GALK1 — 542 ClinVar variants

All ClinVar germline GALK1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 133 flagged for review →

28 Pathogenic · 27 Pathogenic/Likely pathogenic · 55 Likely pathogenic · 18 Conflicting · 12 Benign · 6 Benign/Likely benign · 253 Likely benign · 143 Uncertain significance

Full GALK1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 133

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 8

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 84

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 41

The independent predictors disagree with each other — read with care.

All GALK1 variants

Pathogenic 28

  • p.Gln382Ter Multiple submitters galactokinase deficiency
  • p.Gly137fs Multiple submitters galactokinase deficiency
  • p.Leu356Pro Multiple submitters galactokinase deficiency
  • p.Met1Val Multiple submitters galactokinase deficiency
  • c.1107+1G>A Single submitter galactokinase deficiency
  • p.Ala3fs Single submitter galactokinase deficiency
  • p.Arg204fs Single submitter galactokinase deficiency
  • p.Arg287fs Single submitter galactokinase deficiency
  • p.Arg68fs Single submitter galactokinase deficiency
  • p.Asp317_Tyr318insTer Single submitter galactokinase deficiency
  • p.Gln290Ter Single submitter galactokinase deficiency
  • p.Glu23Ter Single submitter galactokinase deficiency
  • p.Glu257fs Single submitter galactokinase deficiency
  • p.Glu261fs Single submitter galactokinase deficiency
  • p.Glu284fs Single submitter galactokinase deficiency
  • p.Glu29fs Single submitter galactokinase deficiency
  • p.Glu80Ter Single submitter galactokinase deficiency
  • p.Leu139Pro Single submitter galactokinase deficiency
  • p.Met1Leu Single submitter galactokinase deficiency
  • p.Met55fs Single submitter galactokinase deficiency
  • p.Phe177fs Single submitter galactokinase deficiency
  • p.Thr354fs Single submitter galactokinase deficiency
  • p.Tyr300_Arg301delinsTer Single submitter galactokinase deficiency
  • p.Tyr318Ter Single submitter galactokinase deficiency
  • p.Val281fs Single submitter galactokinase deficiency
  • p.Val338fs Single submitter galactokinase deficiency
  • p.Asn226fs No assertion criteria galactokinase deficiency
  • p.Ser254fs No assertion criteria galactokinase deficiency

Pathogenic/Likely pathogenic 27

  • c.611+1G>T Multiple submitters galactokinase deficiency
  • c.793+1G>T Multiple submitters galactokinase deficiency
  • c.793+2T>C Multiple submitters galactokinase deficiency
  • c.793+2T>G Multiple submitters galactokinase deficiency
  • p.Arg256Trp Multiple submitters GALK1-related disorder
  • p.Arg301Ter Multiple submitters galactokinase deficiency
  • p.Asp70fs Multiple submitters galactokinase deficiency
  • p.Cys170Ter Multiple submitters galactokinase deficiency
  • p.Gln172Ter Multiple submitters galactokinase deficiency
  • p.Gln369Ter Multiple submitters galactokinase deficiency
  • p.Gln89Ter Multiple submitters galactokinase deficiency
  • p.Gln96Ter Multiple submitters galactokinase deficiency
  • p.Glu100Ter Multiple submitters galactokinase deficiency
  • p.Gly138fs Multiple submitters galactokinase deficiency
  • p.Gly346Ser Multiple submitters galactokinase deficiency
  • p.Gly349Ser Multiple submitters galactokinase deficiency
  • p.Ile285fs Multiple submitters galactokinase deficiency
  • p.Leu122fs Multiple submitters galactokinase deficiency
  • p.Met1Ile Multiple submitters galactokinase deficiency
  • p.Pro237fs Multiple submitters galactokinase deficiency
  • p.Pro28Thr Multiple submitters galactokinase deficiency
  • p.Pro35fs Multiple submitters galactokinase deficiency
  • p.Ser33Ter Multiple submitters galactokinase deficiency
  • p.Thr344Met Multiple submitters galactokinase deficiency ⚠
  • p.Thr352fs Multiple submitters galactokinase deficiency
  • p.Tyr236Ter Multiple submitters galactokinase deficiency
  • p.Val110fs Multiple submitters galactokinase deficiency

Likely pathogenic 55

  • c.355+1G>A Multiple submitters galactokinase deficiency
  • p.Glu174Lys Multiple submitters galactokinase deficiency
  • p.His44Tyr Multiple submitters galactokinase deficiency
  • p.Met307del Multiple submitters galactokinase deficiency
  • p.Thr288fs Multiple submitters galactokinase deficiency
  • c.166-1G>C Single submitter galactokinase deficiency
  • c.166-5_175del Single submitter galactokinase deficiency
  • c.166-5_227dup Single submitter galactokinase deficiency
  • c.475+1G>A Single submitter galactokinase deficiency
  • c.476-1G>C Single submitter galactokinase deficiency
  • c.476-2A>G Single submitter galactokinase deficiency
  • c.612-1G>A Single submitter galactokinase deficiency
  • c.612-1G>C Single submitter galactokinase deficiency
  • c.612-1G>T Single submitter galactokinase deficiency
  • c.944+1G>T Single submitter galactokinase deficiency
  • c.945-36_992del Single submitter galactokinase deficiency
  • p.Ala247fs Single submitter galactokinase deficiency
  • p.Ala291fs Single submitter galactokinase deficiency
  • p.Arg279fs Single submitter galactokinase deficiency
  • p.Arg297fs Single submitter galactokinase deficiency
  • p.Arg366fs Single submitter galactokinase deficiency
  • p.Cys203Ter Single submitter galactokinase deficiency
  • p.Gln154Ter Single submitter galactokinase deficiency
  • p.Gln194Ter Single submitter galactokinase deficiency
  • p.Gln259Ter Single submitter galactokinase deficiency
  • p.Gln49fs Single submitter galactokinase deficiency
  • p.Glu146fs Single submitter galactokinase deficiency
  • p.Glu174Ter Single submitter galactokinase deficiency
  • p.Glu262Ter Single submitter galactokinase deficiency
  • p.Glu264fs Single submitter galactokinase deficiency
  • p.Glu273fs Single submitter galactokinase deficiency
  • p.Glu84Ter Single submitter galactokinase deficiency
  • p.Gly183fs Single submitter galactokinase deficiency
  • p.His229fs Single submitter galactokinase deficiency
  • p.Leu135fs Single submitter galactokinase deficiency
  • p.Lys111Ter Single submitter galactokinase deficiency
  • p.Lys69Ter Single submitter galactokinase deficiency
  • p.Met192fs Single submitter galactokinase deficiency
  • p.Met1Thr Single submitter galactokinase deficiency
  • p.Pro134fs Single submitter galactokinase deficiency
  • p.Pro362fs Single submitter galactokinase deficiency
  • p.Ser142fs Single submitter galactokinase deficiency
  • p.Ser160Ter Single submitter galactokinase deficiency
  • p.Ser176fs Single submitter galactokinase deficiency
  • p.Trp106Ter Single submitter galactokinase deficiency
  • p.Tyr117fs Single submitter galactokinase deficiency
  • p.Tyr300fs Single submitter galactokinase deficiency
  • p.Tyr339Ter Single submitter galactokinase deficiency
  • p.Tyr379Ter Single submitter galactokinase deficiency
  • p.Val130fs Single submitter galactokinase deficiency
  • p.Val270fs Single submitter galactokinase deficiency
  • p.Val281Met Single submitter galactokinase deficiency
  • p.Val282fs Single submitter galactokinase deficiency
  • p.Glu27Ter No assertion criteria galactokinase deficiency
  • p.Val238fs No assertion criteria galactokinase deficiency

Conflicting classifications of pathogenicity 18

Benign 12

Benign/Likely benign 6

  • c.1107+5G>A Multiple submitters galactokinase deficiency
  • c.1108-40C>T Multiple submitters galactokinase deficiency
  • c.611+34G>A Multiple submitters galactokinase deficiency
  • p.Glu319= Multiple submitters galactokinase deficiency
  • p.Gly373= Multiple submitters junctional epidermolysis bullosa with pyloric atresia
  • p.Val329= Multiple submitters galactokinase deficiency

Likely benign 253

  • c.612-7A>C Multiple submitters galactokinase deficiency
  • c.*32C>T Multiple submitters galactokinase deficiency
  • p.Asp316= Multiple submitters galactokinase deficiency
  • p.His367= Multiple submitters galactokinase deficiency
  • p.Leu72= Multiple submitters galactokinase deficiency
  • p.Tyr372= Multiple submitters Inborn genetic diseases
  • p.Val282= Multiple submitters galactokinase deficiency
  • c.1107+12C>T Single submitter galactokinase deficiency
  • c.1107+14A>G Single submitter galactokinase deficiency
  • c.1107+18C>T Single submitter galactokinase deficiency
  • c.1107+7G>A Single submitter galactokinase deficiency
  • c.1107+9G>A Single submitter galactokinase deficiency
  • c.1108-11G>A Single submitter galactokinase deficiency
  • c.1108-12C>T Single submitter galactokinase deficiency
  • c.1108-15G>A Single submitter galactokinase deficiency
  • c.1108-17C>A Single submitter galactokinase deficiency
  • c.1108-17C>T Single submitter galactokinase deficiency
  • c.1108-18C>G Single submitter galactokinase deficiency
  • c.1108-19C>T Single submitter galactokinase deficiency
  • c.1108-20C>T Single submitter galactokinase deficiency
  • c.165+11G>C Single submitter galactokinase deficiency
  • c.165+13A>T Single submitter galactokinase deficiency
  • c.165+14C>A Single submitter galactokinase deficiency
  • c.165+15G>A Single submitter galactokinase deficiency
  • c.165+172T>A Single submitter
  • c.165+20G>T Single submitter galactokinase deficiency
  • c.166-10C>T Single submitter galactokinase deficiency
  • c.166-12C>G Single submitter galactokinase deficiency
  • c.166-14G>A Single submitter galactokinase deficiency
  • c.166-18_166-3dup Single submitter galactokinase deficiency
  • c.166-5_166-4delinsAT Single submitter galactokinase deficiency
  • c.166-6dup Single submitter galactokinase deficiency
  • c.166-6T>C Single submitter galactokinase deficiency
  • c.166-7C>A Single submitter galactokinase deficiency
  • c.166-8C>A Single submitter galactokinase deficiency
  • c.166-9T>C Single submitter galactokinase deficiency
  • c.355+10C>G Single submitter galactokinase deficiency
  • c.355+11C>G Single submitter galactokinase deficiency
  • c.355+14G>T Single submitter galactokinase deficiency
  • c.355+7G>C Single submitter galactokinase deficiency
  • c.355+8G>A Single submitter galactokinase deficiency
  • c.355+8G>T Single submitter galactokinase deficiency
  • c.355+9C>A Single submitter galactokinase deficiency
  • c.356-10T>C Single submitter galactokinase deficiency
  • c.356-11T>G Single submitter galactokinase deficiency
  • c.356-19C>T Single submitter galactokinase deficiency
  • c.356-20A>G Single submitter galactokinase deficiency
  • c.356-8C>A Single submitter galactokinase deficiency
  • c.356-8C>T Single submitter galactokinase deficiency
  • c.475+14C>T Single submitter galactokinase deficiency
  • c.475+19C>G Single submitter galactokinase deficiency
  • c.475+7G>C Single submitter galactokinase deficiency
  • c.476-10T>C Single submitter galactokinase deficiency
  • c.476-17C>T Single submitter galactokinase deficiency
  • c.476-17dup Single submitter galactokinase deficiency
  • c.476-23C>A Single submitter
  • c.476-8_476-4del Single submitter galactokinase deficiency
  • c.476-9G>A Single submitter galactokinase deficiency
  • c.611+10G>A Single submitter galactokinase deficiency
  • c.611+11C>A Single submitter galactokinase deficiency
  • c.611+15C>A Single submitter galactokinase deficiency
  • c.611+15C>T Single submitter galactokinase deficiency
  • c.611+19G>A Single submitter galactokinase deficiency
  • c.611+19G>T Single submitter galactokinase deficiency
  • c.612-16T>C Single submitter galactokinase deficiency
  • c.612-17T>C Single submitter galactokinase deficiency
  • c.612-18A>G Single submitter galactokinase deficiency
  • c.612-20C>G Single submitter galactokinase deficiency
  • c.612-4C>G Single submitter galactokinase deficiency
  • c.612-6C>T Single submitter galactokinase deficiency
  • c.612-8C>T Single submitter galactokinase deficiency
  • c.793+12C>G Single submitter galactokinase deficiency
  • c.793+13A>G Single submitter galactokinase deficiency
  • c.793+15G>A Single submitter galactokinase deficiency
  • c.793+192A>C Single submitter
  • c.793+19C>T Single submitter galactokinase deficiency
  • c.794-12T>C Single submitter galactokinase deficiency
  • c.794-14T>C Single submitter galactokinase deficiency
  • c.794-17T>G Single submitter galactokinase deficiency
  • c.794-208G>A Single submitter
  • c.794-4C>A Single submitter galactokinase deficiency
  • c.794-6C>G Single submitter galactokinase deficiency
  • c.794-6C>T Single submitter galactokinase deficiency
  • c.944+16C>T Single submitter galactokinase deficiency
  • c.944+17G>A Single submitter galactokinase deficiency
  • c.944+20C>G Single submitter galactokinase deficiency
  • c.945-14T>C Single submitter galactokinase deficiency
  • c.945-20C>A Single submitter galactokinase deficiency
  • c.945-4G>A Single submitter galactokinase deficiency
  • p.Ala10= Single submitter galactokinase deficiency
  • p.Ala14= Single submitter galactokinase deficiency
  • p.Ala165= Single submitter galactokinase deficiency
  • p.Ala167= Single submitter galactokinase deficiency
  • p.Ala173= Single submitter galactokinase deficiency
  • p.Ala19= Single submitter galactokinase deficiency
  • p.Ala198= Single submitter galactokinase deficiency
  • p.Ala219= Single submitter galactokinase deficiency
  • p.Ala247= Single submitter galactokinase deficiency
  • p.Ala26= Single submitter galactokinase deficiency
  • p.Ala278= Single submitter galactokinase deficiency
  • p.Ala289= Single submitter galactokinase deficiency
  • p.Ala292= Single submitter galactokinase deficiency
  • p.Ala293= Single submitter galactokinase deficiency
  • p.Ala294= Single submitter galactokinase deficiency
  • p.Ala31= Single submitter galactokinase deficiency
  • p.Ala332= Single submitter galactokinase deficiency
  • p.Ala34= Single submitter galactokinase deficiency
  • p.Ala364= Single submitter galactokinase deficiency
  • p.Ala387= Single submitter galactokinase deficiency
  • p.Ala82= Single submitter galactokinase deficiency
  • p.Arg166= Single submitter galactokinase deficiency
  • p.Arg21= Single submitter galactokinase deficiency
  • p.Arg239= Single submitter galactokinase deficiency
  • p.Arg248= Single submitter galactokinase deficiency
  • p.Arg267= Single submitter galactokinase deficiency
  • p.Arg277= Single submitter galactokinase deficiency
  • p.Arg279= Single submitter galactokinase deficiency
  • p.Arg286= Single submitter galactokinase deficiency
  • p.Arg301= Single submitter galactokinase deficiency
  • p.Arg305= Single submitter galactokinase deficiency
  • p.Arg312His Single submitter galactokinase deficiency
  • p.Arg342= Single submitter galactokinase deficiency
  • p.Arg366= Single submitter galactokinase deficiency
  • p.Arg68= Single submitter galactokinase deficiency
  • p.Arg87= Single submitter galactokinase deficiency
  • p.Arg97= Single submitter galactokinase deficiency
  • p.Asn108= Single submitter galactokinase deficiency
  • p.Asn39= Single submitter galactokinase deficiency
  • p.Asn48= Single submitter galactokinase deficiency
  • p.Asp215= Single submitter galactokinase deficiency
  • p.Asp326= Single submitter galactokinase deficiency
  • p.Asp385= Single submitter galactokinase deficiency
  • p.Asp46= Single submitter galactokinase deficiency
  • p.Cys157= Single submitter galactokinase deficiency
  • p.Cys322= Single submitter galactokinase deficiency
  • p.Gln115= Single submitter galactokinase deficiency
  • p.Gln155= Single submitter galactokinase deficiency
  • p.Gln172= Single submitter galactokinase deficiency
  • p.Gln49= Single submitter galactokinase deficiency
  • p.Gln6= Single submitter galactokinase deficiency
  • p.Glu100= Single submitter galactokinase deficiency
  • p.Glu11= Single submitter galactokinase deficiency
  • p.Glu146= Single submitter galactokinase deficiency
  • p.Glu23= Single submitter galactokinase deficiency
  • p.Glu253= Single submitter galactokinase deficiency
  • p.Glu257= Single submitter galactokinase deficiency
  • p.Glu27= Single submitter galactokinase deficiency
  • p.Glu273= Single submitter galactokinase deficiency
  • p.Glu330= Single submitter galactokinase deficiency
  • p.Gly112= Single submitter galactokinase deficiency
  • p.Gly124= Single submitter galactokinase deficiency
  • p.Gly136= Single submitter galactokinase deficiency
  • p.Gly179= Single submitter galactokinase deficiency
  • p.Gly25= Single submitter galactokinase deficiency
  • p.Gly274= Single submitter galactokinase deficiency
  • p.Gly283= Single submitter galactokinase deficiency
  • p.Gly304= Single submitter galactokinase deficiency
  • p.Gly337= Single submitter galactokinase deficiency
  • p.Gly345= Single submitter galactokinase deficiency
  • p.Gly374= Single submitter galactokinase deficiency
  • p.Gly50= Single submitter galactokinase deficiency
  • p.Gly65= Single submitter galactokinase deficiency
  • p.His197= Single submitter galactokinase deficiency
  • p.His311= Single submitter galactokinase deficiency
  • p.His363= Single submitter galactokinase deficiency
  • p.His371= Single submitter galactokinase deficiency
  • p.Ile163= Single submitter galactokinase deficiency
  • p.Ile41= Single submitter galactokinase deficiency
  • p.Leu13= Single submitter galactokinase deficiency
  • p.Leu139= Single submitter galactokinase deficiency
  • p.Leu153= Single submitter galactokinase deficiency
  • p.Leu191= Single submitter galactokinase deficiency
  • p.Leu200= Single submitter galactokinase deficiency
  • p.Leu210= Single submitter galactokinase deficiency
  • p.Leu213= Single submitter galactokinase deficiency
  • p.Leu218= Single submitter galactokinase deficiency
  • p.Leu221= Single submitter galactokinase deficiency
  • p.Leu231= Single submitter galactokinase deficiency
  • p.Leu250= Single submitter galactokinase deficiency
  • p.Leu255= Single submitter galactokinase deficiency
  • p.Leu260= Single submitter galactokinase deficiency
  • p.Leu269= Single submitter galactokinase deficiency
  • p.Leu30= Single submitter galactokinase deficiency
  • p.Leu306= Single submitter galactokinase deficiency
  • p.Leu314= Single submitter galactokinase deficiency
  • p.Leu325= Single submitter galactokinase deficiency
  • p.Leu328= Single submitter galactokinase deficiency
  • p.Leu380= Single submitter galactokinase deficiency
  • p.Leu390= Single submitter galactokinase deficiency
  • p.Leu392= Single submitter galactokinase deficiency
  • p.Leu4= Single submitter galactokinase deficiency
  • p.Leu51= Single submitter galactokinase deficiency
  • p.Leu53= Single submitter galactokinase deficiency
  • p.Leu57= Single submitter galactokinase deficiency
  • p.Leu59= Single submitter galactokinase deficiency
  • p.Leu63= Single submitter galactokinase deficiency
  • p.Leu88= Single submitter galactokinase deficiency
  • p.Leu92= Single submitter galactokinase deficiency
  • p.Leu99= Single submitter galactokinase deficiency
  • p.Lys195= Single submitter galactokinase deficiency
  • p.Lys252= Single submitter galactokinase deficiency
  • p.Lys69= Single submitter galactokinase deficiency
  • p.Phe177= Single submitter galactokinase deficiency
  • p.Phe20= Single submitter galactokinase deficiency
  • p.Phe303= Single submitter galactokinase deficiency
  • p.Pro123= Single submitter galactokinase deficiency
  • p.Pro181= Single submitter galactokinase deficiency
  • p.Pro28= Single submitter galactokinase deficiency
  • p.Pro35= Single submitter galactokinase deficiency
  • p.Pro54= Single submitter galactokinase deficiency
  • p.Pro67= Single submitter galactokinase deficiency
  • p.Pro7= Single submitter galactokinase deficiency
  • p.Pro85= Single submitter galactokinase deficiency
  • p.Pro91= Single submitter galactokinase deficiency
  • p.Pro93= Single submitter galactokinase deficiency
  • p.Ser132= Single submitter galactokinase deficiency
  • p.Ser140= Single submitter galactokinase deficiency
  • p.Ser144= Single submitter galactokinase deficiency
  • p.Ser160= Single submitter galactokinase deficiency
  • p.Ser233= Single submitter galactokinase deficiency
  • p.Ser310= Single submitter galactokinase deficiency
  • p.Ser313= Single submitter galactokinase deficiency
  • p.Ser359= Single submitter galactokinase deficiency
  • p.Ser98= Single submitter galactokinase deficiency
  • p.Thr149= Single submitter galactokinase deficiency
  • p.Thr162= Single submitter galactokinase deficiency
  • p.Thr288= Single submitter galactokinase deficiency
  • p.Thr344= Single submitter galactokinase deficiency
  • p.Thr377= Single submitter galactokinase deficiency
  • p.Thr45= Single submitter galactokinase deficiency
  • p.Thr61= Single submitter galactokinase deficiency
  • p.Thr77= Single submitter galactokinase deficiency
  • p.Thr78= Single submitter galactokinase deficiency
  • p.Tyr116= Single submitter galactokinase deficiency
  • p.Tyr117= Single submitter galactokinase deficiency
  • p.Tyr150= Single submitter galactokinase deficiency
  • p.Tyr236= Single submitter galactokinase deficiency
  • p.Tyr300= Single submitter galactokinase deficiency
  • p.Tyr339= Single submitter galactokinase deficiency
  • p.Tyr379= Single submitter galactokinase deficiency
  • p.Tyr47= Single submitter galactokinase deficiency
  • p.Val113= Single submitter galactokinase deficiency
  • p.Val133= Single submitter galactokinase deficiency
  • p.Val147= Single submitter galactokinase deficiency
  • p.Val169= Single submitter galactokinase deficiency
  • p.Val220= Single submitter galactokinase deficiency
  • p.Val227= Single submitter galactokinase deficiency
  • p.Val238= Single submitter galactokinase deficiency
  • p.Val258= Single submitter galactokinase deficiency
  • p.Val281= Single submitter galactokinase deficiency
  • p.Val335= Single submitter galactokinase deficiency
  • p.Val38= Single submitter galactokinase deficiency
  • c.355+4T>G No assertion criteria GALK1-related disorder

Uncertain significance 143