EYA1 — 768 ClinVar variants

All ClinVar germline EYA1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 234 flagged for review →

125 Pathogenic · 11 Pathogenic/Likely pathogenic · 83 Likely pathogenic · 43 Conflicting · 54 Benign · 25 Benign/Likely benign · 134 Likely benign · 293 Uncertain significance

Full EYA1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 234

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 28

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 164

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 164

Predictors split 40

The independent predictors disagree with each other — read with care.

All EYA1 variants

Pathogenic 125

  • c.1050+1G>T Multiple submitters branchio-oto-renal syndrome
  • c.1051-2A>G Multiple submitters branchio-oto-renal syndrome
  • c.1200-1G>A Multiple submitters branchio-oto-renal syndrome
  • c.1361-1G>A Multiple submitters branchio-oto-renal syndrome
  • c.1475+1G>C Multiple submitters Rare genetic deafness
  • c.1698+1G>T Multiple submitters branchio-oto-renal syndrome
  • c.966+1G>A Multiple submitters EYA1-related disorders
  • c.966+5G>A Multiple submitters EYA1-related disorders
  • p.Arg294Ter Multiple submitters branchiootorenal syndrome 1
  • p.Arg297Ter Multiple submitters EYA1-related disorder
  • p.Arg308Ter Multiple submitters EYA1-related disorders
  • p.Arg361Ter Multiple submitters EYA1-related disorder
  • p.Cys419fs Multiple submitters branchiootic syndrome 1
  • p.Gln228Ter Multiple submitters branchiootorenal syndrome 1
  • p.Gln397Ter Multiple submitters branchio-oto-renal syndrome
  • p.Ser201Ter Multiple submitters branchio-oto-renal syndrome
  • p.Trp430Ter Multiple submitters branchio-oto-renal syndrome
  • p.Val496fs Multiple submitters branchio-oto-renal syndrome
  • c.1050+4A>G Single submitter branchio-oto-renal syndrome
  • c.1140+1G>A Single submitter branchiootic syndrome 1
  • c.1140+1G>T Single submitter branchio-oto-renal syndrome
  • c.1200-1G>C Single submitter branchiootorenal syndrome 1
  • c.1200-2A>G Single submitter branchio-oto-renal syndrome
  • c.1360+1G>A Single submitter branchiootorenal syndrome 1
  • c.1361-1G>T Single submitter Rare genetic deafness
  • c.1476-2A>T Single submitter branchio-oto-renal syndrome
  • c.1597+1G>C Single submitter
  • c.1598-1G>C Single submitter branchio-oto-renal syndrome
  • c.1598-2A>G Single submitter branchio-oto-renal syndrome
  • c.1598-2del Single submitter branchiootic syndrome 1
  • c.(?_1598-56 Single submitter Rare genetic deafness
  • c.1699-1G>A Single submitter EYA1-related disorders
  • c.557-2A>T Single submitter
  • c.639+1G>A Single submitter branchio-oto-renal syndrome
  • c.966+1G>C Single submitter EYA1-related disorders
  • c.(?_-66 Single submitter Rare genetic deafness
  • p.Ala178fs Single submitter branchio-oto-renal syndrome
  • p.Ala269fs Single submitter branchio-oto-renal syndrome
  • p.Ala413fs Single submitter branchio-oto-renal syndrome
  • p.Ala473fs Single submitter branchio-oto-renal syndrome
  • p.Arg308fs Single submitter branchio-oto-renal syndrome
  • p.Arg425fs Single submitter branchio-oto-renal syndrome
  • p.Arg439fs Single submitter branchio-oto-renal syndrome
  • p.Arg492fs Single submitter branchiootorenal syndrome 1
  • p.Arg540fs Single submitter branchio-oto-renal syndrome
  • p.Asn231fs Single submitter branchio-oto-renal syndrome
  • p.Asn310fs Single submitter branchiootorenal syndrome 1
  • p.Asn395Ter Single submitter branchio-oto-renal syndrome
  • p.Asn417Ter Single submitter branchio-oto-renal syndrome
  • p.Asp429fs Single submitter
  • p.Asp476fs Single submitter branchiootic syndrome 1
  • p.Cys537Ter Single submitter branchiootorenal syndrome 1
  • p.Gln113fs Single submitter branchio-oto-renal syndrome
  • p.Gln119Ter Single submitter branchio-oto-renal syndrome
  • p.Gln132fs Single submitter Rare genetic deafness
  • p.Gln156Ter Single submitter branchio-oto-renal syndrome
  • p.Gln183Ter Single submitter branchio-oto-renal syndrome
  • p.Gln212Ter Single submitter
  • p.Gln504Ter Single submitter branchiootic syndrome 1
  • p.Gln543Ter Single submitter branchio-oto-renal syndrome
  • p.Gln562Ter Single submitter branchio-oto-renal syndrome
  • p.Gln81Ter Single submitter Rare genetic deafness
  • p.Glu364fs Single submitter Monogenic hearing loss
  • p.Glu364Ter Single submitter Rare genetic deafness
  • p.Glu380Ter Single submitter EYA1-related disorders
  • p.Glu443fs Single submitter branchio-oto-renal syndrome
  • p.Glu470Ter Single submitter branchiootic syndrome 1
  • p.Glu524fs Single submitter branchio-oto-renal syndrome
  • p.Gly150fs Single submitter branchiootorenal syndrome 1
  • p.Gly224fs Single submitter branchiootorenal syndrome 1
  • p.Gly305fs Single submitter branchiootorenal syndrome 1
  • p.Gly396Ter Single submitter branchio-oto-renal syndrome
  • p.His373fs Single submitter
  • p.His567fs Single submitter branchio-oto-renal syndrome
  • p.His585fs Single submitter branchio-oto-renal syndrome
  • p.Ile471fs Single submitter
  • p.Ile498_Leu499insTer Single submitter Anhydramnios
  • p.Ile523fs Single submitter branchio-oto-renal syndrome
  • p.Leu164fs Single submitter branchio-oto-renal syndrome
  • p.Leu202fs Single submitter
  • p.Leu374fs Single submitter Rare genetic deafness
  • p.Leu420fs Single submitter branchiootorenal syndrome 1
  • p.Lys442fs Single submitter branchio-oto-renal syndrome
  • p.Lys511Ter Single submitter
  • p.Lys566fs Single submitter Rare genetic deafness
  • p.Met362fs Single submitter branchio-oto-renal syndrome
  • p.Phe325fs Single submitter branchiootorenal syndrome 1
  • p.Phe375fs Single submitter branchiootorenal syndrome 1
  • p.Phe545fs Single submitter branchio-oto-renal syndrome
  • p.Pro261fs Single submitter branchio-oto-renal syndrome
  • p.Pro317fs Single submitter branchio-oto-renal syndrome
  • p.Ser157Ter Single submitter branchio-oto-renal syndrome
  • p.Ser211Ter Single submitter branchiootorenal syndrome 1
  • p.Ser282fs Single submitter
  • p.Ser299Ter Single submitter Rare genetic deafness
  • p.Ser338fs Single submitter branchio-oto-renal syndrome
  • p.Ser487Pro Single submitter branchio-oto-renal syndrome
  • p.Ser487Ter Single submitter branchio-oto-renal syndrome
  • p.Trp143Ter Single submitter Rare genetic deafness
  • p.Trp327Ter Single submitter branchiootorenal syndrome 1
  • p.Trp464Ter Single submitter branchiootorenal syndrome 1
  • p.Trp478Ter Single submitter branchio-oto-renal syndrome
  • p.Trp572Ter Single submitter branchiootorenal syndrome 1
  • p.Tyr134Ter Single submitter branchio-oto-renal syndrome
  • p.Tyr218Ter Single submitter branchio-oto-renal syndrome
  • p.Tyr226Ter Single submitter branchio-oto-renal syndrome
  • p.Tyr239Ter Single submitter EYA1-related disorder
  • p.Tyr344fs Single submitter
  • p.Tyr445Ter Single submitter branchiootorenal syndrome 1
  • p.Tyr515Ter Single submitter branchio-oto-renal syndrome
  • p.Tyr591fs Single submitter branchio-oto-renal syndrome
  • p.Val452fs Single submitter branchio-oto-renal syndrome
  • p.Val549fs Single submitter branchio-oto-renal syndrome
  • p.Val553del Single submitter branchio-oto-renal syndrome
  • c.557del No assertion criteria branchio-oto-renal syndrome
  • c.639+2T>G No assertion criteria branchiootic syndrome 1
  • c.639+98_760del No assertion criteria branchiootic syndrome 1
  • p.Arg547Gly No assertion criteria Anterior segment anomalies and cataract
  • p.Asn451fs No assertion criteria branchiootorenal syndrome 1
  • p.Glu363Lys No assertion criteria Abnormal anterior chamber morphology
  • p.Gly533Arg No assertion criteria
  • p.Leu505Arg No assertion criteria branchiootorenal syndrome 1
  • p.Lys565fs No assertion criteria branchiootorenal syndrome 1
  • p.Pro133fs No assertion criteria branchiootic syndrome 1
  • p.Thr501fs No assertion criteria branchiootic syndrome 1

Pathogenic/Likely pathogenic 11

  • c.1199+1G>A Multiple submitters branchio-oto-renal syndrome
  • c.1360+5G>A Multiple submitters branchio-oto-renal syndrome
  • c.1597+1G>A Multiple submitters branchiootic syndrome 1
  • c.418+1G>A Multiple submitters EYA1-related disorders
  • c.640-15_698del Multiple submitters branchio-oto-renal syndrome
  • p.Arg440Gln Multiple submitters EYA1-related disorders
  • p.Arg77Ter Multiple submitters branchio-oto-renal syndrome
  • p.Gln213Ter Multiple submitters branchio-oto-renal syndrome
  • p.Gln259Ter Multiple submitters branchiootorenal syndrome 1
  • p.Tyr348Ter Multiple submitters branchio-oto-renal syndrome
  • p.Tyr448Ter Multiple submitters branchio-oto-renal syndrome

Likely pathogenic 83

Conflicting classifications of pathogenicity 43

Benign 54

Benign/Likely benign 25

  • c.1141-15T>G Multiple submitters branchio-oto-renal syndrome
  • c.1199+13G>T Multiple submitters branchio-oto-renal syndrome
  • c.1200-11C>A Multiple submitters otofaciocervical syndrome 1
  • c.1475+15G>A Multiple submitters branchiootic syndrome 1
  • c.1597+18T>C Multiple submitters branchio-oto-renal syndrome
  • c.1598-15A>G Multiple submitters branchio-oto-renal syndrome
  • c.1699-3C>T Multiple submitters branchio-oto-renal syndrome
  • c.557-11T>A Multiple submitters branchio-oto-renal syndrome
  • c.639+17G>C Multiple submitters branchiootic syndrome 1
  • c.966+4C>T Multiple submitters otofaciocervical syndrome 1
  • c.-191C>G Multiple submitters otofaciocervical syndrome 1
  • c.*102T>G Multiple submitters otofaciocervical syndrome 1
  • c.*23G>A Multiple submitters branchiootic syndrome 1
  • p.Ala107= Multiple submitters branchiootorenal syndrome 1
  • p.Ala459= Multiple submitters branchio-oto-renal syndrome
  • p.Arg296His Multiple submitters branchio-oto-renal syndrome
  • p.Arg308Gln Multiple submitters otofaciocervical syndrome 1
  • p.Asn395= Multiple submitters branchio-oto-renal syndrome
  • p.Ile280= Multiple submitters branchio-oto-renal syndrome
  • p.Pro216= Multiple submitters otofaciocervical syndrome 1
  • p.Pro234= Multiple submitters branchio-oto-renal syndrome
  • p.Ser49= Multiple submitters branchio-oto-renal syndrome
  • p.Ser578= Multiple submitters branchio-oto-renal syndrome
  • c.-47C>A Single submitter otofaciocervical syndrome 1
  • p.Ala53= Single submitter otofaciocervical syndrome 1

Likely benign 134

Uncertain significance 293