F9 — 648 ClinVar variants

All ClinVar germline F9 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 200 flagged for review →

179 Pathogenic · 16 Pathogenic/Likely pathogenic · 103 Likely pathogenic · 13 Conflicting · 35 Benign · 6 Benign/Likely benign · 172 Likely benign · 124 Uncertain significance

Full F9 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 200

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 56

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 5

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 60

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 79

The independent predictors disagree with each other — read with care.

All F9 variants

Pathogenic 179

Pathogenic/Likely pathogenic 16

Likely pathogenic 103

Conflicting classifications of pathogenicity 13

Benign 35

Benign/Likely benign 6

  • c.278-27A>G Multiple submitters thrombophilia, X-linked, due to factor 9 defect
  • p.Glu323Lys Multiple submitters hemophilia B
  • p.His303Tyr Multiple submitters Warfarin sensitivity, X-linked
  • p.Ser220Thr Multiple submitters Warfarin sensitivity, X-linked
  • p.Ter462= Multiple submitters Inborn genetic diseases
  • p.Val273= Multiple submitters thrombophilia, X-linked, due to factor 9 defect

Likely benign 172

  • p.Leu369= Expert panel hemophilia B
  • p.Pro44Ser Expert panel hemophilia B
  • c.520+19T>C Multiple submitters hemophilia B
  • p.Cys155= Multiple submitters hemophilia B
  • p.Gly246= Multiple submitters hemophilia B
  • p.Ser406= Multiple submitters thrombophilia, X-linked, due to factor 9 defect
  • c.252+12C>T Single submitter hemophilia B
  • c.252+14C>T Single submitter hemophilia B
  • c.252+15A>G Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.252+16T>C Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.252+18A>G Single submitter hemophilia B
  • c.252+20A>G Single submitter hemophilia B
  • c.253-12T>C Single submitter hemophilia B
  • c.253-8C>T Single submitter hemophilia B
  • c.277+14T>C Single submitter hemophilia B
  • c.277+19C>T Single submitter hemophilia B
  • c.277+7A>G Single submitter hemophilia B
  • c.278-12C>T Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.278-13A>C Single submitter hemophilia B
  • c.278-4A>G Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.391+11A>G Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.391+9C>G Single submitter hemophilia B
  • c.392-10C>T Single submitter hemophilia B
  • c.392-20_392-17del Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.392-20G>A Single submitter hemophilia B
  • c.392-7C>A Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.520+10T>C Single submitter hemophilia B
  • c.520+9C>A Single submitter hemophilia B
  • c.521-10A>G Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.521-11T>C Single submitter hemophilia B
  • c.521-12C>T Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.521-13T>C Single submitter hemophilia B
  • c.521-17T>C Single submitter hemophilia B
  • c.521-5del Single submitter hemophilia B
  • c.521-7T>C Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.723+11C>T Single submitter hemophilia B
  • c.723+14A>T Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.723+15T>C Single submitter hemophilia B
  • c.723+7T>C Single submitter hemophilia B
  • c.724-4A>G Single submitter hemophilia B
  • c.838+16G>T Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.838+17A>C Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.838+18A>G Single submitter hemophilia B
  • c.838+18del Single submitter hemophilia B
  • c.839-16A>G Single submitter hemophilia B
  • c.88+10_88+11del Single submitter hemophilia B
  • c.88+10C>G Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.88+16T>A Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.88+20A>T Single submitter hemophilia B
  • c.88+8T>C Single submitter hemophilia B
  • c.89-14C>A Single submitter thrombophilia, X-linked, due to factor 9 defect
  • c.89-15del Single submitter hemophilia B
  • c.89-19T>A Single submitter hemophilia B
  • c.89-20A>G Single submitter hemophilia B
  • c.89-7A>G Single submitter hemophilia B
  • c.89-9A>G Single submitter hemophilia B
  • c.*1048G>A Single submitter hemophilia B
  • p.Ala207= Single submitter hemophilia B
  • p.Ala233= Single submitter hemophilia B
  • p.Ala250= Single submitter hemophilia B
  • p.Ala397= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Ala9= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Arg191= Single submitter hemophilia B
  • p.Arg226= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Arg298= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Arg3= Single submitter hemophilia B
  • p.Arg358= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Arg364= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Arg373= Single submitter hemophilia B
  • p.Arg3Ser Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Arg43= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Arg449= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Asn113= Single submitter hemophilia B
  • p.Asn245= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Asn258= Single submitter hemophilia B
  • p.Asn295= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Asn343= Single submitter hemophilia B
  • p.Asn36Asp Single submitter hemophilia B
  • p.Asn5= Single submitter hemophilia B
  • p.Asn59= Single submitter hemophilia B
  • p.Asp249= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Asp315= Single submitter hemophilia B
  • p.Asp378= Single submitter hemophilia B
  • p.Asp410= Single submitter hemophilia B
  • p.Cys108= Single submitter hemophilia B
  • p.Cys128= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Cys134= Single submitter hemophilia B
  • p.Cys141= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Cys18= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Cys435= Single submitter hemophilia B
  • p.Cys64= Single submitter hemophilia B
  • p.Gln185= Single submitter hemophilia B
  • p.Glu142= Single submitter hemophilia B
  • p.Glu193= Single submitter hemophilia B
  • p.Glu323= Single submitter hemophilia B
  • p.Glu434= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Glu67= Single submitter hemophilia B
  • p.Glu98= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Gly105= Single submitter hemophilia B
  • p.Gly254= Single submitter hemophilia B
  • p.Gly280= Single submitter hemophilia B
  • p.Gly402= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Gly403= Single submitter hemophilia B
  • p.Gly427= Single submitter hemophilia B
  • p.Gly432= Single submitter hemophilia B
  • p.His267= Single submitter hemophilia B
  • p.His282Tyr Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.His302= Single submitter hemophilia B
  • p.His303= Single submitter hemophilia B
  • p.His34= Single submitter hemophilia B
  • p.Ile112= Single submitter hemophilia B
  • p.Ile316= Single submitter hemophilia B
  • p.Ile334= Single submitter hemophilia B
  • p.Ile344= Single submitter
  • p.Ile390= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Ile428= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Leu244= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Leu321= Single submitter hemophilia B
  • p.Leu376= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Leu460= Single submitter hemophilia B
  • p.Leu52= Single submitter hemophilia B
  • p.Lys152= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Lys168= Single submitter hemophilia B
  • p.Lys260= Single submitter hemophilia B
  • p.Lys293= Single submitter hemophilia B
  • p.Lys39Arg Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Lys45= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Lys455= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Lys459= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Lys89= Single submitter hemophilia B
  • p.Phe238= Single submitter hemophilia B
  • p.Phe388= Single submitter hemophilia B
  • p.Phe395= Single submitter hemophilia B
  • p.Pro101= Single submitter hemophilia B
  • p.Pro12= Single submitter hemophilia B
  • p.Pro172= Single submitter hemophilia B
  • p.Pro197Ser Single submitter hemophilia B
  • p.Pro324= Single submitter hemophilia B
  • p.Pro414= Single submitter hemophilia B
  • p.Ser114= Single submitter hemophilia B
  • p.Ser148= Single submitter hemophilia B
  • p.Ser354= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Ser411= Single submitter hemophilia B
  • p.Ser423= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Ser430= Single submitter hemophilia B
  • p.Ser448= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Thr133= Single submitter hemophilia B
  • p.Thr186= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Thr190= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Thr194= Single submitter hemophilia B
  • p.Thr205= Single submitter hemophilia B
  • p.Thr264= Single submitter hemophilia B
  • p.Thr287= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Thr342= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Thr381= Single submitter hemophilia B
  • p.Thr417= Single submitter hemophilia B
  • p.Thr84Ala Single submitter hemophilia B ⚠
  • p.Tyr161= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Tyr201= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Tyr312= Single submitter hemophilia B
  • p.Tyr330= Single submitter hemophilia B
  • p.Tyr47= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Tyr91= Single submitter hemophilia B
  • p.Val174= Single submitter hemophilia B
  • p.Val195Gly Single submitter hemophilia B
  • p.Val248= Single submitter hemophilia B
  • p.Val296= Single submitter hemophilia B
  • p.Val359= Single submitter hemophilia B
  • p.Val419= Single submitter thrombophilia, X-linked, due to factor 9 defect
  • p.Val451= Single submitter
  • p.Val77= Single submitter hemophilia B
  • c.*10G>C No assertion criteria hemophilia B

Uncertain significance 124