FGF12 — 271 ClinVar variants
All ClinVar germline FGF12 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 88 flagged for review →
2 Pathogenic/Likely pathogenic · 3 Likely pathogenic · 7 Conflicting · 51 Benign · 9 Benign/Likely benign · 103 Likely benign · 96 Uncertain significance
Full FGF12 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 88
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 5
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
FGF12 p.Ala55Val
Conflicting
Single submitter
Inborn genetic diseases
-
FGF12 p.His135Tyr
Conflicting
Single submitter
Inborn genetic diseases
-
FGF12 p.Ile141Val
Conflicting
Single submitter
Inborn genetic diseases
-
FGF12 p.Thr30Ala
Conflicting
Single submitter
developmental and epileptic encephalopathy, 47
- FGF12 p.Tyr72His Conflicting Single submitter
Predictors lean, ClinVar uncertain 59
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
FGF12 c.14-47520A>G
Uncertain significance
Multiple submitters
FGF12-related disorder
- FGF12 c.14-47655C>T Uncertain significance Multiple submitters
-
FGF12 p.Arg14Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FGF12 p.Arg160Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
- FGF12 p.Arg160His Uncertain significance Multiple submitters
-
FGF12 p.Asp28Val
Uncertain significance
Multiple submitters
developmental and epileptic encephalopathy, 47
- FGF12 p.Glu37Lys Uncertain significance Multiple submitters
-
FGF12 p.Pro138Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FGF12 p.Thr100Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
- FGF12 p.Val78Leu Uncertain significance Multiple submitters
- FGF12 c.14-47501T>C Uncertain significance Single submitter
- FGF12 c.14-47544G>T Uncertain significance Single submitter
- FGF12 c.14-47573G>A Uncertain significance Single submitter
- FGF12 c.14-47577G>A Uncertain significance Single submitter
- FGF12 c.14-47616G>A Uncertain significance Single submitter
- FGF12 c.14-47616G>T Uncertain significance Single submitter
- FGF12 c.14-47618G>A Uncertain significance Single submitter
- FGF12 c.14-47622G>A Uncertain significance Single submitter
- FGF12 c.14-47624G>A Uncertain significance Single submitter
- FGF12 c.14-47627A>C Uncertain significance Single submitter
-
FGF12 c.14-47649A>G
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 47
- FGF12 c.14-47654G>C Uncertain significance Single submitter
- FGF12 p.Arg103Cys Uncertain significance Single submitter
- FGF12 p.Arg109Gln Uncertain significance Single submitter
- FGF12 p.Arg126Ser Uncertain significance Single submitter
- FGF12 p.Arg52Cys Uncertain significance Single submitter
- FGF12 p.Asn116Ser Uncertain significance Single submitter
- FGF12 p.Asn45Lys Uncertain significance Single submitter
-
FGF12 p.Asp40His
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 47
- FGF12 p.Asp77Glu Uncertain significance Single submitter
- FGF12 p.Cys144Phe Uncertain significance Single submitter
-
FGF12 p.Glu153Lys
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 47
- FGF12 p.Gly108Arg Uncertain significance Single submitter
- FGF12 p.Gly124Ala Uncertain significance Single submitter
- FGF12 p.Gly29Ala Uncertain significance Single submitter
- FGF12 p.Gly29Asp Uncertain significance Single submitter
-
FGF12 p.Gly71Ser
Uncertain significance
Single submitter
FGF12-related disorder
- FGF12 p.His152Pro Uncertain significance Single submitter
- FGF12 p.Leu73Pro Uncertain significance Single submitter
- FGF12 p.Met122Thr Uncertain significance Single submitter
- FGF12 p.Phe22Val Uncertain significance Single submitter
- FGF12 p.Pro140Arg Uncertain significance Single submitter
-
FGF12 p.Pro48Ser
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 47
- FGF12 p.Ser107Leu Uncertain significance Single submitter
-
FGF12 p.Ser164Asn
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 47
- FGF12 p.Ser62Gly Uncertain significance Single submitter
- FGF12 p.Thr169Ile Uncertain significance Single submitter
- FGF12 p.Thr181Ala Uncertain significance Single submitter
- FGF12 p.Thr34Ser Uncertain significance Single submitter
- FGF12 p.Tyr102Cys Uncertain significance Single submitter
- FGF12 p.Tyr74Cys Uncertain significance Single submitter
- FGF12 p.Tyr74His Uncertain significance Single submitter
-
FGF12 p.Tyr94Cys
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 47
-
FGF12 p.Val137Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
FGF12 p.Val49Leu
Uncertain significance
Single submitter
developmental and epileptic encephalopathy, 47
- FGF12 p.Val54Leu Uncertain significance Single submitter
- FGF12 p.Val78Ile Uncertain significance Single submitter
-
FGF12 p.Val95Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
FGF12 p.Val59Gly
Uncertain significance
No assertion criteria
FGF12-related disorder
Predictors split 24
The independent predictors disagree with each other — read with care.
-
FGF12 c.14-47513G>T
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FGF12 c.14-47547G>C
Likely benign
Multiple submitters
developmental and epileptic encephalopathy, 47
-
FGF12 c.14-47558G>C
Uncertain significance
Multiple submitters
Inborn genetic diseases
- FGF12 c.14-47513G>C Uncertain significance Single submitter
- FGF12 c.14-47514C>T Uncertain significance Single submitter
- FGF12 c.14-47528G>C Likely benign Single submitter
- FGF12 c.14-47547G>A Uncertain significance Single submitter
- FGF12 c.14-47583A>G Uncertain significance Single submitter
- FGF12 c.14-47591G>A Likely benign Single submitter
- FGF12 c.14-47598C>T Uncertain significance Single submitter
- FGF12 c.14-47601C>T Benign Single submitter
-
FGF12 p.Ala55Thr
Conflicting
Single submitter
Inborn genetic diseases
- FGF12 p.Arg103His Uncertain significance Single submitter
- FGF12 p.Asn171Lys Uncertain significance Single submitter
- FGF12 p.Asn38Tyr Benign Single submitter
- FGF12 p.Asp32Gly Benign Single submitter
-
FGF12 p.Gly114Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
FGF12 p.Gly20Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- FGF12 p.His152Tyr Likely benign Single submitter
- FGF12 p.His26Tyr Uncertain significance Single submitter
- FGF12 p.Thr167Lys Uncertain significance Single submitter
- FGF12 p.Tyr72Cys Benign Single submitter
- FGF12 p.Tyr93His Uncertain significance Single submitter
- FGF12 p.Val53Ile Uncertain significance Single submitter
All FGF12 variants
Pathogenic/Likely pathogenic 2
- p.Arg52His Multiple submitters developmental and epileptic encephalopathy, 47
- p.Gly50Ser Multiple submitters FGF12-related disorders
Likely pathogenic 3
- c.14-47517G>C Single submitter
- p.Gly114Glu Single submitter developmental and epileptic encephalopathy, 47
- p.His152fs Single submitter
Conflicting classifications of pathogenicity 7
- p.Ala55Thr Single submitter Inborn genetic diseases ⚠
- p.Ala55Val Single submitter Inborn genetic diseases ⚠
- p.Asn45Ser Single submitter Inborn genetic diseases
- p.His135Tyr Single submitter Inborn genetic diseases ⚠
- p.Ile141Val Single submitter Inborn genetic diseases ⚠
- p.Thr30Ala Single submitter developmental and epileptic encephalopathy, 47 ⚠
- p.Tyr72His Single submitter ⚠
Benign 51
- c.125-143G>A Multiple submitters
- c.125-21C>T Multiple submitters developmental and epileptic encephalopathy, 47
- c.13+228C>G Multiple submitters
- c.13+65C>A Multiple submitters
- c.13+71G>T Multiple submitters
- c.14-47441T>C Multiple submitters
- c.14-48195G>A Multiple submitters
- c.14-48333T>C Multiple submitters
- c.14-48430C>A Multiple submitters
- c.14-48492T>C Multiple submitters
- c.228+35G>A Multiple submitters
- c.228+96T>C Multiple submitters
- c.229-7C>T Multiple submitters developmental and epileptic encephalopathy, 47
- c.229-8del Multiple submitters
- c.229-9_229-8del Multiple submitters
- c.229-92G>A Multiple submitters
- c.427+77C>T Multiple submitters
- c.*277T>C Multiple submitters
- c.125-3del Single submitter
- c.125-3dup Single submitter
- c.14-47186_14-47185insC Single submitter
- c.14-47563C>T Single submitter
- c.14-47601C>T Single submitter ⚠
- c.14-47624G>C Single submitter
- c.14-48660C>A Single submitter
- c.14-49179T>C Single submitter
- c.229-125T>C Single submitter
- c.229-184C>A Single submitter
- c.229-239G>C Single submitter
- c.229-277G>A Single submitter
- c.427+124G>C Single submitter
- c.427+165T>C Single submitter
- c.427+173del Single submitter
- c.427+182G>A Single submitter
- c.427+217A>G Single submitter
- c.427+249C>G Single submitter
- c.427+272C>T Single submitter
- c.428-275del Single submitter
- c.428-284C>G Single submitter
- c.-131+3_-131+4dup Single submitter
- c.-131+3dup Single submitter
- p.Asn38Tyr Single submitter ⚠
- p.Asp32Gly Single submitter ⚠
- p.Asp40Asn Single submitter
- p.Gly155Arg Single submitter
- p.Gly159Arg Single submitter
- p.Ile154Val Single submitter
- p.Leu63Phe Single submitter
- p.Leu8Arg Single submitter
- p.Tyr72Cys Single submitter ⚠
- p.Val54= Single submitter
Benign/Likely benign 9
- c.14-47623C>T Multiple submitters
- c.229-10_229-8del Multiple submitters
- c.229-10T>C Multiple submitters
- c.229-6del Multiple submitters
- c.229-8dup Multiple submitters developmental and epileptic encephalopathy, 47
- c.229-9T>C Multiple submitters
- p.Ile31Thr Multiple submitters Inborn genetic diseases
- p.Ser76= Multiple submitters
- p.Val143= Multiple submitters
Likely benign 103
- c.125-5C>T Multiple submitters
- c.14-47547G>C Multiple submitters developmental and epileptic encephalopathy, 47 ⚠
- c.14-47644G>A Multiple submitters
- c.14-47677G>A Multiple submitters
- p.Ser150= Multiple submitters
- p.Tyr102= Multiple submitters
- c.124+11_124+12insA Single submitter
- c.124+14G>A Single submitter
- c.124+15C>G Single submitter
- c.124+235A>G Single submitter
- c.124+9C>A Single submitter
- c.125-11T>G Single submitter
- c.125-13T>C Single submitter
- c.125-14T>C Single submitter
- c.125-16C>T Single submitter
- c.125-19C>T Single submitter
- c.125-20C>T Single submitter
- c.125-218A>G Single submitter
- c.125-246A>G Single submitter
- c.125-312A>G Single submitter
- c.125-4C>T Single submitter
- c.125-5C>G Single submitter
- c.125-7_125-6insT Single submitter
- c.13+17A>G Single submitter
- c.14-15T>G Single submitter
- c.14-17A>G Single submitter
- c.14-47467G>A Single submitter
- c.14-47469G>A Single submitter
- c.14-47469G>C Single submitter
- c.14-47472G>A Single submitter
- c.14-47473C>T Single submitter
- c.14-47476G>T Single submitter
- c.14-47494G>A Single submitter
- c.14-47503G>A Single submitter
- c.14-47503G>T Single submitter
- c.14-47528G>C Single submitter ⚠
- c.14-47533A>G Single submitter
- c.14-47539C>T Single submitter
- c.14-47554C>T Single submitter
- c.14-47578C>T Single submitter
- c.14-47579A>T Single submitter
- c.14-47591G>A Single submitter ⚠
- c.14-47599C>T Single submitter
- c.14-47612C>T Single submitter
- c.14-47614G>A Single submitter
- c.14-47619C>A Single submitter
- c.14-47625A>T Single submitter
- c.14-47638G>A Single submitter
- c.14-47662C>T Single submitter
- c.14-47668C>G Single submitter
- c.14-47680T>A Single submitter
- c.14-47814C>T Single submitter
- c.14-47938G>C Single submitter
- c.14-5T>C Single submitter
- c.14-8T>C Single submitter
- c.228+12G>A Single submitter
- c.228+18T>C Single submitter
- c.228+19G>A Single submitter
- c.228+208T>C Single submitter
- c.228+8C>T Single submitter
- c.229-20_229-19insGTC Single submitter
- c.229-21_229-19del Single submitter
- c.229-273C>T Single submitter
- c.229-9_229-8insC Single submitter
- c.427+143A>G Single submitter
- c.427+16_427+19del Single submitter
- c.427+19G>A Single submitter
- c.428-17G>A Single submitter
- c.428-17G>T Single submitter
- c.-131+19_-131+21dup Single submitter
- c.-14C>T Single submitter
- c.-165G>A Single submitter
- c.-3G>A Single submitter
- p.Ala66Val Single submitter
- p.Asp36= Single submitter
- p.Gln158= Single submitter
- p.Gln19= Single submitter
- p.Glu37= Single submitter
- p.Glu82= Single submitter
- p.Gly159= Single submitter
- p.Gly50= Single submitter
- p.Gly71= Single submitter
- p.His152Tyr Single submitter ⚠
- p.His26= Single submitter
- p.Ile141Thr Single submitter
- p.Leu101= Single submitter
- p.Leu43= Single submitter
- p.Leu43Phe Single submitter
- p.Lys128= Single submitter
- p.Pro138= Single submitter
- p.Pro48= Single submitter
- p.Pro48Leu Single submitter
- p.Pro6= Single submitter
- p.Ser107= Single submitter
- p.Ser150Leu Single submitter
- p.Ser39= Single submitter
- p.Ser62= Single submitter
- p.Thr13= Single submitter
- p.Thr30Asn Single submitter
- p.Tyr93= Single submitter
- p.Val49= Single submitter
- p.Val49Met Single submitter
- p.Val53= Single submitter
Uncertain significance 96
- c.125-3C>G Multiple submitters developmental and epileptic encephalopathy, 47
- c.14-47513G>T Multiple submitters Inborn genetic diseases ⚠
- c.14-47520A>G Multiple submitters FGF12-related disorder ⚠
- c.14-47558G>C Multiple submitters Inborn genetic diseases ⚠
- c.14-47562G>A Multiple submitters developmental and epileptic encephalopathy, 47
- c.14-47655C>T Multiple submitters ⚠
- p.Arg109Ter Multiple submitters
- p.Arg14Ser Multiple submitters Inborn genetic diseases ⚠
- p.Arg160Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg160His Multiple submitters ⚠
- p.Asn171Asp Multiple submitters
- p.Asp28Glu Multiple submitters
- p.Asp28Val Multiple submitters developmental and epileptic encephalopathy, 47 ⚠
- p.Glu37Lys Multiple submitters ⚠
- p.Pro138Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ser180Ter Multiple submitters
- p.Thr100Ile Multiple submitters Inborn genetic diseases ⚠
- p.Val78Leu Multiple submitters ⚠
- c.124+10A>G Single submitter
- c.124+1G>T Single submitter
- c.125-3181A>G Single submitter developmental and epileptic encephalopathy, 47
- c.14-47484C>A Single submitter
- c.14-47484C>T Single submitter
- c.14-47501T>C Single submitter ⚠
- c.14-47513G>C Single submitter ⚠
- c.14-47514C>T Single submitter ⚠
- c.14-47517G>T Single submitter
- c.14-47522del Single submitter
- c.14-47544G>T Single submitter ⚠
- c.14-47547G>A Single submitter ⚠
- c.14-47573G>A Single submitter ⚠
- c.14-47577G>A Single submitter ⚠
- c.14-47583A>G Single submitter ⚠
- c.14-47598C>T Single submitter ⚠
- c.14-47616G>A Single submitter ⚠
- c.14-47616G>T Single submitter ⚠
- c.14-47618G>A Single submitter ⚠
- c.14-47622G>A Single submitter ⚠
- c.14-47624G>A Single submitter ⚠
- c.14-47627A>C Single submitter ⚠
- c.14-47649A>G Single submitter developmental and epileptic encephalopathy, 47 ⚠
- c.14-47654G>C Single submitter ⚠
- c.228+4A>G Single submitter
- p.Arg103Cys Single submitter ⚠
- p.Arg103His Single submitter ⚠
- p.Arg109Gln Single submitter ⚠
- p.Arg126Ser Single submitter ⚠
- p.Arg162Trp Single submitter
- p.Arg52Cys Single submitter ⚠
- p.Asn116Ser Single submitter ⚠
- p.Asn125fs Single submitter
- p.Asn171Lys Single submitter ⚠
- p.Asn45Lys Single submitter ⚠
- p.Asp40His Single submitter developmental and epileptic encephalopathy, 47 ⚠
- p.Asp77Glu Single submitter ⚠
- p.Asp77Val Single submitter
- p.Cys144Phe Single submitter ⚠
- p.Glu142= Single submitter
- p.Glu153Lys Single submitter developmental and epileptic encephalopathy, 47 ⚠
- p.Glu156Lys Single submitter Inborn genetic diseases
- p.Gly108Arg Single submitter ⚠
- p.Gly114Ala Single submitter Inborn genetic diseases ⚠
- p.Gly124Ala Single submitter ⚠
- p.Gly172Val Single submitter
- p.Gly20Glu Single submitter Inborn genetic diseases ⚠
- p.Gly29Ala Single submitter ⚠
- p.Gly29Asp Single submitter ⚠
- p.Gly71Ser Single submitter FGF12-related disorder ⚠
- p.His152Pro Single submitter ⚠
- p.His26Tyr Single submitter ⚠
- p.Leu46_Ile47insTer Single submitter
- p.Leu73Pro Single submitter ⚠
- p.Met122Thr Single submitter ⚠
- p.Phe22Val Single submitter ⚠
- p.Pro140Arg Single submitter ⚠
- p.Pro48Ser Single submitter developmental and epileptic encephalopathy, 47 ⚠
- p.Ser107Leu Single submitter ⚠
- p.Ser164Asn Single submitter developmental and epileptic encephalopathy, 47 ⚠
- p.Ser62fs Single submitter
- p.Ser62Gly Single submitter ⚠
- p.Thr167Lys Single submitter ⚠
- p.Thr169Ile Single submitter ⚠
- p.Thr181Ala Single submitter ⚠
- p.Thr34Ser Single submitter ⚠
- p.Tyr102Cys Single submitter ⚠
- p.Tyr74Cys Single submitter ⚠
- p.Tyr74His Single submitter ⚠
- p.Tyr93His Single submitter ⚠
- p.Tyr94Cys Single submitter developmental and epileptic encephalopathy, 47 ⚠
- p.Val137Leu Single submitter Inborn genetic diseases ⚠
- p.Val49Leu Single submitter developmental and epileptic encephalopathy, 47 ⚠
- p.Val53Ile Single submitter ⚠
- p.Val54Leu Single submitter ⚠
- p.Val78Ile Single submitter ⚠
- p.Val95Met Single submitter Inborn genetic diseases ⚠
- p.Val59Gly No assertion criteria FGF12-related disorder ⚠