GFI1 — 780 ClinVar variants

All ClinVar germline GFI1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 444 flagged for review →

1 Pathogenic · 17 Conflicting · 8 Benign · 27 Benign/Likely benign · 260 Likely benign · 467 Uncertain significance

Full GFI1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 444

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 11

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 379

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 379

Predictors split 54

The independent predictors disagree with each other — read with care.

All GFI1 variants

Pathogenic 1

Conflicting classifications of pathogenicity 17

  • c.299-12G>C Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[25] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[26] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Ala187Ser Single submitter nonimmune chronic idiopathic neutropenia of adults ⚠
  • p.Ala191Val Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Arg140Gln Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Arg37Gly Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Arg67_Asp73dup Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Arg67Lys Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Asp313Gly Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Gly180Arg Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Ile258Val Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Lys403Arg Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Met105Val Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Ser78Thr Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Thr246Ala Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠
  • p.Thr417Met Single submitter neutropenia, severe congenital, 2, autosomal dominant ⚠

Benign 8

Benign/Likely benign 27

  • c.115+10_115+29del Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.786+11C>A Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[12] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[13] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[14] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[15] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[16] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[17] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[19] Multiple submitters nonimmune chronic idiopathic neutropenia of adults
  • c.925-40CT[20] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[21] Multiple submitters nonimmune chronic idiopathic neutropenia of adults
  • c.925-40CT[22] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[23] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[24] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[27] Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.-14A>C Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Arg413= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Arg415= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Glu240Gln Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Gly196= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Phe264= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Phe349= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Phe396= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro161= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro21= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser36Asn Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser56= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant

Likely benign 260

  • c.1091-18C>A Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.116-14C>T Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.924+14G>A Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.925-7_925-6insTCTCTCTCTA Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.-7G>A Multiple submitters
  • p.Ala112= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ala158= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ala166= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ala174= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ala177= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ala304= Multiple submitters
  • p.Ala47= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ala70= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Arg172= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Arg19= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Arg225= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Arg28His Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Asp202= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Asp88= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Cys142= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Cys314= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Cys373= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Cys398= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Gln343= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Glu111= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Gly148= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Gly176= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Gly198= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Gly201= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.His13= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.His268= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.His414= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.His419= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ile316= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu151= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu199= Multiple submitters
  • p.Leu244= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu270= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu29= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu331= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu61= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Lys10= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Lys11= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro107= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro107Ala Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro116= Multiple submitters
  • p.Pro121= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro159= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro223= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro23= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro33= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro92= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser101= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser130= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser186= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser20= Multiple submitters
  • p.Ser241= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser36= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser84= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser94= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Thr192= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Thr215= Multiple submitters
  • p.Thr417= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Tyr222= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Tyr344= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Val274= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • p.Val305= Multiple submitters neutropenia, severe congenital, 2, autosomal dominant
  • c.1090+14G>C Single submitter
  • c.1090+8A>T Single submitter
  • c.1091-12C>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.1091-15C>A Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.115+16G>C Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.115+17G>A Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.115+8G>A Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.116-15G>C Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.298+12C>G Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.298+19C>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.298+20C>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.298+9C>G Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.299-19T>C Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.299-8C>T Single submitter
  • c.786+12G>A Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.786+12G>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.786+9C>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.787-17G>C Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.787-5C>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+11G>A Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+13C>A Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+13C>G Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+13C>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+14G>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+15del Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+17C>G Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+18C>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+8del Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+9G>A Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+9G>C Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.924+9G>T Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[11] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[28] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[29] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[30] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[31] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[32] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[34] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-40CT[8] Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-7_925-6insTCTCTT Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.925-9_925-8insTCTCTCTA Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • c.-100+686C>A Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Ala12= Single submitter
  • p.Ala128= Single submitter
  • p.Ala149= Single submitter
  • p.Ala165= Single submitter
  • p.Ala179= Single submitter
  • p.Ala187= Single submitter
  • p.Ala189= Single submitter
  • p.Ala193= Single submitter
  • p.Ala208= Single submitter
  • p.Ala217= Single submitter
  • p.Ala218= Single submitter
  • p.Ala231= Single submitter
  • p.Ala235= Single submitter
  • p.Ala285= Single submitter
  • p.Ala296= Single submitter
  • p.Ala376= Single submitter
  • p.Ala49= Single submitter
  • p.Ala68= Single submitter
  • p.Ala97Val Single submitter
  • p.Arg133= Single submitter
  • p.Arg147= Single submitter
  • p.Arg213= Single submitter
  • p.Arg276= Single submitter
  • p.Arg28= Single submitter
  • p.Arg282= Single submitter
  • p.Arg3= Single submitter
  • p.Arg310= Single submitter
  • p.Arg323= Single submitter
  • p.Arg348= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Arg82= Single submitter
  • p.Arg91= Single submitter
  • p.Asn31= Single submitter
  • p.Asp336= Single submitter
  • p.Asp354= Single submitter
  • p.Asp39= Single submitter
  • p.Asp73= Single submitter
  • p.Cys106= Single submitter
  • p.Cys185= Single submitter
  • p.Cys260= Single submitter
  • p.Cys286= Single submitter
  • p.Cys289= Single submitter
  • p.Cys317= Single submitter
  • p.Gln301= Single submitter
  • p.Gln371= Single submitter
  • p.Glu146= Single submitter
  • p.Glu242= Single submitter
  • p.Glu271= Single submitter
  • p.Glu300= Single submitter
  • p.Glu365= Single submitter
  • p.Gly143Ala Single submitter
  • p.Gly152= Single submitter
  • p.Gly175= Single submitter
  • p.Gly178= Single submitter
  • p.Gly183= Single submitter
  • p.Gly194= Single submitter
  • p.Gly219= Single submitter
  • p.Gly22= Single submitter
  • p.Gly228= Single submitter
  • p.Gly234= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Gly236= Single submitter
  • p.Gly252= Single submitter
  • p.Gly253= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Gly269= Single submitter
  • p.Gly280= Single submitter
  • p.Gly290= Single submitter
  • p.Gly346= Single submitter
  • p.Gly364= Single submitter
  • p.Gly420= Single submitter
  • p.His16= Single submitter
  • p.His163= Single submitter
  • p.His278= Single submitter
  • p.His302= Single submitter
  • p.His358= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.His368= Single submitter
  • p.His386= Single submitter
  • p.His390= Single submitter
  • p.Ile258= Single submitter
  • p.Ile361= Single submitter
  • p.Leu109= Single submitter
  • p.Leu117= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu132= Single submitter
  • p.Leu153= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu167= Single submitter
  • p.Leu197= Single submitter
  • p.Leu210= Single submitter
  • p.Leu220= Single submitter
  • p.Leu221= Single submitter
  • p.Leu229= Single submitter
  • p.Leu243= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu248= Single submitter
  • p.Leu249= Single submitter
  • p.Leu250= Single submitter
  • p.Leu27= Single submitter
  • p.Leu299= Single submitter
  • p.Leu327= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Leu383= Single submitter
  • p.Leu6= Single submitter
  • p.Lys103= Single submitter
  • p.Lys120= Single submitter
  • p.Lys171= Single submitter
  • p.Lys171Glu Single submitter
  • p.Lys315= Single submitter
  • p.Lys322= Single submitter
  • p.Lys357= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Lys366= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Phe154= Single submitter
  • p.Phe284= Single submitter
  • p.Phe293= Single submitter
  • p.Phe393= Single submitter
  • p.Phe405= Single submitter
  • p.Phe86= Single submitter
  • p.Phe89= Single submitter
  • p.Pro141= Single submitter
  • p.Pro157= Single submitter
  • p.Pro164= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro170= Single submitter
  • p.Pro182= Single submitter
  • p.Pro195= Single submitter
  • p.Pro267= Single submitter
  • p.Pro283= Single submitter
  • p.Pro339= Single submitter
  • p.Pro341= Single submitter
  • p.Pro51= Single submitter
  • p.Pro57= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Pro65= Single submitter
  • p.Ser104= Single submitter
  • p.Ser108= Single submitter
  • p.Ser123= Single submitter
  • p.Ser14= Single submitter
  • p.Ser184= Single submitter
  • p.Ser184Gly Single submitter
  • p.Ser205= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Ser26= Single submitter
  • p.Ser277= Single submitter
  • p.Ser325= Single submitter
  • p.Ser4= Single submitter
  • p.Ser69= Single submitter
  • p.Ser71= Single submitter
  • p.Ser83= Single submitter
  • p.Ser96= Single submitter
  • p.Thr246= Single submitter
  • p.Thr281= Single submitter
  • p.Thr41= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Thr62= Single submitter
  • p.Tyr168= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Tyr200= Single submitter
  • p.Tyr25= Single submitter
  • p.Val237= Single submitter
  • p.Val239= Single submitter neutropenia, severe congenital, 2, autosomal dominant
  • p.Val32= Single submitter
  • p.Val409= Single submitter

Uncertain significance 467

Showing the top 300 by review status; the full set is in the sitemap.