FOXI1 — 229 ClinVar variants

All ClinVar germline FOXI1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 135 flagged for review →

1 Pathogenic · 4 Likely pathogenic · 18 Conflicting · 8 Benign · 3 Benign/Likely benign · 47 Likely benign · 148 Uncertain significance

Full FOXI1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 135

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 96

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 30

The independent predictors disagree with each other — read with care.

All FOXI1 variants

Pathogenic 1

  • p.Asp250fs Single submitter autosomal recessive nonsyndromic hearing loss 4

Likely pathogenic 4

  • p.Arg213Leu Single submitter sensorineural hearing loss disorder ⚠
  • p.Ser293Arg Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠
  • p.Tyr126Asn Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Tyr31Cys Single submitter hearing loss disorder ⚠

Conflicting classifications of pathogenicity 18

  • c.*176G>T Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Ala275= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Ala287= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Arg123= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Asp106Glu Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠
  • p.Gln148Glu Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠
  • p.Gly103Ala Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠
  • p.Gly274= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Ile21= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Pro239Leu Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠
  • p.Pro243Thr Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠
  • p.Pro324= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Pro340Ala Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠
  • p.Ser10= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Ser163= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Ser242= Single submitter autosomal recessive nonsyndromic hearing loss 4
  • p.Thr226Ile Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠
  • p.Val364Ile Single submitter autosomal recessive nonsyndromic hearing loss 4 ⚠

Benign 8

  • c.*119C>A Multiple submitters autosomal recessive nonsyndromic hearing loss 4
  • p.Arg93= Multiple submitters autosomal recessive nonsyndromic hearing loss 4
  • p.Tyr348= Multiple submitters autosomal recessive nonsyndromic hearing loss 4
  • c.574+254C>G Single submitter
  • c.574+71T>C Single submitter
  • c.575-59G>A Single submitter
  • c.*440G>A Single submitter autosomal recessive nonsyndromic hearing loss 4
  • c.*535A>G Single submitter autosomal recessive nonsyndromic hearing loss 4

Benign/Likely benign 3

  • c.*143A>T Multiple submitters autosomal recessive nonsyndromic hearing loss 4
  • p.Ala338= Multiple submitters autosomal recessive nonsyndromic hearing loss 4
  • p.Arg186= Multiple submitters

Likely benign 47

Uncertain significance 148