HIF1A — 119 ClinVar variants
All ClinVar germline HIF1A variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 90 flagged for review →
1 Pathogenic · 5 Likely pathogenic · 4 Conflicting · 8 Benign · 4 Benign/Likely benign · 12 Likely benign · 85 Uncertain significance
Full HIF1A gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 90
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 5
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
-
HIF1A p.Ala654Val
Likely pathogenic
Single submitter
Maffucci syndrome
-
HIF1A p.Arg631His
Likely pathogenic
Single submitter
Ollier disease
-
HIF1A p.Glu457Lys
Likely pathogenic
Single submitter
Maffucci syndrome
-
HIF1A p.Pro215Leu
Likely pathogenic
Single submitter
Ollier disease
-
HIF1A p.Ser692Cys
Likely pathogenic
Single submitter
Ollier disease
Predictors agree, ClinVar conflicts 3
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
- HIF1A p.Ala588Thr Conflicting Single submitter
-
HIF1A p.Asp422Tyr
Conflicting
Single submitter
Ollier disease
-
HIF1A p.Pro582Ser
Conflicting
Single submitter
cholangiocarcinoma
Predictors lean, ClinVar uncertain 69
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- HIF1A p.Gln679Glu Uncertain significance Multiple submitters
- HIF1A p.Ala404Ser Uncertain significance Single submitter
- HIF1A p.Ala41Ser Uncertain significance Single submitter
- HIF1A p.Ala41Val Uncertain significance Single submitter
- HIF1A p.Ala456Thr Uncertain significance Single submitter
- HIF1A p.Ala640Pro Uncertain significance Single submitter
- HIF1A p.Arg245Gln Uncertain significance Single submitter
- HIF1A p.Arg665Gln Uncertain significance Single submitter
- HIF1A p.Arg665Trp Uncertain significance Single submitter
- HIF1A p.Arg671Gly Uncertain significance Single submitter
- HIF1A p.Arg68His Uncertain significance Single submitter
- HIF1A p.Asn204Lys Uncertain significance Single submitter
- HIF1A p.Asn204Ser Uncertain significance Single submitter
- HIF1A p.Asn689Lys Uncertain significance Single submitter
- HIF1A p.Asp249Ala Uncertain significance Single submitter
- HIF1A p.Asp524Glu Uncertain significance Single submitter
- HIF1A p.Asp578Asn Uncertain significance Single submitter
- HIF1A p.Asp74His Uncertain significance Single submitter
- HIF1A p.Asp97His Uncertain significance Single submitter
- HIF1A p.Cys139Arg Uncertain significance Single submitter
- HIF1A p.Cys359Arg Uncertain significance Single submitter
- HIF1A p.Gln164His Uncertain significance Single submitter
- HIF1A p.Gln347Arg Uncertain significance Single submitter
- HIF1A p.Gln355His Uncertain significance Single submitter
- HIF1A p.Gln596His Uncertain significance Single submitter
- HIF1A p.Gln717His Uncertain significance Single submitter
- HIF1A p.Gln763Arg Uncertain significance Single submitter
- HIF1A p.Gln824Lys Uncertain significance Single submitter
- HIF1A p.Glu705Lys Uncertain significance Single submitter
- HIF1A p.Gly757Glu Uncertain significance Single submitter
- HIF1A p.Gly784Glu Uncertain significance Single submitter
- HIF1A p.His42Arg Uncertain significance Single submitter
- HIF1A p.His724Tyr Uncertain significance Single submitter
- HIF1A p.Ile13Val Uncertain significance Single submitter
- HIF1A p.Ile639Ser Uncertain significance Single submitter
- HIF1A p.Ile677Thr Uncertain significance Single submitter
- HIF1A p.Ile774Met Uncertain significance Single submitter
- HIF1A p.Leu773Phe Uncertain significance Single submitter
- HIF1A p.Leu78Met Uncertain significance Single submitter
- HIF1A p.Met371Ile Uncertain significance Single submitter
- HIF1A p.Met491Thr Uncertain significance Single submitter
- HIF1A p.Met491Val Uncertain significance Single submitter
- HIF1A p.Met787Ile Uncertain significance Single submitter
- HIF1A p.Met84Arg Uncertain significance Single submitter
- HIF1A p.Phe521Cys Uncertain significance Single submitter
- HIF1A p.Pro439Leu Uncertain significance Single submitter
- HIF1A p.Pro499Leu Uncertain significance Single submitter
- HIF1A p.Pro658Leu Uncertain significance Single submitter
- HIF1A p.Pro708Ala Uncertain significance Single submitter
- HIF1A p.Ser205Gly Uncertain significance Single submitter
- HIF1A p.Ser51Thr Uncertain significance Single submitter
- HIF1A p.Ser525Gly Uncertain significance Single submitter
- HIF1A p.Ser589Thr Uncertain significance Single submitter
- HIF1A p.Ser653Thr Uncertain significance Single submitter
- HIF1A p.Ser656Pro Uncertain significance Single submitter
- HIF1A p.Thr241Asn Uncertain significance Single submitter
- HIF1A p.Thr290Ser Uncertain significance Single submitter
- HIF1A p.Thr407Ile Uncertain significance Single submitter
- HIF1A p.Thr544Lys Uncertain significance Single submitter
- HIF1A p.Thr598Pro Uncertain significance Single submitter
- HIF1A p.Thr615Ile Uncertain significance Single submitter
- HIF1A p.Thr652Ala Uncertain significance Single submitter
- HIF1A p.Thr655Ile Uncertain significance Single submitter
- HIF1A p.Val200Leu Uncertain significance Single submitter
- HIF1A p.Val364Ala Uncertain significance Single submitter
- HIF1A p.Val428Ile Uncertain significance Single submitter
- HIF1A p.Val528Ala Uncertain significance Single submitter
- HIF1A p.Val693Ile Uncertain significance Single submitter
- HIF1A p.Val732Ile Uncertain significance Single submitter
Predictors split 13
The independent predictors disagree with each other — read with care.
- HIF1A p.Ala404Thr Uncertain significance Single submitter
- HIF1A p.Ala804Gly Uncertain significance Single submitter
- HIF1A p.Arg145Thr Uncertain significance Single submitter
- HIF1A p.Asp433Gly Uncertain significance Single submitter
- HIF1A p.Leu813Pro Uncertain significance Single submitter
- HIF1A p.Lys21Arg Uncertain significance Single submitter
- HIF1A p.Met120Thr Uncertain significance Single submitter
- HIF1A p.Met435Thr Uncertain significance Single submitter
- HIF1A p.Met60Ile Uncertain significance Single submitter
- HIF1A p.Ser52Leu Uncertain significance Single submitter
-
HIF1A p.Val50Leu
Conflicting
Single submitter
Maffucci syndrome
- HIF1A p.Val802Gly Uncertain significance Single submitter
-
HIF1A p.Glu234Lys
Uncertain significance
No assertion criteria
prostate cancer
All HIF1A variants
Pathogenic 1
- p.Gly98Asp Single submitter
Likely pathogenic 5
- p.Ala654Val Single submitter Maffucci syndrome ⚠
- p.Arg631His Single submitter Ollier disease ⚠
- p.Glu457Lys Single submitter Maffucci syndrome ⚠
- p.Pro215Leu Single submitter Ollier disease ⚠
- p.Ser692Cys Single submitter Ollier disease ⚠
Conflicting classifications of pathogenicity 4
- p.Ala588Thr Single submitter ⚠
- p.Asp422Tyr Single submitter Ollier disease ⚠
- p.Pro582Ser Single submitter cholangiocarcinoma ⚠
- p.Val50Leu Single submitter Maffucci syndrome ⚠
Benign 8
- p.Lys213= Multiple submitters
- c.35+2003del Single submitter
- c.881-4dup Single submitter
- p.Asp256= Single submitter
- p.Gly211= Single submitter
- p.Gly414= Single submitter
- p.Leu580= Single submitter
- p.Thr260= Single submitter
Benign/Likely benign 4
- p.Asp349Asn Multiple submitters
- p.Gly784= Multiple submitters
- p.Thr418Ile Multiple submitters
- p.Thr600= Multiple submitters
Likely benign 12
- c.774-3C>T Single submitter
- c.880+16G>T Single submitter
- c.881-10T>C Single submitter
- p.Ala475Ser Single submitter
- p.Ala694Thr Single submitter
- p.Arg631Gly Single submitter
- p.Gly121= Single submitter
- p.Ile806Val Single submitter
- p.Leu813= Single submitter
- p.Pro564= Single submitter
- p.Ser502= Single submitter
- p.Val599Ile Single submitter
Uncertain significance 85
- p.Gln679Glu Multiple submitters ⚠
- p.Ala404Ser Single submitter ⚠
- p.Ala404Thr Single submitter ⚠
- p.Ala41Ser Single submitter ⚠
- p.Ala41Val Single submitter ⚠
- p.Ala456Thr Single submitter ⚠
- p.Ala640Pro Single submitter ⚠
- p.Ala804Gly Single submitter ⚠
- p.Arg145Thr Single submitter ⚠
- p.Arg245Gln Single submitter ⚠
- p.Arg665Gln Single submitter ⚠
- p.Arg665Trp Single submitter ⚠
- p.Arg671Gly Single submitter ⚠
- p.Arg68His Single submitter ⚠
- p.Asn204Lys Single submitter ⚠
- p.Asn204Ser Single submitter ⚠
- p.Asn689Lys Single submitter ⚠
- p.Asp249Ala Single submitter ⚠
- p.Asp433Gly Single submitter ⚠
- p.Asp524Glu Single submitter ⚠
- p.Asp578Asn Single submitter ⚠
- p.Asp74His Single submitter ⚠
- p.Asp97His Single submitter ⚠
- p.Cys139Arg Single submitter ⚠
- p.Cys359Arg Single submitter ⚠
- p.Gln164His Single submitter ⚠
- p.Gln347Arg Single submitter ⚠
- p.Gln355His Single submitter ⚠
- p.Gln596His Single submitter ⚠
- p.Gln717His Single submitter ⚠
- p.Gln763Arg Single submitter ⚠
- p.Gln824Lys Single submitter ⚠
- p.Glu261Lys Single submitter
- p.Glu705Lys Single submitter ⚠
- p.Gly757Glu Single submitter ⚠
- p.Gly784Glu Single submitter ⚠
- p.His42Arg Single submitter ⚠
- p.His724Tyr Single submitter ⚠
- p.Ile13Val Single submitter ⚠
- p.Ile639Ser Single submitter ⚠
- p.Ile677Thr Single submitter ⚠
- p.Ile774Met Single submitter ⚠
- p.Leu430fs Single submitter
- p.Leu430Ser Single submitter
- p.Leu462_Arg463del Single submitter
- p.Leu773Phe Single submitter ⚠
- p.Leu78Met Single submitter ⚠
- p.Leu813Pro Single submitter ⚠
- p.Lys21Arg Single submitter ⚠
- p.Met120Thr Single submitter ⚠
- p.Met371Ile Single submitter ⚠
- p.Met435Thr Single submitter ⚠
- p.Met491Thr Single submitter ⚠
- p.Met491Val Single submitter ⚠
- p.Met60Ile Single submitter ⚠
- p.Met787Ile Single submitter ⚠
- p.Met84Arg Single submitter ⚠
- p.Phe521Cys Single submitter ⚠
- p.Pro439Leu Single submitter ⚠
- p.Pro499Leu Single submitter ⚠
- p.Pro658Leu Single submitter ⚠
- p.Pro708Ala Single submitter ⚠
- p.Ser205Gly Single submitter ⚠
- p.Ser51Thr Single submitter ⚠
- p.Ser525Gly Single submitter ⚠
- p.Ser52Leu Single submitter ⚠
- p.Ser589Thr Single submitter ⚠
- p.Ser653Thr Single submitter ⚠
- p.Ser656Pro Single submitter ⚠
- p.Thr241Asn Single submitter ⚠
- p.Thr290Ser Single submitter ⚠
- p.Thr407Ile Single submitter ⚠
- p.Thr544Lys Single submitter ⚠
- p.Thr598Pro Single submitter ⚠
- p.Thr615Ile Single submitter ⚠
- p.Thr652Ala Single submitter ⚠
- p.Thr655Ile Single submitter ⚠
- p.Val200Leu Single submitter ⚠
- p.Val364Ala Single submitter ⚠
- p.Val428Ile Single submitter ⚠
- p.Val528Ala Single submitter ⚠
- p.Val693Ile Single submitter ⚠
- p.Val732Ile Single submitter ⚠
- p.Val802Gly Single submitter ⚠
- p.Glu234Lys No assertion criteria prostate cancer ⚠