FLI1 — 293 ClinVar variants
All ClinVar germline FLI1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 110 flagged for review →
4 Pathogenic · 1 Pathogenic/Likely pathogenic · 7 Likely pathogenic · 6 Conflicting · 40 Benign · 6 Benign/Likely benign · 110 Likely benign · 119 Uncertain significance
Full FLI1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 110
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 5
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
FLI1 p.Ala25Val
Conflicting
Single submitter
bleeding disorder, platelet-type, 21
-
FLI1 p.Arg337Gln
Conflicting
Single submitter
Jacobsen syndrome
-
FLI1 p.Arg340His
Conflicting
Single submitter
Bleeding and platelet disorders
-
FLI1 p.Thr156Ile
Conflicting
Single submitter
Inborn genetic diseases
-
FLI1 p.Tyr343Cys
Conflicting
Single submitter
bleeding disorder, platelet-type, 21
Predictors lean, ClinVar uncertain 88
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
FLI1 p.Ala178Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Ala247Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Ala295Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Ala419Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Arg177Pro
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Arg257Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Asn435Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Asp155Asn
Uncertain significance
Multiple submitters
bleeding disorder, platelet-type, 21
-
FLI1 p.Gly24Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
- FLI1 p.Ile48Phe Uncertain significance Multiple submitters
-
FLI1 p.Lys31Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Pro268Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Pro80Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Ser221Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Val444Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Val85Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
- FLI1 p.Ala178Ser Uncertain significance Single submitter
-
FLI1 p.Ala201Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Ala22Val Uncertain significance Single submitter
-
FLI1 p.Ala26Val
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Ala297Thr Uncertain significance Single submitter
- FLI1 p.Ala393Val Uncertain significance Single submitter
- FLI1 p.Arg122Lys Uncertain significance Single submitter
- FLI1 p.Arg213Gln Uncertain significance Single submitter
- FLI1 p.Arg257Trp Uncertain significance Single submitter
-
FLI1 p.Arg272His
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Arg324Gln Uncertain significance Single submitter
- FLI1 p.Arg438His Uncertain significance Single submitter
- FLI1 p.Asn120Tyr Uncertain significance Single submitter
- FLI1 p.Asn161Asp Uncertain significance Single submitter
- FLI1 p.Asn203Ser Uncertain significance Single submitter
- FLI1 p.Asp107Glu Uncertain significance Single submitter
-
FLI1 p.Asp14Asn
Uncertain significance
Single submitter
bleeding disorder, platelet-type, 21
- FLI1 p.Asp15Asn Uncertain significance Single submitter
- FLI1 p.Asp174Asn Uncertain significance Single submitter
- FLI1 p.Asp33Asn Uncertain significance Single submitter
- FLI1 p.Gln160His Uncertain significance Single submitter
- FLI1 p.Glu136Gln Uncertain significance Single submitter
- FLI1 p.Glu218Val Uncertain significance Single submitter
- FLI1 p.Glu255Gln Uncertain significance Single submitter
-
FLI1 p.Glu375Lys
Uncertain significance
Single submitter
FLI1-related disorder
- FLI1 p.Glu78Gln Uncertain significance Single submitter
-
FLI1 p.Glu78Val
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Glu96Lys Uncertain significance Single submitter
- FLI1 p.Gly279Arg Uncertain significance Single submitter
- FLI1 p.Gly364Ser Uncertain significance Single submitter
- FLI1 p.Gly38Glu Uncertain significance Single submitter
- FLI1 p.Gly429Glu Uncertain significance Single submitter
- FLI1 p.Gly94Arg Uncertain significance Single submitter
-
FLI1 p.Gly94Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.His190Gln Uncertain significance Single submitter
- FLI1 p.Leu176Ile Uncertain significance Single submitter
- FLI1 p.Leu29Ile Uncertain significance Single submitter
- FLI1 p.Leu339Phe Uncertain significance Single submitter
- FLI1 p.Leu51Pro Uncertain significance Single submitter
- FLI1 p.Leu91Pro Uncertain significance Single submitter
- FLI1 p.Lys240Arg Uncertain significance Single submitter
- FLI1 p.Lys350Asn Uncertain significance Single submitter
- FLI1 p.Lys47Arg Uncertain significance Single submitter
-
FLI1 p.Lys67Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
FLI1 p.Met162Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Met378Ile Uncertain significance Single submitter
- FLI1 p.Met378Val Uncertain significance Single submitter
- FLI1 p.Pro112Leu Uncertain significance Single submitter
- FLI1 p.Pro112Thr Uncertain significance Single submitter
- FLI1 p.Pro262Gln Uncertain significance Single submitter
- FLI1 p.Pro426Ser Uncertain significance Single submitter
-
FLI1 p.Pro50Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Ser21Leu Uncertain significance Single submitter
- FLI1 p.Ser224Pro Uncertain significance Single submitter
- FLI1 p.Ser251Gly Uncertain significance Single submitter
- FLI1 p.Ser278Arg Uncertain significance Single submitter
- FLI1 p.Ser37Leu Uncertain significance Single submitter
- FLI1 p.Ser386Thr Uncertain significance Single submitter
- FLI1 p.Ser76Tyr Uncertain significance Single submitter
-
FLI1 p.Ser97Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Thr119Pro Uncertain significance Single submitter
-
FLI1 p.Thr208Pro
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Thr411Asn Uncertain significance Single submitter
- FLI1 p.Thr411Ser Uncertain significance Single submitter
- FLI1 p.Thr427Met Uncertain significance Single submitter
- FLI1 p.Trp141Arg Uncertain significance Single submitter
-
FLI1 p.Trp284Arg
Uncertain significance
Single submitter
bleeding disorder, platelet-type, 21
-
FLI1 p.Tyr105Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
FLI1 p.Tyr149Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Tyr23Phe Uncertain significance Single submitter
- FLI1 p.Val186Glu Uncertain significance Single submitter
-
FLI1 p.Val444Gly
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 17
The independent predictors disagree with each other — read with care.
-
FLI1 p.Arg177His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Phe159Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Pro80Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
FLI1 p.Thr184Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
- FLI1 p.Val126Ile Uncertain significance Multiple submitters
- FLI1 p.Arg177Cys Uncertain significance Single submitter
-
FLI1 p.Asp223His
Uncertain significance
Single submitter
Inborn genetic diseases
- FLI1 p.Glu108Lys Uncertain significance Single submitter
- FLI1 p.Glu375Gln Uncertain significance Single submitter
- FLI1 p.Gly3Arg Uncertain significance Single submitter
- FLI1 p.Met170Ile Uncertain significance Single submitter
- FLI1 p.Pro382Leu Uncertain significance Single submitter
- FLI1 p.Ser79Pro Uncertain significance Single submitter
- FLI1 p.Ser84Arg Uncertain significance Single submitter
- FLI1 p.Trp423Arg Uncertain significance Single submitter
- FLI1 p.Tyr379Cys Uncertain significance Single submitter
-
FLI1 p.Ser271Asn
Uncertain significance
No assertion criteria
bleeding disorder, platelet-type, 21
All FLI1 variants
Pathogenic 4
- p.Arg324Trp Single submitter Bleeding disorder platelet type macrothrombocytopenia
- p.Gln282Ter Single submitter bleeding disorder, platelet-type, 21
- p.Pro114fs Single submitter
- p.Lys345Glu No assertion criteria bleeding disorder, platelet-type, 21
Pathogenic/Likely pathogenic 1
- p.Asn331fs No assertion criteria Abnormal bleeding
Likely pathogenic 7
- p.Ala338fs Single submitter Bleeding and platelet disorders
- p.Arg324fs Single submitter
- p.Arg337Trp Single submitter bleeding disorder, platelet-type, 21
- p.Lys354fs Single submitter Bleeding and platelet disorders
- p.Pro113fs Single submitter FLI1-related disorder
- p.Arg340Pro No assertion criteria bleeding disorder, platelet-type, 21
- p.Glu316Ter No assertion criteria bleeding disorder, platelet-type, 21
Conflicting classifications of pathogenicity 6
- p.Ala25Val Single submitter bleeding disorder, platelet-type, 21 ⚠
- p.Arg337Gln Single submitter Jacobsen syndrome ⚠
- p.Arg340His Single submitter Bleeding and platelet disorders ⚠
- p.Arg68Leu Single submitter bleeding disorder, platelet-type, 21
- p.Thr156Ile Single submitter Inborn genetic diseases ⚠
- p.Tyr343Cys Single submitter bleeding disorder, platelet-type, 21 ⚠
Benign 40
- c.231-3253C>T Multiple submitters
- c.385+261A>T Multiple submitters
- c.589+99C>T Multiple submitters
- c.655+94G>T Multiple submitters
- c.721+75C>T Multiple submitters
- c.722-162A>G Multiple submitters
- c.722-207G>T Multiple submitters
- c.722-95C>T Multiple submitters
- c.829+112G>C Multiple submitters
- c.18+205del Single submitter
- c.18+226del Single submitter
- c.18+239del Single submitter
- c.18+247del Single submitter
- c.18+270del Single submitter
- c.18+306del Single submitter
- c.18+311A>G Single submitter
- c.18+316A>C Single submitter
- c.19-284T>A Single submitter
- c.230+202C>A Single submitter
- c.230+202C>G Single submitter
- c.230+249C>T Single submitter
- c.231-112C>A Single submitter
- c.231-141A>G Single submitter
- c.231-214C>T Single submitter
- c.231-277G>A Single submitter
- c.231-305del Single submitter
- c.231-3788C>A Single submitter
- c.386-289C>T Single submitter
- c.655+135_655+136insG Single submitter
- c.655+220T>G Single submitter
- c.782-47A>G Single submitter
- c.829+302G>A Single submitter
- c.830-201C>T Single submitter
- c.-203+7188del Single submitter
- c.-203+7241GA[17] Single submitter
- c.-203+7241GA[21] Single submitter
- c.-203+7241GA[22] Single submitter
- c.-203+7241GA[23] Single submitter
- c.-203+7241GA[24] Single submitter
- p.Thr131= Single submitter
Benign/Likely benign 6
Likely benign 110
- c.18+18G>A Multiple submitters
- c.18+18G>T Multiple submitters
- c.385+16G>A Multiple submitters
- c.386-16G>A Multiple submitters
- c.386-20C>T Multiple submitters
- c.386-7T>A Multiple submitters
- c.589+9C>T Multiple submitters
- c.721+11G>A Multiple submitters
- c.830-20G>A Multiple submitters
- c.830-7C>T Multiple submitters
- p.Ala178= Multiple submitters
- p.Ala25= Multiple submitters
- p.Ala393Thr Multiple submitters
- p.Arg177= Multiple submitters
- p.Asn120= Multiple submitters
- p.Asn296= Multiple submitters
- p.Glu218= Multiple submitters
- p.Pro373= Multiple submitters
- p.Pro80= Multiple submitters
- p.Ser10= Multiple submitters
- p.Ser278= Multiple submitters
- p.Thr374= Multiple submitters
- p.Thr442= Multiple submitters
- p.Tyr23= Multiple submitters
- p.Tyr42= Multiple submitters Inborn genetic diseases
- c.18+10G>A Single submitter
- c.18+8G>A Single submitter
- c.19-4del Single submitter
- c.19-4G>T Single submitter
- c.230+8C>T Single submitter
- c.231-3308C>T Single submitter
- c.231-3348G>A Single submitter
- c.385+7C>T Single submitter
- c.385+8G>A Single submitter
- c.386-17C>T Single submitter
- c.386-9C>T Single submitter
- c.589+10G>A Single submitter
- c.589+20C>A Single submitter
- c.655+11T>C Single submitter
- c.655+8T>G Single submitter
- c.655+9G>T Single submitter
- c.656-15G>C Single submitter
- c.722-13C>G Single submitter
- c.722-4A>C Single submitter
- c.782-4T>G Single submitter
- c.830-10C>T Single submitter
- c.830-15C>A Single submitter
- c.830-15C>T Single submitter
- c.830-6G>A Single submitter
- c.830-7= Single submitter
- p.Ala145= Single submitter
- p.Ala22= Single submitter
- p.Ala32= Single submitter
- p.Ala338= Single submitter
- p.Ala419= Single submitter
- p.Arg139= Single submitter
- p.Asn103= Single submitter
- p.Asn161= Single submitter
- p.Asn171Ser Single submitter
- p.Asn183= Single submitter
- p.Asn239= Single submitter
- p.Asn253= Single submitter
- p.Asn306= Single submitter
- p.Asn329= Single submitter
- p.Asp107= Single submitter
- p.Asp219= Single submitter
- p.Asp33= Single submitter
- p.Gln16= Single submitter
- p.Gln248= Single submitter
- p.Glu108= Single submitter
- p.Glu166= Single submitter
- p.Gly111= Single submitter
- p.Gly267= Single submitter
- p.Gly322= Single submitter
- p.Gly95= Single submitter
- p.His363= Single submitter
- p.His447= Single submitter
- p.Ile154= Single submitter
- p.Leu151= Single submitter
- p.Leu18= Single submitter
- p.Leu266= Single submitter
- p.Leu290= Single submitter
- p.Lys169= Single submitter
- p.Pro127= Single submitter
- p.Pro268= Single submitter
- p.Pro437= Single submitter
- p.Pro50= Single submitter
- p.Pro52= Single submitter
- p.Pro53= Single submitter
- p.Ser198= Single submitter
- p.Ser21= Single submitter
- p.Ser212= Single submitter
- p.Ser292= Single submitter
- p.Ser376= Single submitter
- p.Ser412= Single submitter
- p.Ser84= Single submitter
- p.Thr179= Single submitter
- p.Thr184= Single submitter
- p.Thr249= Single submitter
- p.Thr312= Single submitter
- p.Thr35= Single submitter
- p.Thr4= Single submitter
- p.Tyr332= Single submitter
- p.Tyr356= Single submitter
- p.Val317= Single submitter
- p.Val444= Single submitter
- p.Asn275= No assertion criteria FLI1-related disorder
- p.Glu96= No assertion criteria FLI1-related disorder
- p.Ile300= No assertion criteria FLI1-related disorder
- p.Val12= No assertion criteria FLI1-related disorder
Uncertain significance 119
- p.Ala178Thr Multiple submitters Inborn genetic diseases ⚠
- p.Ala247Thr Multiple submitters Inborn genetic diseases ⚠
- p.Ala295Ser Multiple submitters Inborn genetic diseases ⚠
- p.Ala419Thr Multiple submitters Inborn genetic diseases ⚠
- p.Arg177His Multiple submitters Inborn genetic diseases ⚠
- p.Arg177Pro Multiple submitters Inborn genetic diseases ⚠
- p.Arg257Gln Multiple submitters Inborn genetic diseases ⚠
- p.Asn435Ser Multiple submitters Inborn genetic diseases ⚠
- p.Asp155Asn Multiple submitters bleeding disorder, platelet-type, 21 ⚠
- p.Gly24Arg Multiple submitters Inborn genetic diseases ⚠
- p.Ile48Phe Multiple submitters ⚠
- p.Lys31Arg Multiple submitters Inborn genetic diseases ⚠
- p.Phe159Leu Multiple submitters Inborn genetic diseases ⚠
- p.Pro268Leu Multiple submitters Inborn genetic diseases ⚠
- p.Pro80Gln Multiple submitters Inborn genetic diseases ⚠
- p.Pro80Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ser221Phe Multiple submitters Inborn genetic diseases ⚠
- p.Thr184Met Multiple submitters Inborn genetic diseases ⚠
- p.Val126Ile Multiple submitters ⚠
- p.Val444Met Multiple submitters Inborn genetic diseases ⚠
- p.Val85Ile Multiple submitters Inborn genetic diseases ⚠
- c.230+2T>C Single submitter
- c.231-3509G>T Single submitter
- c.231-6C>T Single submitter
- c.385+3A>G Single submitter
- c.655+1G>T Single submitter
- c.722-1G>A Single submitter
- p.Ala178Ser Single submitter ⚠
- p.Ala201Thr Single submitter Inborn genetic diseases ⚠
- p.Ala22Val Single submitter ⚠
- p.Ala26Val Single submitter Inborn genetic diseases ⚠
- p.Ala297Thr Single submitter ⚠
- p.Ala393Val Single submitter ⚠
- p.Arg122Lys Single submitter ⚠
- p.Arg177Cys Single submitter ⚠
- p.Arg213Gln Single submitter ⚠
- p.Arg257Trp Single submitter ⚠
- p.Arg272His Single submitter Inborn genetic diseases ⚠
- p.Arg324Gln Single submitter ⚠
- p.Arg438His Single submitter ⚠
- p.Asn120Tyr Single submitter ⚠
- p.Asn161Asp Single submitter ⚠
- p.Asn203Ser Single submitter ⚠
- p.Asp107Glu Single submitter ⚠
- p.Asp14Asn Single submitter bleeding disorder, platelet-type, 21 ⚠
- p.Asp15Asn Single submitter ⚠
- p.Asp174Asn Single submitter ⚠
- p.Asp223His Single submitter Inborn genetic diseases ⚠
- p.Asp33Asn Single submitter ⚠
- p.Gln160His Single submitter ⚠
- p.Glu108Lys Single submitter ⚠
- p.Glu136Gln Single submitter ⚠
- p.Glu218Val Single submitter ⚠
- p.Glu255Gln Single submitter ⚠
- p.Glu375Gln Single submitter ⚠
- p.Glu375Lys Single submitter FLI1-related disorder ⚠
- p.Glu78Gln Single submitter ⚠
- p.Glu78Val Single submitter Inborn genetic diseases ⚠
- p.Glu96Lys Single submitter ⚠
- p.Gly279Arg Single submitter ⚠
- p.Gly364Ser Single submitter ⚠
- p.Gly38Glu Single submitter ⚠
- p.Gly3Arg Single submitter ⚠
- p.Gly429Glu Single submitter ⚠
- p.Gly449Val Single submitter
- p.Gly94Arg Single submitter ⚠
- p.Gly94Glu Single submitter Inborn genetic diseases ⚠
- p.His190Gln Single submitter ⚠
- p.His443Gln Single submitter Inborn genetic diseases
- p.Ile5_Lys6insTer Single submitter
- p.Leu176Ile Single submitter ⚠
- p.Leu29Ile Single submitter ⚠
- p.Leu339Phe Single submitter ⚠
- p.Leu51Pro Single submitter ⚠
- p.Leu91Pro Single submitter ⚠
- p.Lys240Arg Single submitter ⚠
- p.Lys350Asn Single submitter ⚠
- p.Lys47Arg Single submitter ⚠
- p.Lys67Thr Single submitter Inborn genetic diseases ⚠
- p.Met162Thr Single submitter Inborn genetic diseases ⚠
- p.Met170Ile Single submitter ⚠
- p.Met1Arg Single submitter
- p.Met378Ile Single submitter ⚠
- p.Met378Val Single submitter ⚠
- p.Phe159Tyr Single submitter
- p.Phe360fs Single submitter
- p.Pro112Leu Single submitter ⚠
- p.Pro112Thr Single submitter ⚠
- p.Pro262Gln Single submitter ⚠
- p.Pro373Leu Single submitter
- p.Pro382Leu Single submitter ⚠
- p.Pro426Ser Single submitter ⚠
- p.Pro50Leu Single submitter Inborn genetic diseases ⚠
- p.Ser21Leu Single submitter ⚠
- p.Ser224Pro Single submitter ⚠
- p.Ser251Gly Single submitter ⚠
- p.Ser278Arg Single submitter ⚠
- p.Ser37Leu Single submitter ⚠
- p.Ser386Thr Single submitter ⚠
- p.Ser76Tyr Single submitter ⚠
- p.Ser79Pro Single submitter ⚠
- p.Ser84Arg Single submitter ⚠
- p.Ser97Cys Single submitter Inborn genetic diseases ⚠
- p.Thr119Pro Single submitter ⚠
- p.Thr208Pro Single submitter Inborn genetic diseases ⚠
- p.Thr411Asn Single submitter ⚠
- p.Thr411Ser Single submitter ⚠
- p.Thr427Met Single submitter ⚠
- p.Trp141Arg Single submitter ⚠
- p.Trp141Ter Single submitter
- p.Trp284Arg Single submitter bleeding disorder, platelet-type, 21 ⚠
- p.Trp423Arg Single submitter ⚠
- p.Tyr105Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr149Asp Single submitter Inborn genetic diseases ⚠
- p.Tyr23Phe Single submitter ⚠
- p.Tyr379Cys Single submitter ⚠
- p.Val186Glu Single submitter ⚠
- p.Val444Gly Single submitter Inborn genetic diseases ⚠
- p.Ser271Asn No assertion criteria bleeding disorder, platelet-type, 21 ⚠