EMP2 — 111 ClinVar variants
All ClinVar germline EMP2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 42 flagged for review →
1 Pathogenic · 2 Likely pathogenic · 1 Conflicting · 23 Benign · 2 Benign/Likely benign · 39 Likely benign · 43 Uncertain significance
Full EMP2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 42
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 29
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- EMP2 p.Ala78Thr Uncertain significance Multiple submitters
- EMP2 p.Arg120His Uncertain significance Multiple submitters
-
EMP2 p.Arg166His
Uncertain significance
Multiple submitters
nephrotic syndrome, type 10
- EMP2 p.Glu121Lys Uncertain significance Multiple submitters
- EMP2 p.Thr43Ile Uncertain significance Multiple submitters
-
EMP2 p.Tyr143His
Uncertain significance
Multiple submitters
nephrotic syndrome, type 10
- EMP2 p.Ala112Thr Uncertain significance Single submitter
- EMP2 p.Ala128Glu Uncertain significance Single submitter
- EMP2 p.Ala128Val Uncertain significance Single submitter
- EMP2 p.Ala66Thr Uncertain significance Single submitter
- EMP2 p.Arg120Cys Uncertain significance Single submitter
- EMP2 p.Arg135Thr Uncertain significance Single submitter
- EMP2 p.Arg94Met Uncertain significance Single submitter
- EMP2 p.Asn44Ile Uncertain significance Single submitter
- EMP2 p.Asn45Thr Uncertain significance Single submitter
- EMP2 p.Asp25Asn Uncertain significance Single submitter
- EMP2 p.Cys48Tyr Uncertain significance Single submitter
- EMP2 p.Gln65His Uncertain significance Single submitter
- EMP2 p.Ile101Val Uncertain significance Single submitter
- EMP2 p.Ile115Val Uncertain significance Single submitter
- EMP2 p.Ile123Val Uncertain significance Single submitter
- EMP2 p.Met158Val Uncertain significance Single submitter
- EMP2 p.Met68Lys Uncertain significance Single submitter
- EMP2 p.Phe130Leu Uncertain significance Single submitter
- EMP2 p.Ser114Phe Uncertain significance Single submitter
- EMP2 p.Ser156Cys Uncertain significance Single submitter
- EMP2 p.Tyr116Cys Uncertain significance Single submitter
- EMP2 p.Val83Met Uncertain significance Single submitter
- EMP2 p.Tyr141Cys Uncertain significance No assertion criteria
Predictors split 12
The independent predictors disagree with each other — read with care.
-
EMP2 p.Ala63Val
Uncertain significance
Multiple submitters
nephrotic syndrome, type 10
- EMP2 p.Ile69Met Uncertain significance Multiple submitters
-
EMP2 p.Ala10Thr
Uncertain significance
Single submitter
nephrotic syndrome, type 10
- EMP2 p.Ala151Pro Uncertain significance Single submitter
- EMP2 p.Arg88Cys Uncertain significance Single submitter
- EMP2 p.Arg88Leu Uncertain significance Single submitter
- EMP2 p.Asp37Gly Uncertain significance Single submitter
- EMP2 p.Gly31Arg Uncertain significance Single submitter
- EMP2 p.Leu18Phe Uncertain significance Single submitter
- EMP2 p.Met159Val Uncertain significance Single submitter
- EMP2 p.Thr60Met Uncertain significance Single submitter
-
EMP2 p.Phe7Leu
Pathogenic
No assertion criteria
nephrotic syndrome, type 10
All EMP2 variants
Likely pathogenic 2
- c.78+1G>C Single submitter nephrotic syndrome, type 10
- p.Trp29_Val30delinsTer Single submitter nephrotic syndrome, type 10
Conflicting classifications of pathogenicity 1
- p.Val133Met Single submitter ⚠
Benign 23
- c.169+9G>C Multiple submitters
- c.170-14C>T Multiple submitters nephrotic syndrome, type 10
- c.170-54A>G Multiple submitters
- c.317-136T>C Multiple submitters
- c.78+50A>G Multiple submitters
- c.79-144C>T Multiple submitters
- c.79-173C>T Multiple submitters
- c.79-91T>C Multiple submitters
- c.*131A>G Multiple submitters
- c.*141A>G Multiple submitters
- p.Ala63= Multiple submitters
- c.170-151G>A Single submitter
- c.170-198A>G Single submitter
- c.170-234G>A Single submitter
- c.170-282G>A Single submitter
- c.316+148TG[11] Single submitter
- c.-60-172T>C Single submitter
- c.*141_*142insG Single submitter
- c.*147_*152dup Single submitter
- c.*164del Single submitter
- c.*172G>C Single submitter
- p.Ile9= Single submitter
- p.Thr60= Single submitter
Benign/Likely benign 2
- p.Ile51Val Multiple submitters
- p.Thr134= Multiple submitters
Likely benign 39
- c.-6G>T Multiple submitters
- c.*140A>G Multiple submitters
- c.*98G>A Multiple submitters
- p.Thr23= Multiple submitters
- c.169+12T>A Single submitter
- c.169+7G>A Single submitter
- c.170-126G>A Single submitter
- c.170-12C>A Single submitter
- c.170-131T>A Single submitter
- c.170-17C>T Single submitter
- c.316+148TG[12] Single submitter
- c.316+14C>T Single submitter
- c.316+248G>A Single submitter
- c.316+9A>C Single submitter
- c.78+20A>G Single submitter
- c.79-14A>G Single submitter
- c.*132A>G Single submitter
- c.*137A>G Single submitter
- c.*142_*145A[4]GAAAA[1] Single submitter
- p.Ala10= Single submitter
- p.Cys76= Single submitter
- p.Ile144= Single submitter
- p.Ile155= Single submitter
- p.Ile81= Single submitter
- p.Lys167= Single submitter
- p.Phe79= Single submitter
- p.Phe82= Single submitter
- p.Phe95= Single submitter
- p.Pro132= Single submitter
- p.Ser156= Single submitter
- p.Thr43= Single submitter
- p.Thr46= Single submitter
- p.Tyr139= Single submitter
- p.Val24= Single submitter
- p.Val24Ile Single submitter
- c.*9A>G No assertion criteria EMP2-related disorder
- p.Ile73= No assertion criteria EMP2-related disorder
- p.Thr153= No assertion criteria EMP2-related disorder
- p.Thr98= No assertion criteria EMP2-related disorder
Uncertain significance 43
- p.Ala63Val Multiple submitters nephrotic syndrome, type 10 ⚠
- p.Ala78Thr Multiple submitters ⚠
- p.Arg120His Multiple submitters ⚠
- p.Arg166His Multiple submitters nephrotic syndrome, type 10 ⚠
- p.Glu121Lys Multiple submitters ⚠
- p.Ile69Met Multiple submitters ⚠
- p.Thr43Ile Multiple submitters ⚠
- p.Tyr143His Multiple submitters nephrotic syndrome, type 10 ⚠
- c.316+4A>G Single submitter
- p.Ala10Thr Single submitter nephrotic syndrome, type 10 ⚠
- p.Ala112Thr Single submitter ⚠
- p.Ala128Glu Single submitter ⚠
- p.Ala128Val Single submitter ⚠
- p.Ala151Pro Single submitter ⚠
- p.Ala66Thr Single submitter ⚠
- p.Arg120Cys Single submitter ⚠
- p.Arg135Thr Single submitter ⚠
- p.Arg88Cys Single submitter ⚠
- p.Arg88Leu Single submitter ⚠
- p.Arg94Met Single submitter ⚠
- p.Asn44Ile Single submitter ⚠
- p.Asn45Thr Single submitter ⚠
- p.Asp25Asn Single submitter ⚠
- p.Asp37Gly Single submitter ⚠
- p.Cys48Tyr Single submitter ⚠
- p.Gln62Ter Single submitter nephrotic syndrome, type 10
- p.Gln65His Single submitter ⚠
- p.Gly31Arg Single submitter ⚠
- p.Ile101Val Single submitter ⚠
- p.Ile115Val Single submitter ⚠
- p.Ile123Val Single submitter ⚠
- p.Leu18Phe Single submitter ⚠
- p.Met158Val Single submitter ⚠
- p.Met159Val Single submitter ⚠
- p.Met68Lys Single submitter ⚠
- p.Phe130Leu Single submitter ⚠
- p.Ser114Phe Single submitter ⚠
- p.Ser156Cys Single submitter ⚠
- p.Thr60Met Single submitter ⚠
- p.Tyr116Cys Single submitter ⚠
- p.Val83Met Single submitter ⚠
- c.78+1G>A No assertion criteria
- p.Tyr141Cys No assertion criteria ⚠