GUCY2D — 1683 ClinVar variants

All ClinVar germline GUCY2D variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 669 flagged for review →

133 Pathogenic · 22 Pathogenic/Likely pathogenic · 97 Likely pathogenic · 53 Conflicting · 29 Benign · 12 Benign/Likely benign · 616 Likely benign · 721 Uncertain significance

Full GUCY2D gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 669

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 5

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 28

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 483

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 483

Predictors split 153

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 153

All GUCY2D variants

Pathogenic 133

  • c.1956+1G>A Expert panel GUCY2D-related recessive retinopathy
  • c.2944+1del Expert panel GUCY2D-related recessive retinopathy
  • c.3224+1G>C Expert panel GUCY2D-related recessive retinopathy
  • c.722-1G>T Expert panel GUCY2D-related recessive retinopathy
  • c.-127_1566+2del Expert panel GUCY2D-related recessive retinopathy
  • p.Ala76fs Expert panel GUCY2D-related recessive retinopathy
  • p.Arg1091Ter Expert panel GUCY2D-related recessive retinopathy
  • p.Arg31fs Expert panel GUCY2D-related recessive retinopathy
  • p.Arg521Ter Expert panel GUCY2D-related recessive retinopathy
  • p.Arg588Trp Expert panel GUCY2D-related recessive retinopathy ⚠
  • p.Arg768Gln Expert panel GUCY2D-related recessive retinopathy
  • p.Arg768Trp Expert panel GUCY2D-related recessive retinopathy
  • p.Gln545Ter Expert panel GUCY2D-related recessive retinopathy
  • p.Gln878fs Expert panel GUCY2D-related recessive retinopathy
  • p.Ile243fs Expert panel GUCY2D-related recessive retinopathy
  • p.Lys866fs Expert panel GUCY2D-related recessive retinopathy
  • p.Met1Ile Expert panel GUCY2D-related recessive retinopathy
  • p.Phe415fs Expert panel GUCY2D-related recessive retinopathy
  • p.Phe565Ser Expert panel GUCY2D-related recessive retinopathy
  • p.Pro130Leufs Expert panel GUCY2D-related recessive retinopathy
  • p.Ser448Ter Expert panel GUCY2D-related recessive retinopathy
  • p.Tyr922Ter Expert panel GUCY2D-related recessive retinopathy
  • c.1957-2A>G Multiple submitters cone-rod dystrophy 6
  • p.Arg660Ter Multiple submitters inherited retinal dystrophy
  • p.Arg795Trp Multiple submitters Leber congenital amaurosis 1
  • p.Arg838Pro Multiple submitters cone-rod dystrophy 6
  • p.Asn591fs Multiple submitters cone-rod dystrophy 6
  • p.Gln191Ter Multiple submitters Leber congenital amaurosis 1
  • p.Gln585Ter Multiple submitters GUCY2D-related disorders
  • p.Gln826Ter Multiple submitters cone-rod dystrophy 6
  • p.Gln855Ter Multiple submitters cone-rod dystrophy 6
  • p.Gly1013Arg Multiple submitters cone-rod dystrophy 6
  • p.Ile916Thr Multiple submitters GUCY2D-related disorders ⚠
  • p.Leu59fs Multiple submitters cone-rod dystrophy 6
  • p.Lys232fs Multiple submitters Leber congenital amaurosis 1
  • p.Lys866Asn Multiple submitters cone-rod dystrophy 6
  • p.Met1Val Multiple submitters Leber congenital amaurosis 1
  • p.Pro873Arg Multiple submitters cone-rod dystrophy 6
  • p.Trp372Ter Multiple submitters GUCY2D-related disorders
  • p.Tyr283Ter Multiple submitters cone-rod dystrophy 6
  • p.Tyr882Ter Multiple submitters cone-rod dystrophy 6
  • c.2113+1G>A Single submitter Leber congenital amaurosis 1
  • c.2770-2A>G Single submitter cone-rod dystrophy 6
  • c.2943_2944+7del Single submitter Leber congenital amaurosis 1
  • c.2945-2A>C Single submitter cone-rod dystrophy 6
  • c.3139-1G>C Single submitter
  • p.Ala117fs Single submitter Leber congenital amaurosis 1
  • p.Ala162fs Single submitter cone-rod dystrophy 6
  • p.Ala189fs Single submitter cone-rod dystrophy 6
  • p.Ala49fs Single submitter cone-rod dystrophy 6
  • p.Ala609fs Single submitter cone-rod dystrophy 6
  • p.Ala710Val Single submitter cone-rod dystrophy 6
  • p.Arg1040fs Single submitter cone-rod dystrophy 6
  • p.Arg1040Ter Single submitter cone-rod dystrophy 6
  • p.Arg528Ter Single submitter cone-rod dystrophy 6
  • p.Arg6fs Single submitter Leber congenital amaurosis 1
  • p.Arg7Ter Single submitter Leber congenital amaurosis 1
  • p.Arg838Gly Single submitter Leber congenital amaurosis 1
  • p.Asn454fs Single submitter cone-rod dystrophy 6
  • p.Asp337fs Single submitter cone-rod dystrophy 6
  • p.Asp384fs Single submitter cone-rod dystrophy 6
  • p.Asp850fs Single submitter cone-rod dystrophy 6
  • p.Cys105Ter Single submitter Leber congenital amaurosis 1
  • p.Cys17Ter Single submitter Leber congenital amaurosis 1
  • p.Cys457Ter Single submitter Leber congenital amaurosis 1
  • p.Gln525Ter Single submitter Leber congenital amaurosis 1
  • p.Gln694Ter Single submitter Leber congenital amaurosis 1
  • p.Gln737Ter Single submitter cone-rod dystrophy 6
  • p.Gln758Ter Single submitter Leber congenital amaurosis 1
  • p.Gln775Ter Single submitter cone-rod dystrophy 6
  • p.Gln878Ter Single submitter cone-rod dystrophy 6
  • p.Glu103Val Single submitter Leber congenital amaurosis 1 ⚠
  • p.Glu261fs Single submitter cone-rod dystrophy 6
  • p.Glu363fs Single submitter cone-rod dystrophy 6
  • p.Glu793fs Single submitter Leber congenital amaurosis 1
  • p.Glu837fs Single submitter Leber congenital amaurosis 1
  • p.Gly1013Glu Single submitter Leber congenital amaurosis 1
  • p.Gly460fs Single submitter Leber congenital amaurosis 1
  • p.His314fs Single submitter cone-rod dystrophy 6
  • p.His800fs Single submitter cone-rod dystrophy 6
  • p.Leu1022Ter Single submitter cone-rod dystrophy 6
  • p.Leu309fs Single submitter cone-rod dystrophy 6
  • p.Leu478fs Single submitter Leber congenital amaurosis 1
  • p.Leu594fs Single submitter cone-rod dystrophy 6
  • p.Leu691fs Single submitter choroidal dystrophy, central areolar, 1
  • p.Leu911_Phe912insTer Single submitter Leber congenital amaurosis 1
  • p.Leu911fs Single submitter cone-rod dystrophy 6
  • p.Met1009Lys Single submitter Congenital blindness
  • p.Phe999fs Single submitter cone-rod dystrophy 6
  • p.Pro287fs Single submitter Leber congenital amaurosis 1
  • p.Pro575fs Single submitter Leber congenital amaurosis 1
  • p.Pro765fs Single submitter cone-rod dystrophy 6
  • p.Ser374fs Single submitter Leber congenital amaurosis 1
  • p.Ser762fs Single submitter Leber congenital amaurosis 1
  • p.Ser893fs Single submitter cone-rod dystrophy 6
  • p.Ser958fs Single submitter cone-rod dystrophy 6
  • p.Trp194Ter Single submitter Leber congenital amaurosis 1
  • p.Trp22Ter Single submitter Leber congenital amaurosis 1
  • p.Trp62Ter Single submitter cone-rod dystrophy 6
  • p.Tyr1035Ter Single submitter cone-rod dystrophy 6
  • p.Tyr595fs Single submitter cone-rod dystrophy 6
  • p.Tyr996Ter Single submitter Leber congenital amaurosis 1
  • p.Val1025fs Single submitter cone-rod dystrophy 6
  • p.Val148fs Single submitter cone-rod dystrophy 6
  • p.Val973fs Single submitter Leber congenital amaurosis 1
  • c.1378+1G>A No assertion criteria Leber congenital amaurosis 1
  • c.1566+2T>C No assertion criteria Leber congenital amaurosis 1
  • c.1957-1G>T No assertion criteria Leber congenital amaurosis 1
  • c.2114-27_2263+18del No assertion criteria Leber congenital amaurosis 1
  • c.2263+2T>C No assertion criteria Leber congenital amaurosis 1
  • c.2413-1G>C No assertion criteria Leber congenital amaurosis 1
  • c.2577-2A>C No assertion criteria Leber congenital amaurosis 1
  • c.2770-1G>C No assertion criteria Leber congenital amaurosis 1
  • c.2944+1G>T No assertion criteria inherited retinal dystrophy
  • p.Ala168fs No assertion criteria Leber congenital amaurosis 1
  • p.Ala726_Met736delinsVal No assertion criteria Leber congenital amaurosis 1
  • p.Arg208fs No assertion criteria Leber congenital amaurosis 1
  • p.Arg795Pro No assertion criteria inherited retinal dystrophy
  • p.Arg83Cys No assertion criteria night blindness, congenital stationary, type1i
  • p.Asp1071fs No assertion criteria Early-onset retinal dystrophy
  • p.Gln329Ter No assertion criteria inherited retinal dystrophy
  • p.Glu333Ter No assertion criteria Leber congenital amaurosis 1
  • p.Gly60fs No assertion criteria Leber congenital amaurosis 1
  • p.His1079fs No assertion criteria Early-onset retinal dystrophy
  • p.Ile1027fs No assertion criteria Leber congenital amaurosis 1
  • p.Ile949Thr No assertion criteria cone-rod dystrophy 6
  • p.Leu911Phe No assertion criteria night blindness, congenital stationary, type1i
  • p.Met1Lys No assertion criteria Leber congenital amaurosis 1
  • p.Pro1074fs No assertion criteria Leber congenital amaurosis 1
  • p.Thr511fs No assertion criteria Leber congenital amaurosis 1
  • p.Trp181Ter No assertion criteria Leber congenital amaurosis 1
  • p.Trp788Ter No assertion criteria inherited retinal dystrophy
  • p.Tyr258Ter No assertion criteria inherited retinal dystrophy

Pathogenic/Likely pathogenic 22

  • c.1566+1G>A Multiple submitters cone-rod dystrophy 6
  • c.1567-1G>C Multiple submitters cone-rod dystrophy 6
  • c.2576+1G>A Multiple submitters GUCY2D-related disorders
  • p.Arg838Cys Multiple submitters GUCY2D-related disorders
  • p.Arg838His Multiple submitters GUCY2D-related disorders
  • p.Arg838Ser Multiple submitters GUCY2D-related disorders
  • p.Asp728Asn Multiple submitters GUCY2D-related disorders
  • p.Cys105Tyr Multiple submitters GUCY2D-related disorders
  • p.Cys984Ter Multiple submitters Leber congenital amaurosis 1
  • p.Glu254Ter Multiple submitters cone-rod dystrophy 6
  • p.Glu754Ter Multiple submitters Leber congenital amaurosis 1
  • p.Glu779Ter Multiple submitters GUCY2D-related disorders
  • p.Glu841Ter Multiple submitters GUCY2D retinopathy
  • p.His305fs Multiple submitters Leber congenital amaurosis 1
  • p.His967fs Multiple submitters GUCY2D-related disorders
  • p.Leu276fs Multiple submitters Leber congenital amaurosis 1
  • p.Leu954Pro Multiple submitters Leber congenital amaurosis
  • p.Met1009Leu Multiple submitters Leber congenital amaurosis ⚠
  • p.Met1fs Multiple submitters Leber congenital amaurosis 1
  • p.Phe883fs Multiple submitters Leber congenital amaurosis 1
  • p.Pro764fs Multiple submitters cone-rod dystrophy 6
  • p.Trp150Ter Multiple submitters Leber congenital amaurosis 1

Likely pathogenic 97

  • c.3224+3G>T Expert panel GUCY2D-related recessive retinopathy
  • p.Ala946Thr Expert panel GUCY2D-related recessive retinopathy
  • p.Arg28fs Expert panel GUCY2D-related recessive retinopathy
  • p.Arg313Cys Expert panel GUCY2D-related recessive retinopathy ⚠
  • p.Arg666Trp Expert panel GUCY2D-related recessive retinopathy ⚠
  • p.Arg795Gln Expert panel GUCY2D-related recessive retinopathy
  • p.Arg976Leu Expert panel GUCY2D-related recessive retinopathy
  • p.Arg995Trp Expert panel GUCY2D-related recessive retinopathy
  • p.Glu103Lys Expert panel GUCY2D-related recessive retinopathy
  • p.His1019Pro Expert panel GUCY2D-related recessive retinopathy
  • p.His945Tyr Expert panel GUCY2D-related recessive retinopathy
  • p.Leu1028_Arg1029insIleLeu Expert panel GUCY2D-related recessive retinopathy
  • p.Pro711Leu Expert panel GUCY2D-related recessive retinopathy
  • p.Ser1007Ter Expert panel GUCY2D-related recessive retinopathy
  • p.Ser248Trp Expert panel GUCY2D-related recessive retinopathy
  • p.Thr280Arg Expert panel GUCY2D-related recessive retinopathy
  • p.Thr312Met Expert panel GUCY2D-related recessive retinopathy ⚠
  • p.Tyr351Cys Expert panel GUCY2D-related recessive retinopathy
  • p.Tyr922Cys Expert panel GUCY2D-related recessive retinopathy
  • p.Val242Gly Expert panel GUCY2D-related recessive retinopathy
  • p.Glu738del Multiple submitters Leber congenital amaurosis 1
  • p.Thr849Ala Multiple submitters GUCY2D-related disorders ⚠
  • c.1026+2T>C Single submitter Leber congenital amaurosis 1
  • c.1378+1G>T Single submitter Leber congenital amaurosis 1
  • c.1749+1G>A Single submitter Leber congenital amaurosis 1
  • c.1750-12_1752del Single submitter cone-rod dystrophy 6
  • c.1750-1G>A Single submitter Leber congenital amaurosis 1
  • c.1956+2T>A Single submitter Leber congenital amaurosis 1
  • c.2263+1G>A Single submitter cone-rod dystrophy 6
  • c.2263+1G>C Single submitter Leber congenital amaurosis
  • c.2264-1G>A Single submitter Leber congenital amaurosis 1
  • c.2412+2T>C Single submitter Leber congenital amaurosis 1
  • c.2413-2A>C Single submitter
  • c.2577-2A>G Single submitter Leber congenital amaurosis 1
  • c.2769+1G>A Single submitter cone-rod dystrophy 6
  • c.2770-34_2925del Single submitter cone-rod dystrophy 6
  • p.Ala604fs Single submitter
  • p.Arg944fs Single submitter GUCY2D-related disorders
  • p.Arg995Gln Single submitter Leber congenital amaurosis
  • p.Asp452Asn Single submitter Leber congenital amaurosis 1 ⚠
  • p.Gln191fs Single submitter Leber congenital amaurosis 1
  • p.Gln525fs Single submitter inherited retinal dystrophy
  • p.Glu228Ter Single submitter GUCY2D-related disorders
  • p.Glu712Val Single submitter Leber congenital amaurosis 1
  • p.Glu948Ter Single submitter night blindness, congenital stationary, type1i
  • p.Gly464fs Single submitter Leber congenital amaurosis 1
  • p.Gly542fs Single submitter Leber congenital amaurosis 1
  • p.Gly727Asp Single submitter Autosomal recessive optic atrophy
  • p.Gly978Ser Single submitter GUCY2D-related disorders
  • p.His658Tyr Single submitter cone-rod dystrophy 6
  • p.His664Asn Single submitter GUCY2D-related disorders
  • p.His664Pro Single submitter Leber congenital amaurosis
  • p.Leu139Pro Single submitter
  • p.Leu338fs Single submitter Leber congenital amaurosis 1
  • p.Leu404Pro Single submitter retinal disorder
  • p.Leu468fs Single submitter Leber congenital amaurosis 1
  • p.Leu646Pro Single submitter Leber congenital amaurosis 1
  • p.Leu842Pro Single submitter GUCY2D-related disorders
  • p.Lys846Asn Single submitter GUCY2D-related disorders
  • p.Met1Thr Single submitter inherited retinal dystrophy
  • p.Phe347fs Single submitter GUCY2D-related disorders
  • p.Phe482fs Single submitter GUCY2D-related disorders
  • p.Pro24fs Single submitter inherited retinal dystrophy
  • p.Ser448fs Single submitter Leber congenital amaurosis 1
  • p.Ser669Ter Single submitter Leber congenital amaurosis 1
  • p.Thr1043fs Single submitter Leber congenital amaurosis 1
  • p.Thr310Asn Single submitter Leber congenital amaurosis 1 ⚠
  • p.Thr839fs Single submitter Leber congenital amaurosis 1
  • p.Trp640Arg Single submitter Leber congenital amaurosis
  • p.Tyr827Ser Single submitter inherited retinal dystrophy
  • p.Tyr882Asn Single submitter GUCY2D-related disorders
  • p.Val187Gly Single submitter GUCY2D-related disorders
  • p.Val902Met Single submitter GUCY2D-related disorders
  • c.3043+5G>A No assertion criteria Leber congenital amaurosis 1
  • p.Ala226fs No assertion criteria Leber congenital amaurosis 1
  • p.Ala914Thr No assertion criteria inherited retinal dystrophy ⚠
  • p.Ala934Pro No assertion criteria Leber congenital amaurosis 1
  • p.Ala946Ser No assertion criteria Leber congenital amaurosis 1
  • p.Ala950Thr No assertion criteria Leber congenital amaurosis 1
  • p.Arg1059Ter No assertion criteria inherited retinal dystrophy
  • p.Cys780Arg No assertion criteria Leber congenital amaurosis 1
  • p.Glu841Gly No assertion criteria inherited retinal dystrophy
  • p.Glu841Lys No assertion criteria maculopathy
  • p.Gly1034fs No assertion criteria Leber congenital amaurosis
  • p.Gly18_Leu33dup No assertion criteria Leber congenital amaurosis 1
  • p.Gly928Ala No assertion criteria Leber congenital amaurosis 1
  • p.His980Leu No assertion criteria Leber congenital amaurosis 1 ⚠
  • p.Leu648Pro No assertion criteria Leber congenital amaurosis 1
  • p.Leu881Pro No assertion criteria inherited retinal dystrophy
  • p.Phe642Val No assertion criteria Leber congenital amaurosis 1
  • p.Phe876Ser No assertion criteria Leber congenital amaurosis 1
  • p.Pro745fs No assertion criteria Leber congenital amaurosis
  • p.Ser958Arg No assertion criteria Leber congenital amaurosis 1
  • p.Trp1055Gly No assertion criteria Leber congenital amaurosis 1
  • p.Tyr827Phe No assertion criteria inherited retinal dystrophy
  • p.Val887Gly No assertion criteria Leber congenital amaurosis 1
  • p.Val902Leu No assertion criteria cone-rod dystrophy

Conflicting classifications of pathogenicity 53

Benign 29

Benign/Likely benign 12

  • c.1026+6C>T Multiple submitters Leber congenital amaurosis 1
  • c.1566+17G>A Multiple submitters Leber congenital amaurosis 1
  • c.2413-14C>T Multiple submitters Leber congenital amaurosis 1
  • c.2577-15G>A Multiple submitters cone-rod dystrophy 6
  • c.3225-10C>T Multiple submitters Leber congenital amaurosis 1
  • c.3225-10del Multiple submitters Leber congenital amaurosis 1
  • c.3225-7C>T Multiple submitters cone-rod dystrophy 6
  • p.Gly553= Multiple submitters cone-rod dystrophy 6
  • p.Leu205= Multiple submitters cone-rod dystrophy 6
  • p.Pro1099= Multiple submitters cone-rod dystrophy 6
  • p.Ser1082= Multiple submitters Leber congenital amaurosis 1
  • p.Val373= Multiple submitters cone-rod dystrophy 6

Likely benign 616

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 721

Showing the top 300 by review status; the full set is in the sitemap.