GPAA1 — 621 ClinVar variants

All ClinVar germline GPAA1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 242 flagged for review →

22 Pathogenic · 4 Pathogenic/Likely pathogenic · 22 Likely pathogenic · 10 Conflicting · 8 Benign · 11 Benign/Likely benign · 275 Likely benign · 269 Uncertain significance

Full GPAA1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 242

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 188

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 188

Predictors split 48

The independent predictors disagree with each other — read with care.

All GPAA1 variants

Pathogenic 22

Pathogenic/Likely pathogenic 4

  • p.Arg15fs Multiple submitters glycosylphosphatidylinositol biosynthesis defect 15
  • p.Arg215Ter Multiple submitters glycosylphosphatidylinositol biosynthesis defect 15
  • p.Ser154fs Multiple submitters
  • p.Ser419Ter Multiple submitters GPAA1-related disorder

Likely pathogenic 22

Conflicting classifications of pathogenicity 10

  • c.1622+3A>G Single submitter glycosylphosphatidylinositol biosynthesis defect 15
  • c.75-5C>T Single submitter Inborn genetic diseases
  • p.Ala316Val Single submitter ⚠
  • p.Arg296Gln Single submitter Inborn genetic diseases ⚠
  • p.Arg493fs Single submitter glycosylphosphatidylinositol biosynthesis defect 15
  • p.Glu240Gly Single submitter glycosylphosphatidylinositol biosynthesis defect 15 ⚠
  • p.Leu290Pro Single submitter glycosylphosphatidylinositol biosynthesis defect 15 ⚠
  • p.Lys621Asn Single submitter glycosylphosphatidylinositol biosynthesis defect 15 ⚠
  • p.Met50Lys Single submitter glycosylphosphatidylinositol biosynthesis defect 15 ⚠
  • p.Val181Ile Single submitter glycosylphosphatidylinositol biosynthesis defect 15 ⚠

Benign 8

Benign/Likely benign 11

Likely benign 275

Uncertain significance 269