GAN — 855 ClinVar variants

All ClinVar germline GAN variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 344 flagged for review →

34 Pathogenic · 5 Pathogenic/Likely pathogenic · 19 Likely pathogenic · 31 Conflicting · 57 Benign · 10 Benign/Likely benign · 255 Likely benign · 444 Uncertain significance

Full GAN gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 344

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 3

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 217

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 217

Predictors split 117

The independent predictors disagree with each other — read with care.

All GAN variants

Pathogenic 34

Pathogenic/Likely pathogenic 5

  • c.1502+1G>T Multiple submitters giant axonal neuropathy 1
  • c.851+1G>A Multiple submitters Inborn genetic diseases
  • p.Arg545His Multiple submitters giant axonal neuropathy 1
  • p.Glu486Lys Multiple submitters Inborn genetic diseases ⚠
  • p.Ile209fs Multiple submitters giant axonal neuropathy 1

Likely pathogenic 19

Conflicting classifications of pathogenicity 31

Benign 57

Benign/Likely benign 10

  • c.1502+11A>G Multiple submitters giant axonal neuropathy 1
  • c.282+7_282+9del Multiple submitters giant axonal neuropathy 1
  • c.283-20T>C Multiple submitters giant axonal neuropathy 1
  • c.633+19A>G Multiple submitters giant axonal neuropathy 1
  • c.634-15T>C Multiple submitters giant axonal neuropathy 1
  • p.Ile413= Multiple submitters giant axonal neuropathy 1
  • p.Leu16= Multiple submitters Inborn genetic diseases
  • p.Pro53= Multiple submitters Inborn genetic diseases
  • p.Pro562Ala Multiple submitters giant axonal neuropathy 1
  • p.Tyr394= Multiple submitters Inborn genetic diseases

Likely benign 255

  • c.1086+9C>G Multiple submitters giant axonal neuropathy 1
  • c.283-40G>T Multiple submitters
  • c.634-55A>G Multiple submitters
  • c.851+15G>A Multiple submitters giant axonal neuropathy 1
  • c.852-13T>C Multiple submitters giant axonal neuropathy 1
  • c.*211C>T Multiple submitters giant axonal neuropathy 1
  • p.Ala220= Multiple submitters Inborn genetic diseases
  • p.Arg96= Multiple submitters giant axonal neuropathy 1
  • p.Asn188= Multiple submitters Inborn genetic diseases
  • p.Asp110= Multiple submitters giant axonal neuropathy 1
  • p.Glu247= Multiple submitters giant axonal neuropathy 1
  • p.Gly429= Multiple submitters Inborn genetic diseases
  • p.Ile200= Multiple submitters giant axonal neuropathy 1
  • p.Ile532= Multiple submitters Inborn genetic diseases
  • p.Leu120= Multiple submitters Inborn genetic diseases
  • p.Leu454= Multiple submitters Inborn genetic diseases
  • p.Phe331= Multiple submitters giant axonal neuropathy 1
  • p.Phe367= Multiple submitters giant axonal neuropathy 1
  • p.Pro315= Multiple submitters Inborn genetic diseases
  • p.Pro513= Multiple submitters giant axonal neuropathy 1
  • p.Ser224= Multiple submitters giant axonal neuropathy 1
  • p.Ser52= Multiple submitters giant axonal neuropathy 1
  • p.Ser79= Multiple submitters giant axonal neuropathy 1
  • p.Thr115= Multiple submitters Inborn genetic diseases
  • p.Thr355= Multiple submitters giant axonal neuropathy 1
  • p.Tyr530= Multiple submitters Inborn genetic diseases
  • p.Val164= Multiple submitters giant axonal neuropathy 1
  • p.Val472= Multiple submitters giant axonal neuropathy 1
  • p.Val531= Multiple submitters giant axonal neuropathy 1
  • c.1086+10T>G Single submitter giant axonal neuropathy 1
  • c.1086+13T>G Single submitter giant axonal neuropathy 1
  • c.1086+19_1086+22del Single submitter giant axonal neuropathy 1
  • c.1086+219C>A Single submitter
  • c.1086+259C>T Single submitter
  • c.1086+269C>T Single submitter
  • c.1086+8A>C Single submitter giant axonal neuropathy 1
  • c.1087-16G>A Single submitter giant axonal neuropathy 1
  • c.1087-17C>T Single submitter giant axonal neuropathy 1
  • c.1087-20G>A Single submitter giant axonal neuropathy 1
  • c.1087-8A>T Single submitter giant axonal neuropathy 1
  • c.1236+11C>T Single submitter giant axonal neuropathy 1
  • c.1236+17G>T Single submitter giant axonal neuropathy 1
  • c.1236+7A>T Single submitter giant axonal neuropathy 1
  • c.1237-109C>G Single submitter
  • c.1237-11T>G Single submitter giant axonal neuropathy 1
  • c.1237-12C>T Single submitter giant axonal neuropathy 1
  • c.1237-17T>A Single submitter giant axonal neuropathy 1
  • c.1237-17T>C Single submitter giant axonal neuropathy 1
  • c.1237-272A>T Single submitter
  • c.1373+14G>A Single submitter giant axonal neuropathy 1
  • c.1373+16G>A Single submitter giant axonal neuropathy 1
  • c.1373+9C>T Single submitter giant axonal neuropathy 1
  • c.1374-14G>T Single submitter giant axonal neuropathy 1
  • c.1374-18C>G Single submitter giant axonal neuropathy 1
  • c.1374-18C>T Single submitter giant axonal neuropathy 1
  • c.1374-19G>A Single submitter giant axonal neuropathy 1
  • c.1374-20C>T Single submitter giant axonal neuropathy 1
  • c.1374-9G>A Single submitter giant axonal neuropathy 1
  • c.1502+11dup Single submitter giant axonal neuropathy 1
  • c.1502+13G>T Single submitter
  • c.1502+147G>A Single submitter
  • c.1502+14G>T Single submitter giant axonal neuropathy 1
  • c.1502+20C>G Single submitter giant axonal neuropathy 1
  • c.1503-11T>C Single submitter giant axonal neuropathy 1
  • c.1503-16T>C Single submitter giant axonal neuropathy 1
  • c.1503-6T>C Single submitter giant axonal neuropathy 1
  • c.1503-7T>C Single submitter giant axonal neuropathy 1
  • c.1503-8G>A Single submitter giant axonal neuropathy 1
  • c.1612+11T>A Single submitter
  • c.1612+15G>T Single submitter giant axonal neuropathy 1
  • c.1612+16T>G Single submitter giant axonal neuropathy 1
  • c.1612+7G>A Single submitter giant axonal neuropathy 1
  • c.1613-37G>A Single submitter
  • c.167+16C>G Single submitter giant axonal neuropathy 1
  • c.167+16C>T Single submitter giant axonal neuropathy 1
  • c.168-11C>T Single submitter giant axonal neuropathy 1
  • c.168-12T>C Single submitter giant axonal neuropathy 1
  • c.168-19A>G Single submitter giant axonal neuropathy 1
  • c.168-5C>G Single submitter giant axonal neuropathy 1
  • c.282+15_282+18del Single submitter giant axonal neuropathy 1
  • c.283-10A>G Single submitter giant axonal neuropathy 1
  • c.283-149dup Single submitter
  • c.283-150_283-149del Single submitter
  • c.283-229A>G Single submitter
  • c.633+10A>G Single submitter giant axonal neuropathy 1
  • c.633+11T>C Single submitter giant axonal neuropathy 1
  • c.633+298C>T Single submitter
  • c.633+7G>A Single submitter giant axonal neuropathy 1
  • c.634-230C>T Single submitter
  • c.634-9C>T Single submitter giant axonal neuropathy 1
  • c.851+119dup Single submitter
  • c.851+258C>G Single submitter
  • c.852-15T>G Single submitter giant axonal neuropathy 1
  • c.852-17C>G Single submitter giant axonal neuropathy 1
  • c.852-17C>T Single submitter giant axonal neuropathy 1
  • c.852-25A>G Single submitter
  • c.852-329T>C Single submitter
  • c.852-337A>C Single submitter
  • c.852-4T>C Single submitter giant axonal neuropathy 1
  • c.852-5del Single submitter giant axonal neuropathy 1
  • c.852-6C>T Single submitter giant axonal neuropathy 1
  • c.852-8T>C Single submitter giant axonal neuropathy 1
  • c.973+13G>A Single submitter giant axonal neuropathy 1
  • c.973+17A>C Single submitter giant axonal neuropathy 1
  • c.973+18A>G Single submitter giant axonal neuropathy 1
  • c.973+19T>G Single submitter giant axonal neuropathy 1
  • c.973+237C>A Single submitter
  • c.973+9C>G Single submitter giant axonal neuropathy 1
  • c.974-11G>T Single submitter giant axonal neuropathy 1
  • c.974-13T>C Single submitter giant axonal neuropathy 1
  • c.974-16C>G Single submitter giant axonal neuropathy 1
  • c.974-16C>T Single submitter giant axonal neuropathy 1
  • c.974-19T>A Single submitter giant axonal neuropathy 1
  • c.974-225G>T Single submitter
  • c.974-8C>A Single submitter giant axonal neuropathy 1
  • c.974-9T>A Single submitter giant axonal neuropathy 1
  • c.-47G>A Single submitter
  • c.*115A>T Single submitter
  • c.*1175C>A Single submitter giant axonal neuropathy 1
  • c.*1839G>A Single submitter giant axonal neuropathy 1
  • c.*1949G>C Single submitter giant axonal neuropathy 1
  • c.*2332T>A Single submitter giant axonal neuropathy 1
  • c.*2584A>G Single submitter giant axonal neuropathy 1
  • c.*48C>T Single submitter giant axonal neuropathy 1
  • c.*747G>T Single submitter giant axonal neuropathy 1
  • c.*964C>G Single submitter giant axonal neuropathy 1
  • p.Ala141= Single submitter giant axonal neuropathy 1
  • p.Ala19= Single submitter giant axonal neuropathy 1
  • p.Ala2= Single submitter giant axonal neuropathy 1
  • p.Ala261= Single submitter giant axonal neuropathy 1
  • p.Ala291= Single submitter giant axonal neuropathy 1
  • p.Ala417= Single submitter giant axonal neuropathy 1
  • p.Ala461= Single submitter giant axonal neuropathy 1
  • p.Ala482= Single submitter giant axonal neuropathy 1
  • p.Ala49= Single submitter giant axonal neuropathy 1
  • p.Ala51= Single submitter giant axonal neuropathy 1
  • p.Ala571= Single submitter giant axonal neuropathy 1
  • p.Ala572= Single submitter giant axonal neuropathy 1
  • p.Ala576= Single submitter giant axonal neuropathy 1
  • p.Ala6= Single submitter giant axonal neuropathy 1
  • p.Arg24= Single submitter giant axonal neuropathy 1
  • p.Arg28= Single submitter giant axonal neuropathy 1
  • p.Arg293= Single submitter giant axonal neuropathy 1
  • p.Arg444= Single submitter giant axonal neuropathy 1
  • p.Arg84= Single submitter giant axonal neuropathy 1
  • p.Asn133= Single submitter giant axonal neuropathy 1
  • p.Asn191= Single submitter giant axonal neuropathy 1
  • p.Asn302= Single submitter
  • p.Asp100= Single submitter giant axonal neuropathy 1
  • p.Asp163= Single submitter giant axonal neuropathy 1
  • p.Asp507= Single submitter giant axonal neuropathy 1
  • p.Asp564= Single submitter giant axonal neuropathy 1
  • p.Asp67= Single submitter giant axonal neuropathy 1
  • p.Asp9= Single submitter giant axonal neuropathy 1
  • p.Cys134= Single submitter giant axonal neuropathy 1
  • p.Cys274= Single submitter giant axonal neuropathy 1
  • p.Cys294= Single submitter giant axonal neuropathy 1
  • p.Cys415= Single submitter giant axonal neuropathy 1
  • p.Gln176= Single submitter giant axonal neuropathy 1
  • p.Gln257= Single submitter giant axonal neuropathy 1
  • p.Gln258= Single submitter giant axonal neuropathy 1
  • p.Gln404= Single submitter giant axonal neuropathy 1
  • p.Glu155= Single submitter giant axonal neuropathy 1
  • p.Glu273= Single submitter giant axonal neuropathy 1
  • p.Glu3= Single submitter giant axonal neuropathy 1
  • p.Glu436= Single submitter
  • p.Glu493= Single submitter
  • p.Glu498= Single submitter giant axonal neuropathy 1
  • p.Glu85= Single submitter giant axonal neuropathy 1
  • p.Gly190= Single submitter giant axonal neuropathy 1
  • p.Gly225= Single submitter giant axonal neuropathy 1
  • p.Gly270= Single submitter giant axonal neuropathy 1
  • p.Gly279= Single submitter giant axonal neuropathy 1
  • p.Gly332= Single submitter giant axonal neuropathy 1
  • p.Gly374= Single submitter giant axonal neuropathy 1
  • p.Gly380= Single submitter giant axonal neuropathy 1
  • p.Gly569= Single submitter giant axonal neuropathy 1
  • p.Gly68= Single submitter giant axonal neuropathy 1
  • p.Gly77= Single submitter giant axonal neuropathy 1
  • p.Gly93= Single submitter giant axonal neuropathy 1
  • p.His150= Single submitter giant axonal neuropathy 1
  • p.His160= Single submitter giant axonal neuropathy 1
  • p.His205= Single submitter giant axonal neuropathy 1
  • p.His213= Single submitter giant axonal neuropathy 1
  • p.Ile135= Single submitter giant axonal neuropathy 1
  • p.Ile251= Single submitter giant axonal neuropathy 1
  • p.Ile307= Single submitter giant axonal neuropathy 1
  • p.Ile41= Single submitter giant axonal neuropathy 1
  • p.Ile47= Single submitter giant axonal neuropathy 1
  • p.Leu111= Single submitter giant axonal neuropathy 1
  • p.Leu112= Single submitter
  • p.Leu125= Single submitter giant axonal neuropathy 1
  • p.Leu142= Single submitter giant axonal neuropathy 1
  • p.Leu173= Single submitter giant axonal neuropathy 1
  • p.Leu20= Single submitter giant axonal neuropathy 1
  • p.Leu253= Single submitter giant axonal neuropathy 1
  • p.Leu298= Single submitter giant axonal neuropathy 1
  • p.Leu312= Single submitter giant axonal neuropathy 1
  • p.Leu328= Single submitter giant axonal neuropathy 1
  • p.Leu34= Single submitter giant axonal neuropathy 1
  • p.Leu36= Single submitter giant axonal neuropathy 1
  • p.Leu470= Single submitter giant axonal neuropathy 1
  • p.Leu48= Single submitter giant axonal neuropathy 1
  • p.Leu560= Single submitter giant axonal neuropathy 1
  • p.Leu583= Single submitter giant axonal neuropathy 1
  • p.Lys186= Single submitter giant axonal neuropathy 1
  • p.Lys346= Single submitter giant axonal neuropathy 1
  • p.Lys403= Single submitter giant axonal neuropathy 1
  • p.Lys420= Single submitter giant axonal neuropathy 1
  • p.Lys45= Single submitter giant axonal neuropathy 1
  • p.Lys65= Single submitter giant axonal neuropathy 1
  • p.Lys72= Single submitter giant axonal neuropathy 1
  • p.Phe329= Single submitter giant axonal neuropathy 1
  • p.Phe459= Single submitter giant axonal neuropathy 1
  • p.Pro252= Single submitter giant axonal neuropathy 1
  • p.Pro256= Single submitter giant axonal neuropathy 1
  • p.Pro297= Single submitter giant axonal neuropathy 1
  • p.Pro311= Single submitter giant axonal neuropathy 1
  • p.Pro358= Single submitter giant axonal neuropathy 1
  • p.Pro443= Single submitter giant axonal neuropathy 1
  • p.Pro524= Single submitter giant axonal neuropathy 1
  • p.Pro562= Single submitter giant axonal neuropathy 1
  • p.Ser21= Single submitter giant axonal neuropathy 1
  • p.Ser229= Single submitter giant axonal neuropathy 1
  • p.Ser390= Single submitter giant axonal neuropathy 1
  • p.Ser430= Single submitter giant axonal neuropathy 1
  • p.Ser492= Single submitter giant axonal neuropathy 1
  • p.Ser516= Single submitter giant axonal neuropathy 1
  • p.Ser550= Single submitter giant axonal neuropathy 1
  • p.Ser563= Single submitter giant axonal neuropathy 1
  • p.Ser596= Single submitter giant axonal neuropathy 1
  • p.Ter598= Single submitter giant axonal neuropathy 1
  • p.Thr119= Single submitter giant axonal neuropathy 1
  • p.Thr167= Single submitter giant axonal neuropathy 1
  • p.Thr277= Single submitter giant axonal neuropathy 1
  • p.Thr340= Single submitter giant axonal neuropathy 1
  • p.Thr353= Single submitter giant axonal neuropathy 1
  • p.Thr445= Single submitter giant axonal neuropathy 1
  • p.Thr539= Single submitter giant axonal neuropathy 1
  • p.Tyr151= Single submitter giant axonal neuropathy 1
  • p.Tyr271= Single submitter giant axonal neuropathy 1
  • p.Tyr416= Single submitter giant axonal neuropathy 1
  • p.Tyr424= Single submitter giant axonal neuropathy 1
  • p.Tyr520= Single submitter giant axonal neuropathy 1
  • p.Tyr54= Single submitter giant axonal neuropathy 1
  • p.Tyr541= Single submitter giant axonal neuropathy 1
  • p.Tyr543= Single submitter giant axonal neuropathy 1
  • p.Val149= Single submitter giant axonal neuropathy 1
  • p.Val241= Single submitter giant axonal neuropathy 1
  • p.Val245= Single submitter giant axonal neuropathy 1
  • p.Val276= Single submitter giant axonal neuropathy 1
  • p.Val330= Single submitter giant axonal neuropathy 1
  • p.Val476= Single submitter giant axonal neuropathy 1
  • p.Val82= Single submitter giant axonal neuropathy 1
  • p.Val438= No assertion criteria GAN-related disorder

Uncertain significance 444

Showing the top 300 by review status; the full set is in the sitemap.