FTO — 270 ClinVar variants

All ClinVar germline FTO variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 96 flagged for review →

1 Pathogenic · 2 Likely pathogenic · 6 Conflicting · 32 Benign · 4 Benign/Likely benign · 68 Likely benign · 157 Uncertain significance

Full FTO gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 96

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 72

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 21

The independent predictors disagree with each other — read with care.

All FTO variants

Pathogenic 1

  • p.Ser319Phe No assertion criteria lethal polymalformative syndrome, Boissel type

Likely pathogenic 2

  • c.124-1G>A Single submitter Body mass index quantitative trait locus 14
  • p.Arg316Gln Single submitter lethal polymalformative syndrome, Boissel type

Conflicting classifications of pathogenicity 6

  • c.1240-4G>A Single submitter lethal polymalformative syndrome, Boissel type
  • c.45+8G>T Single submitter lethal polymalformative syndrome, Boissel type
  • p.Ala163Thr Single submitter lethal polymalformative syndrome, Boissel type ⚠
  • p.Asn432Ser Single submitter Inborn genetic diseases ⚠
  • p.Ser256Asn Single submitter lethal polymalformative syndrome, Boissel type ⚠
  • p.Thr393= Single submitter lethal polymalformative syndrome, Boissel type

Benign 32

  • c.*2108G>A Multiple submitters lethal polymalformative syndrome, Boissel type
  • p.Ala134Thr Multiple submitters lethal polymalformative syndrome, Boissel type
  • p.Ala405Val Multiple submitters lethal polymalformative syndrome, Boissel type
  • p.Ile334= Multiple submitters lethal polymalformative syndrome, Boissel type
  • c.1119+25del Single submitter
  • c.1119+25dup Single submitter
  • c.124-4485A>T Single submitter
  • c.1364+10G>C Single submitter
  • c.45+19del Single submitter
  • c.46-30685T>G Single submitter
  • c.46-34929C>T Single submitter
  • c.751+1189G>A Single submitter
  • c.751+736C>T Single submitter
  • c.*1071G>C Single submitter lethal polymalformative syndrome, Boissel type
  • c.*1082G>A Single submitter lethal polymalformative syndrome, Boissel type
  • c.*116C>T Single submitter lethal polymalformative syndrome, Boissel type
  • c.*1315C>T Single submitter lethal polymalformative syndrome, Boissel type
  • c.*1331G>A Single submitter lethal polymalformative syndrome, Boissel type
  • c.*1380G>T Single submitter lethal polymalformative syndrome, Boissel type
  • c.*1403C>T Single submitter lethal polymalformative syndrome, Boissel type
  • c.*1860A>C Single submitter lethal polymalformative syndrome, Boissel type
  • c.*2180C>T Single submitter lethal polymalformative syndrome, Boissel type
  • c.*2210A>G Single submitter lethal polymalformative syndrome, Boissel type
  • c.*2249A>T Single submitter lethal polymalformative syndrome, Boissel type
  • c.*2301G>A Single submitter lethal polymalformative syndrome, Boissel type
  • c.*2334G>A Single submitter lethal polymalformative syndrome, Boissel type
  • c.*2362G>T Single submitter lethal polymalformative syndrome, Boissel type
  • c.*2442A>T Single submitter lethal polymalformative syndrome, Boissel type
  • c.*2551G>A Single submitter lethal polymalformative syndrome, Boissel type
  • c.*619A>C Single submitter lethal polymalformative syndrome, Boissel type
  • c.*721T>G Single submitter lethal polymalformative syndrome, Boissel type
  • c.*931C>A Single submitter lethal polymalformative syndrome, Boissel type

Benign/Likely benign 4

  • p.Gly182Ala Multiple submitters lethal polymalformative syndrome, Boissel type
  • p.Pro33= Multiple submitters lethal polymalformative syndrome, Boissel type
  • p.Thr4= Multiple submitters
  • p.Thr6= Multiple submitters

Likely benign 68

Uncertain significance 157