple submitters
- c.1339+37G>A Multiple submitters
- c.1753-156C>G Multiple submitters
- c.1820+46A>C Multiple submitters
- c.2096-87A>G Multiple submitters
- c.2191+102T>C Multiple submitters
- c.2322+93C>T Multiple submitters
- c.2323-131T>A Multiple submitters
- c.250+100G>A Multiple submitters
- c.250+4G>A Multiple submitters
- c.384-124T>C Multiple submitters
- c.384-3388A>C Multiple submitters
- c.384-3392A>G Multiple submitters
- c.518+96G>C Multiple submitters
- c.518+9G>A Multiple submitters
- c.547+79C>T Multiple submitters
- c.548-111A>G Multiple submitters
- c.678-146T>C Multiple submitters
- c.827+40G>C Multiple submitters
- c.827+41A>G Multiple submitters
- p.Ala377Val Multiple submitters
- p.Asp50= Multiple submitters
- p.Asp571= Multiple submitters
- p.Gly109Asp Multiple submitters ⚠
- p.Pro92= Multiple submitters band heterotopia of brain
- p.Ser556Pro Multiple submitters band heterotopia of brain
- p.Thr218= Multiple submitters
- p.Val598= Multiple submitters
- c.1340-211A>G Single submitter
- c.1495-120A>T Single submitter
- c.1495-226G>A Single submitter
- c.1752+16A>G Single submitter
- c.1753-86TG[2] Single submitter
- c.1820+16C>T Single submitter
- c.2095+144G>A Single submitter
- c.2095+157G>T Single submitter
- c.2095+18del Single submitter
- c.2191+8T>G Single submitter
- c.2192-15T>C Single submitter
- c.251-196G>A Single submitter
- c.384-172C>T Single submitter
- c.518+14A>G Single submitter
- c.677+210C>T Single submitter
- c.678-216T>C Single submitter
- c.678-228A>C Single submitter
- c.828-167T>C Single submitter
- c.897+9C>T Single submitter
- p.Asn349= Single submitter
- p.Ser115= Single submitter
- p.Thr497= Single submitter
- p.Thr740= Single submitter
Benign/Likely benign 1
- p.Thr663= Multiple submitters
Likely benign 73
- p.Asp273= Multiple submitters
- p.His749Arg Multiple submitters
- p.Leu484= Multiple submitters
- p.Thr294= Multiple submitters
- p.Thr69= Multiple submitters
- c.1009-10T>G Single submitter
- c.1105-19G>A Single submitter
- c.1340-5T>C Single submitter
- c.1494+11A>G Single submitter
- c.1495-14A>G Single submitter
- c.1820+10T>C Single submitter
- c.1820+17A>G Single submitter
- c.1820+7C>G Single submitter
- c.1909+16A>G Single submitter
- c.2007+7G>A Single submitter
- c.2008-18A>G Single submitter
- c.2095+14C>T Single submitter
- c.2096-15G>T Single submitter
- c.2322+12G>A Single submitter
- c.2323-19C>T Single submitter
- c.251-8T>C Single submitter
- c.383+11A>G Single submitter
- c.384-9C>T Single submitter
- c.518+15T>C Single submitter
- c.548-4G>A Single submitter
- c.67+20G>A Single submitter
- c.677+10A>G Single submitter
- c.677+15T>C Single submitter
- c.828-10C>A Single submitter
- p.Ala278= Single submitter
- p.Ala510= Single submitter
- p.Ala74= Single submitter
- p.Arg65= Single submitter
- p.Asn271= Single submitter
- p.Asn99= Single submitter
- p.Asp515Asn Single submitter ⚠
- p.Asp534= Single submitter
- p.Asp738= Single submitter
- p.Asp758= Single submitter
- p.Cys770= Single submitter
- p.Glu627= Single submitter
- p.Glu735= Single submitter
- p.Gly410= Single submitter
- p.Gly520= Single submitter
- p.Gly574= Single submitter
- p.Gly781= Single submitter
- p.Gly803= Single submitter
- p.His351= Single submitter
- p.Ile250= Single submitter
- p.Leu313= Single submitter
- p.Leu629= Single submitter
- p.Pro577= Single submitter
- p.Ser252= Single submitter
- p.Ser295= Single submitter
- p.Ser488= Single submitter
- p.Ser771= Single submitter
- p.Thr285= Single submitter
- p.Thr382= Single submitter
- p.Thr620= Single submitter
- p.Thr802= Single submitter
- p.Thr96= Single submitter
- p.Tyr267= Single submitter
- p.Tyr694= Single submitter
- p.Val345= Single submitter
- p.Val601= Single submitter
- p.Val707= Single submitter
- p.Val790= Single submitter Inborn genetic diseases
- c.519-9T>C No assertion criteria EML1-related disorder
- c.67+6G>C No assertion criteria EML1-related disorder
- p.Arg85= No assertion criteria EML1-related disorder
- p.His317= No assertion criteria EBV-positive nodal T- and NK-cell lymphoma
- p.Leu466= No assertion criteria EML1-related disorder
- p.Pro242= No assertion criteria EML1-related disorder
Uncertain significance 101
- p.Arg192His Multiple submitters Inborn genetic diseases ⚠
- p.Arg450Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg813His Multiple submitters Inborn genetic diseases ⚠
- p.Cys369Phe Multiple submitters Inborn genetic diseases ⚠
- p.Gln409Glu Multiple submitters Inborn genetic diseases ⚠
- p.His351Gln Multiple submitters Inborn genetic diseases ⚠
- p.Lys119Arg Multiple submitters Inborn genetic diseases ⚠
- p.Val688Met Multiple submitters Inborn genetic diseases ⚠
- c.250+6C>T Single submitter
- c.384-3507C>T Single submitter Inborn genetic diseases
- c.384-3513A>C Single submitter Inborn genetic diseases
- c.384-3513A>G Single submitter Inborn genetic diseases
- c.384-3519A>G Single submitter Inborn genetic diseases
- p.Ala251Thr Single submitter Inborn genetic diseases ⚠
- p.Ala26Thr Single submitter Inborn genetic diseases ⚠
- p.Ala26Val Single submitter Inborn genetic diseases ⚠
- p.Ala292Val Single submitter ⚠
- p.Ala344Val Single submitter ⚠
- p.Ala373Thr Single submitter Inborn genetic diseases ⚠
- p.Ala567Thr Single submitter Inborn genetic diseases ⚠
- p.Ala58Gly Single submitter Inborn genetic diseases ⚠
- p.Ala74Ser Single submitter ⚠
- p.Arg155Trp Single submitter Inborn genetic diseases ⚠
- p.Arg157His Single submitter Inborn genetic diseases ⚠
- p.Arg283Gln Single submitter Inborn genetic diseases ⚠
- p.Arg37Cys Single submitter Inborn genetic diseases ⚠
- p.Arg523Gln Single submitter Inborn genetic diseases ⚠
- p.Arg576His Single submitter Inborn genetic diseases ⚠
- p.Arg633Gln Single submitter Inborn genetic diseases ⚠
- p.Arg65Trp Single submitter Inborn genetic diseases ⚠
- p.Arg774Met Single submitter Inborn genetic diseases ⚠
- p.Arg813Cys Single submitter Inborn genetic diseases ⚠
- p.Asn258Asp Single submitter Inborn genetic diseases ⚠
- p.Asn314Ser Single submitter band heterotopia of brain ⚠
- p.Asn341Ser Single submitter Inborn genetic diseases ⚠
- p.Asn406Ser Single submitter Inborn genetic diseases ⚠
- p.Asn440Ser Single submitter Inborn genetic diseases ⚠
- p.Asn98Ser Single submitter Inborn genetic diseases ⚠
- p.Asp350Asn Single submitter Inborn genetic diseases ⚠
- p.Asp51Asn Single submitter Inborn genetic diseases ⚠
- p.Asp534Tyr Single submitter Inborn genetic diseases ⚠
- p.Asp624Gly Single submitter Inborn genetic diseases ⚠
- p.Asp647Glu Single submitter ⚠
- p.Asp758Asn Single submitter band heterotopia of brain ⚠
- p.Asp759Asn Single submitter Inborn genetic diseases ⚠
- p.Cys561Ser Single submitter Inborn genetic diseases ⚠
- p.Cys704Tyr Single submitter Inborn genetic diseases ⚠
- p.Glu627Gln Single submitter Inborn genetic diseases ⚠
- p.Glu717Ala Single submitter ⚠
- p.Glu717Gly Single submitter Inborn genetic diseases ⚠
- p.Gly116Ala Single submitter Inborn genetic diseases ⚠
- p.Gly143Asp Single submitter Inborn genetic diseases ⚠
- p.Gly293Asp Single submitter Inborn genetic diseases ⚠
- p.Gly430Asp Single submitter Inborn genetic diseases ⚠
- p.Gly457Arg Single submitter Inborn genetic diseases ⚠
- p.Gly489Val Single submitter Inborn genetic diseases ⚠
- p.Gly602Ala Single submitter Inborn genetic diseases ⚠
- p.Gly659Arg Single submitter ⚠
- p.Gly692Arg Single submitter Inborn genetic diseases ⚠
- p.Gly782Arg Single submitter Inborn genetic diseases ⚠
- p.His552Arg Single submitter Inborn genetic diseases ⚠
- p.His728Arg Single submitter Inborn genetic diseases ⚠
- p.His749Tyr Single submitter Inborn genetic diseases ⚠
- p.Ile387Met Single submitter Inborn genetic diseases ⚠
- p.Ile463Val Single submitter Inborn genetic diseases ⚠
- p.Ile583Met Single submitter Inborn genetic diseases ⚠
- p.Ile650Val Single submitter Inborn genetic diseases ⚠
- p.Ile68Val Single submitter Inborn genetic diseases ⚠
- p.Leu41Val Single submitter Inborn genetic diseases ⚠
- p.Leu474Val Single submitter Inborn genetic diseases ⚠
- p.Leu59Val Single submitter Inborn genetic diseases ⚠
- p.Lys213Arg Single submitter Inborn genetic diseases ⚠
- p.Lys56Arg Single submitter Inborn genetic diseases ⚠
- p.Lys752Thr Single submitter ⚠
- p.Met47Leu Single submitter Inborn genetic diseases ⚠
- p.Pro114Ala Single submitter ⚠
- p.Pro281Thr Single submitter band heterotopia of brain ⚠
- p.Pro500Leu Single submitter ⚠
- p.Pro769Ser Single submitter Inborn genetic diseases ⚠
- p.Ser147Asn Single submitter Inborn genetic diseases ⚠
- p.Ser295Leu Single submitter Inborn genetic diseases ⚠
- p.Ser486Thr Single submitter Inborn genetic diseases ⚠
- p.Ser669= Single submitter
- p.Thr197Ala Single submitter Inborn genetic diseases ⚠
- p.Thr312Ile Single submitter Inborn genetic diseases ⚠
- p.Thr35Ile Single submitter Inborn genetic diseases ⚠
- p.Thr382Met Single submitter ⚠
- p.Thr497Met Single submitter Inborn genetic diseases ⚠
- p.Thr530Ser Single submitter Inborn genetic diseases ⚠
- p.Thr539Ala Single submitter Inborn genetic diseases ⚠
- p.Thr713Ile Single submitter Inborn genetic diseases ⚠
- p.Trp308Ter Single submitter
- p.Tyr227Cys Single submitter Inborn genetic diseases ⚠
- p.Val247Ile Single submitter Inborn genetic diseases ⚠
- p.Val253Met Single submitter Inborn genetic diseases ⚠
- p.Val655Ile Single submitter Inborn genetic diseases ⚠
- p.Val708Ile Single submitter Inborn genetic diseases ⚠
- p.Val729Ile Single submitter Inborn genetic diseases ⚠
- p.Val787Ile Single submitter Inborn genetic diseases ⚠
- p.Val790Ala Single submitter Inborn genetic diseases ⚠
- p.Val745Ile No assertion criteria band heterotopia of brain ⚠