GTF2E2 — 178 ClinVar variants
All ClinVar germline GTF2E2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 64 flagged for review →
2 Pathogenic · 1 Conflicting · 15 Benign · 2 Benign/Likely benign · 84 Likely benign · 74 Uncertain significance
Full GTF2E2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 64
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 46
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
GTF2E2 p.Ala138Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.Ala278Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.Gly47Ala
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.Lys197Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.Phe62Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.Thr94Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.Val145Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
- GTF2E2 p.Arg194His Uncertain significance Single submitter
- GTF2E2 p.Arg268Gln Uncertain significance Single submitter
- GTF2E2 p.Arg269His Uncertain significance Single submitter
-
GTF2E2 p.Arg88Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Arg91Gln Uncertain significance Single submitter
- GTF2E2 p.Asn126Ser Uncertain significance Single submitter
-
GTF2E2 p.Asn144Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Asn177Ser Uncertain significance Single submitter
-
GTF2E2 p.Asp100Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Asp134Asn Uncertain significance Single submitter
- GTF2E2 p.Asp93Asn Uncertain significance Single submitter
- GTF2E2 p.Gly162Arg Uncertain significance Single submitter
- GTF2E2 p.Gly46Ala Uncertain significance Single submitter
-
GTF2E2 p.His158Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Ile256Val Uncertain significance Single submitter
-
GTF2E2 p.Leu152His
Uncertain significance
Single submitter
Inborn genetic diseases
-
GTF2E2 p.Leu64Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Lys183Met Uncertain significance Single submitter
-
GTF2E2 p.Lys197Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Lys282Arg Uncertain significance Single submitter
-
GTF2E2 p.Lys37Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
GTF2E2 p.Met245Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
GTF2E2 p.Phe202Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Pro20Ala Uncertain significance Single submitter
-
GTF2E2 p.Pro250Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
GTF2E2 p.Pro255Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Ser178Phe Uncertain significance Single submitter
-
GTF2E2 p.Ser207Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Ser227Ala Uncertain significance Single submitter
- GTF2E2 p.Ser34Leu Uncertain significance Single submitter
-
GTF2E2 p.Ser35Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Ser35Thr Uncertain significance Single submitter
- GTF2E2 p.Ser48Leu Uncertain significance Single submitter
- GTF2E2 p.Ser48Pro Uncertain significance Single submitter
-
GTF2E2 p.Ser68Pro
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Thr121Ala Uncertain significance Single submitter
- GTF2E2 p.Val132Ile Uncertain significance Single submitter
- GTF2E2 p.Val225Ile Uncertain significance Single submitter
- GTF2E2 p.Val43Leu Uncertain significance Single submitter
Predictors split 17
The independent predictors disagree with each other — read with care.
-
GTF2E2 p.Arg25Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.Arg269Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.His158Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
GTF2E2 p.Ser289Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
- GTF2E2 p.Arg25His Uncertain significance Single submitter
-
GTF2E2 p.Asn204Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
GTF2E2 p.Asn63Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Glu230Lys Uncertain significance Single submitter
-
GTF2E2 p.His273Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
GTF2E2 p.His89Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- GTF2E2 p.Leu190Val Uncertain significance Single submitter
- GTF2E2 p.Lys232Thr Uncertain significance Single submitter
- GTF2E2 p.Lys37Glu Uncertain significance Single submitter
- GTF2E2 p.Lys42Gln Uncertain significance Single submitter
- GTF2E2 p.Pro176Ser Uncertain significance Single submitter
-
GTF2E2 p.Ser51Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
GTF2E2 p.Ala150Pro
Pathogenic
No assertion criteria
trichothiodystrophy 6, nonphotosensitive
All GTF2E2 variants
Pathogenic 2
- p.Asp187Tyr Single submitter trichothiodystrophy 6, nonphotosensitive
- p.Ala150Pro No assertion criteria trichothiodystrophy 6, nonphotosensitive ⚠
Conflicting classifications of pathogenicity 1
- p.Ile133Thr Single submitter ⚠
Benign 15
- c.549+11T>G Multiple submitters trichothiodystrophy 6, nonphotosensitive
- c.258+12del Single submitter
- c.259-335del Single submitter
- c.366+10T>G Single submitter
- c.367-108A>G Single submitter
- c.367-120T>C Single submitter
- c.549+102A>G Single submitter
- c.550-125A>T Single submitter
- c.550-53del Single submitter
- c.550-66dup Single submitter
- c.759+159G>A Single submitter
- c.760-225G>A Single submitter
- c.760-298G>A Single submitter
- c.-4-181G>A Single submitter
- p.Ala66= Single submitter
Benign/Likely benign 2
- c.549+5T>C Multiple submitters
- p.Ser48= Multiple submitters
Likely benign 84
- c.258+13C>T Multiple submitters
- p.Gly60= Multiple submitters
- p.His89= Multiple submitters
- p.Lys183Arg Multiple submitters
- p.Lys74= Multiple submitters
- p.Ser71= Multiple submitters
- c.166+12T>C Single submitter
- c.166+13G>C Single submitter
- c.166+16T>G Single submitter
- c.167-15G>T Single submitter
- c.167-4G>A Single submitter
- c.167-8A>T Single submitter
- c.258+11T>C Single submitter
- c.258+13C>G Single submitter
- c.258+16A>G Single submitter
- c.258+17G>C Single submitter
- c.258+18A>C Single submitter
- c.258+7A>G Single submitter
- c.258+8C>G Single submitter
- c.259-17A>G Single submitter
- c.366+11A>C Single submitter
- c.366+13T>C Single submitter
- c.366+15G>A Single submitter
- c.366+16A>G Single submitter
- c.366+20T>C Single submitter
- c.367-11C>A Single submitter
- c.367-13A>G Single submitter
- c.549+10_549+11delinsTG Single submitter
- c.549+14T>C Single submitter
- c.549+15C>A Single submitter
- c.549+8C>G Single submitter
- c.550-10T>C Single submitter
- c.550-11C>A Single submitter
- c.550-9_550-6del Single submitter
- c.643+18A>G Single submitter
- c.644-14T>C Single submitter
- c.644-16T>G Single submitter
- c.759+16C>T Single submitter
- c.759+8A>G Single submitter
- c.760-12C>T Single submitter
- c.760-19T>G Single submitter
- c.760-20G>T Single submitter
- p.Ala150= Single submitter
- p.Ala79= Single submitter
- p.Arg88= Single submitter
- p.Asn144= Single submitter
- p.Asn274= Single submitter
- p.Asp159= Single submitter
- p.Asp187= Single submitter
- p.Asp226= Single submitter
- p.Asp229= Single submitter
- p.Asp283= Single submitter
- p.Gln117= Single submitter
- p.Gln157= Single submitter
- p.Glu10= Single submitter
- p.Glu235= Single submitter
- p.His45= Single submitter
- p.Leu11= Single submitter
- p.Leu124= Single submitter
- p.Leu151= Single submitter
- p.Leu154= Single submitter
- p.Leu175= Single submitter
- p.Leu190= Single submitter
- p.Leu219= Single submitter
- p.Leu281= Single submitter
- p.Leu5= Single submitter
- p.Leu67= Single submitter
- p.Leu78= Single submitter
- p.Lys13Arg Single submitter Inborn genetic diseases
- p.Lys140= Single submitter
- p.Lys198= Single submitter
- p.Pro176= Single submitter
- p.Pro195= Single submitter
- p.Pro250= Single submitter
- p.Pro96= Single submitter
- p.Ser34= Single submitter
- p.Ser35= Single submitter
- p.Ser68= Single submitter
- p.Thr106= Single submitter
- p.Thr94= Single submitter
- p.Tyr84= Single submitter
- p.Val125= Single submitter
- p.Val182= Single submitter
- p.Val21= Single submitter
Uncertain significance 74
- p.Ala138Thr Multiple submitters Inborn genetic diseases ⚠
- p.Ala278Ser Multiple submitters Inborn genetic diseases ⚠
- p.Arg25Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg269Cys Multiple submitters Inborn genetic diseases ⚠
- p.Gly47Ala Multiple submitters Inborn genetic diseases ⚠
- p.His158Arg Multiple submitters Inborn genetic diseases ⚠
- p.Lys197Arg Multiple submitters Inborn genetic diseases ⚠
- p.Phe62Ile Multiple submitters Inborn genetic diseases ⚠
- p.Ser289Cys Multiple submitters Inborn genetic diseases ⚠
- p.Thr94Met Multiple submitters Inborn genetic diseases ⚠
- p.Val145Met Multiple submitters Inborn genetic diseases ⚠
- c.367-18A>G Single submitter
- c.549+4A>G Single submitter trichothiodystrophy 6, nonphotosensitive
- c.549+6C>T Single submitter
- c.759+2T>C Single submitter
- c.759+4C>T Single submitter
- p.Arg161Ter Single submitter
- p.Arg194His Single submitter ⚠
- p.Arg25His Single submitter ⚠
- p.Arg268Gln Single submitter ⚠
- p.Arg269His Single submitter ⚠
- p.Arg88Trp Single submitter Inborn genetic diseases ⚠
- p.Arg91Gln Single submitter ⚠
- p.Asn126Ser Single submitter ⚠
- p.Asn144Asp Single submitter Inborn genetic diseases ⚠
- p.Asn177Ser Single submitter ⚠
- p.Asn204Ser Single submitter Inborn genetic diseases ⚠
- p.Asn63Lys Single submitter Inborn genetic diseases ⚠
- p.Asp100Tyr Single submitter Inborn genetic diseases ⚠
- p.Asp134Asn Single submitter ⚠
- p.Asp93Asn Single submitter ⚠
- p.Glu230Lys Single submitter ⚠
- p.Gly135Arg Single submitter
- p.Gly162Arg Single submitter ⚠
- p.Gly165del Single submitter
- p.Gly46Ala Single submitter ⚠
- p.His158Tyr Single submitter Inborn genetic diseases ⚠
- p.His273Tyr Single submitter Inborn genetic diseases ⚠
- p.His89Arg Single submitter Inborn genetic diseases ⚠
- p.Ile256Val Single submitter ⚠
- p.Leu152His Single submitter Inborn genetic diseases ⚠
- p.Leu190Val Single submitter ⚠
- p.Leu64Trp Single submitter Inborn genetic diseases ⚠
- p.Lys183Met Single submitter ⚠
- p.Lys197Glu Single submitter Inborn genetic diseases ⚠
- p.Lys232Thr Single submitter ⚠
- p.Lys282Arg Single submitter ⚠
- p.Lys37Arg Single submitter Inborn genetic diseases ⚠
- p.Lys37Glu Single submitter ⚠
- p.Lys40del Single submitter
- p.Lys42Gln Single submitter ⚠
- p.Met245Leu Single submitter Inborn genetic diseases ⚠
- p.Phe202Leu Single submitter Inborn genetic diseases ⚠
- p.Pro176Ser Single submitter ⚠
- p.Pro20Ala Single submitter ⚠
- p.Pro250Arg Single submitter
- p.Pro250Leu Single submitter Inborn genetic diseases ⚠
- p.Pro255Leu Single submitter Inborn genetic diseases ⚠
- p.Ser178Phe Single submitter ⚠
- p.Ser207Gly Single submitter Inborn genetic diseases ⚠
- p.Ser227Ala Single submitter ⚠
- p.Ser34Leu Single submitter ⚠
- p.Ser35Leu Single submitter Inborn genetic diseases ⚠
- p.Ser35Thr Single submitter ⚠
- p.Ser36del Single submitter
- p.Ser48Leu Single submitter ⚠
- p.Ser48Pro Single submitter ⚠
- p.Ser49Ter Single submitter
- p.Ser51Cys Single submitter Inborn genetic diseases ⚠
- p.Ser68Pro Single submitter Inborn genetic diseases ⚠
- p.Thr121Ala Single submitter ⚠
- p.Val132Ile Single submitter ⚠
- p.Val225Ile Single submitter ⚠
- p.Val43Leu Single submitter ⚠