GLDC — 2431 ClinVar variants

All ClinVar germline GLDC variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 719 flagged for review →

178 Pathogenic · 68 Pathogenic/Likely pathogenic · 218 Likely pathogenic · 100 Conflicting · 95 Benign · 26 Benign/Likely benign · 1017 Likely benign · 729 Uncertain significance

Full GLDC gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 719

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 57

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 449

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 449

Predictors split 202

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 202

All GLDC variants

Pathogenic 178

Pathogenic/Likely pathogenic 68

  • c.1401+1G>A Multiple submitters Inborn genetic diseases
  • c.2203-2A>G Multiple submitters glycine encephalopathy 1
  • c.2315+2T>A Multiple submitters glycine encephalopathy
  • c.2315+2T>G Multiple submitters glycine encephalopathy 1
  • c.2919+5G>T Multiple submitters glycine encephalopathy
  • c.334+1G>T Multiple submitters glycine encephalopathy 1
  • p.Ala237fs Multiple submitters glycine encephalopathy
  • p.Ala389Val Multiple submitters GLDC-related disorders
  • p.Ala794fs Multiple submitters glycine encephalopathy
  • p.Ala833Val Multiple submitters glycine encephalopathy
  • p.Arg362Cys Multiple submitters glycine encephalopathy
  • p.Arg373Gln Multiple submitters glycine encephalopathy
  • p.Arg373Trp Multiple submitters Inborn genetic diseases
  • p.Arg424Ter Multiple submitters glycine encephalopathy 1
  • p.Arg461Trp Multiple submitters GLDC-related disorders
  • p.Arg515Ser Multiple submitters glycine encephalopathy 1
  • p.Arg536Gln Multiple submitters glycine encephalopathy 1
  • p.Arg536Trp Multiple submitters glycine encephalopathy 1
  • p.Arg630Pro Multiple submitters glycine encephalopathy
  • p.Arg739His Multiple submitters GLDC-related disorders
  • p.Arg988Gln Multiple submitters GLDC-related disorders
  • p.Arg988Trp Multiple submitters glycine encephalopathy 1
  • p.Asn150Lys Multiple submitters glycine encephalopathy
  • p.Cys382Tyr Multiple submitters glycine encephalopathy 1
  • p.Cys644Tyr Multiple submitters glycine encephalopathy
  • p.Gln160Ter Multiple submitters glycine encephalopathy
  • p.Gln265fs Multiple submitters glycine encephalopathy
  • p.Gln2Ter Multiple submitters glycine encephalopathy
  • p.Gln430Ter Multiple submitters glycine encephalopathy
  • p.Gln610Ter Multiple submitters glycine encephalopathy
  • p.Gln723Ter Multiple submitters glycine encephalopathy
  • p.Gln828fs Multiple submitters glycine encephalopathy
  • p.Gln828Ter Multiple submitters glycine encephalopathy
  • p.Glu108Ter Multiple submitters glycine encephalopathy
  • p.Glu167Ter Multiple submitters GLDC-related disorders
  • p.Glu205fs Multiple submitters GLDC-related disorders
  • p.Glu877_Val879del Multiple submitters glycine encephalopathy
  • p.Glu877Ter Multiple submitters glycine encephalopathy
  • p.Gly618Arg Multiple submitters glycine encephalopathy
  • p.Gly860Arg Multiple submitters glycine encephalopathy
  • p.His651Arg Multiple submitters glycine encephalopathy
  • p.His775Arg Multiple submitters GLDC-related disorders
  • p.Ile810fs Multiple submitters glycine encephalopathy
  • p.Leu82Ser Multiple submitters glycine encephalopathy 1
  • p.Leu844Ter Multiple submitters glycine encephalopathy 1
  • p.Leu885Pro Multiple submitters glycine encephalopathy
  • p.Lys439Asn Multiple submitters glycine encephalopathy ⚠
  • p.Lys824Ter Multiple submitters glycine encephalopathy 1
  • p.Lys872Ter Multiple submitters glycine encephalopathy
  • p.Met560Val Multiple submitters glycine encephalopathy
  • p.Phe756del Multiple submitters glycine encephalopathy 1
  • p.Pro267Ala Multiple submitters glycine encephalopathy 1
  • p.Pro267Leu Multiple submitters glycine encephalopathy
  • p.Pro304Leu Multiple submitters glycine encephalopathy 1
  • p.Pro570fs Multiple submitters glycine encephalopathy 1
  • p.Pro581Arg Multiple submitters GLDC-related disorders
  • p.Pro893Leu Multiple submitters glycine encephalopathy
  • p.Ser142Ter Multiple submitters glycine encephalopathy
  • p.Ser551Ile Multiple submitters glycine encephalopathy 1
  • p.Ser564Ile Multiple submitters GLDC-related disorders
  • p.Thr830Met Multiple submitters glycine encephalopathy
  • p.Thr894Ala Multiple submitters glycine encephalopathy
  • p.Trp805Ter Multiple submitters GLDC-related disorder
  • p.Trp960Ter Multiple submitters glycine encephalopathy
  • p.Tyr161Cys Multiple submitters glycine encephalopathy
  • p.Tyr398Ter Multiple submitters glycine encephalopathy 1
  • p.Val905Gly Multiple submitters glycine encephalopathy 1
  • p.Leu10fs No assertion criteria

Likely pathogenic 218

Conflicting classifications of pathogenicity 100

Benign 95

Benign/Likely benign 26

Likely benign 1017

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 729

Showing the top 300 by review status; the full set is in the sitemap.