GALNT12 — 1708 ClinVar variants

All ClinVar germline GALNT12 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 980 flagged for review →

68 Conflicting · 60 Benign · 172 Benign/Likely benign · 265 Likely benign · 1143 Uncertain significance

Full GALNT12 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 980

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 38

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 752

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 752

Predictors split 190

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 190

All GALNT12 variants

Conflicting classifications of pathogenicity 68

Benign 60

  • c.1036-42del Multiple submitters hereditary neoplastic syndrome
  • c.1212+128A>T Multiple submitters
  • c.1213-113C>G Multiple submitters
  • c.1344+61G>T Multiple submitters
  • c.1458+58G>T Multiple submitters
  • c.372-94G>C Multiple submitters
  • c.541+74G>T Multiple submitters
  • c.917+24C>T Multiple submitters
  • c.*171A>G Multiple submitters
  • p.Gln299= Multiple submitters hereditary neoplastic syndrome
  • c.1036-204A>G Single submitter
  • c.1212+178C>G Single submitter
  • c.1344+135dup Single submitter
  • c.1458+189C>T Single submitter
  • c.1459-105T>A Single submitter
  • c.1459-216G>A Single submitter
  • c.1459-234C>A Single submitter
  • c.1459-327T>A Single submitter
  • c.372-27_372-20del Single submitter colorectal cancer, susceptibility to, 1
  • c.541+124C>T Single submitter
  • c.541+285G>A Single submitter
  • c.542-304T>G Single submitter
  • c.732-171T>G Single submitter
  • c.732-229T>C Single submitter
  • c.918-263A>C Single submitter
  • c.*1A>C Single submitter colorectal cancer, susceptibility to, 1
  • c.*67A>T Single submitter
  • c.*6C>T Single submitter colorectal cancer, susceptibility to, 1
  • c.*7G>A Single submitter colorectal cancer, susceptibility to, 1
  • c.*8T>C Single submitter colorectal cancer, susceptibility to, 1
  • p.Ala211= Single submitter colorectal cancer, susceptibility to, 1
  • p.Arg212= Single submitter colorectal cancer, susceptibility to, 1
  • p.Arg442= Single submitter colorectal cancer, susceptibility to, 1
  • p.Arg497= Single submitter colorectal cancer, susceptibility to, 1
  • p.Arg61= Single submitter colorectal cancer, susceptibility to, 1
  • p.Asn134= Single submitter colorectal cancer, susceptibility to, 1
  • p.Asn374= Single submitter colorectal cancer, susceptibility to, 1
  • p.Asn568= Single submitter colorectal cancer, susceptibility to, 1
  • p.Asn73= Single submitter colorectal cancer, susceptibility to, 1
  • p.Asp131= Single submitter colorectal cancer, susceptibility to, 1
  • p.Gln243= Single submitter colorectal cancer, susceptibility to, 1
  • p.Glu13= Single submitter colorectal cancer, susceptibility to, 1
  • p.Glu323= Single submitter colorectal cancer, susceptibility to, 1
  • p.Glu354= Single submitter colorectal cancer, susceptibility to, 1
  • p.Gly88= Single submitter colorectal cancer, susceptibility to, 1
  • p.His114= Single submitter colorectal cancer, susceptibility to, 1
  • p.His246= Single submitter colorectal cancer, susceptibility to, 1
  • p.Ile141= Single submitter colorectal cancer, susceptibility to, 1
  • p.Leu173= Single submitter colorectal cancer, susceptibility to, 1
  • p.Leu208= Single submitter colorectal cancer, susceptibility to, 1
  • p.Leu213= Single submitter colorectal cancer, susceptibility to, 1
  • p.Lys530= Single submitter colorectal cancer, susceptibility to, 1
  • p.Pro291= Single submitter colorectal cancer, susceptibility to, 1
  • p.Ser372= Single submitter colorectal cancer, susceptibility to, 1
  • p.Ser492= Single submitter colorectal cancer, susceptibility to, 1
  • p.Thr138= Single submitter colorectal cancer, susceptibility to, 1
  • p.Tyr321= Single submitter colorectal cancer, susceptibility to, 1
  • p.Val290= Single submitter colorectal cancer, susceptibility to, 1
  • p.Val317= Single submitter colorectal cancer, susceptibility to, 1
  • p.Val438= Single submitter colorectal cancer, susceptibility to, 1

Benign/Likely benign 172

  • c.1605+4G>A Multiple submitters colorectal cancer, susceptibility to, 1
  • c.372-14C>T Multiple submitters colorectal cancer, susceptibility to, 1
  • c.372-7T>A Multiple submitters hereditary neoplastic syndrome
  • c.918-3dup Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala148= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala20= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala202= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala218= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala219= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala48= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala508= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala551= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala74= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ala77= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg116= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg12= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg120Pro Multiple submitters hereditary neoplastic syndrome ⚠
  • p.Arg137= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg15= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg201= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg282= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg295= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg398= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg401= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg41= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg564= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg60= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg67= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg78= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg8= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg83= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Arg99= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asn189= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asn203= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asn399= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asn499= Multiple submitters hereditary neoplastic syndrome
  • p.Asn528= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp133= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp222= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp228= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp258= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp261= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp261Asn Multiple submitters hereditary neoplastic syndrome
  • p.Asp280= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp303= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp409= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp418= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Asp441= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Cys10= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Cys125= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Cys254= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Cys521= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gln348= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gln415= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gln87= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu119= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu119Val Multiple submitters hereditary neoplastic syndrome
  • p.Glu181= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu190= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu338= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu405= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu440= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu578= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu95= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Glu96= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly17= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly193= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly221= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly269= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly277= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly3= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly312= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly336= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly337= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly453= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly481= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Gly505= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.His182= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.His234= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.His356= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.His360= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.His437= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.His480= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.His541= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ile105= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ile172= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ile200= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ile260= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ile276= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ile346= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ile517= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu107= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu113= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu167= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu199= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu214= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu22= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu227Val Multiple submitters
  • p.Leu24= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu28= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu283= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu377= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu429= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu436= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu478= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu516= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu533= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu562= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu581= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu91= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Leu93= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Lys196= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Lys375= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Lys494= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Lys573= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Phe265= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Phe279= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Phe315= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Phe445= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Phe446= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Phe488= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Phe559= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Phe576= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro123= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro164= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro195= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro240= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro255= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro274= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro301= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro308= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro357= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro464= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro503= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro561= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro58= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro63= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Pro68= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser108= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser112= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser139= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser158= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser163= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser192= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser250= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser307= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser359= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser380= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser555= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser556= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser569= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Ser97= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Thr225= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Thr225Ser Multiple submitters
  • p.Thr286= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Thr330= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Thr431= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Thr491= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Thr500= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Thr55= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Tyr106= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Tyr132= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Tyr267= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Tyr371= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Tyr477= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Tyr490= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Val159= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Val171= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Val23= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Val284= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Val302= Multiple submitters colorectal cancer, susceptibility to, 1
  • p.Val334= Multiple submitters colorectal cancer, susceptibility to, 1

Likely benign 265

Uncertain significance 1143

Showing the top 300 by review status; the full set is in the sitemap.