HOGA1 — 559 ClinVar variants

All ClinVar germline HOGA1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 166 flagged for review →

34 Pathogenic · 29 Pathogenic/Likely pathogenic · 71 Likely pathogenic · 32 Conflicting · 18 Benign · 8 Benign/Likely benign · 196 Likely benign · 171 Uncertain significance

Full HOGA1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 166

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 17

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 17

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 88

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 44

The independent predictors disagree with each other — read with care.

All HOGA1 variants

Pathogenic 34

Pathogenic/Likely pathogenic 29

  • c.834+2T>C Multiple submitters primary hyperoxaluria type 3
  • p.Ala130fs Multiple submitters primary hyperoxaluria type 3
  • p.Ala278= Multiple submitters HOGA1-related disorders
  • p.Arg255Ter Multiple submitters primary hyperoxaluria type 3
  • p.Arg271Cys Multiple submitters primary hyperoxaluria type 3 ⚠
  • p.Arg271His Multiple submitters primary hyperoxaluria type 3 ⚠
  • p.Arg70Pro Multiple submitters primary hyperoxaluria type 3 ⚠
  • p.Arg97Cys Multiple submitters primary hyperoxaluria type 3 ⚠
  • p.Arg97His Multiple submitters primary hyperoxaluria type 3 ⚠
  • p.Cys257Gly Multiple submitters HOGA1-related disorders
  • p.Glu113Lys Multiple submitters primary hyperoxaluria type 3
  • p.Glu315del Multiple submitters primary hyperoxaluria type 3
  • p.Gly287Glu Multiple submitters primary hyperoxaluria type 3
  • p.Gly325Ser Multiple submitters primary hyperoxaluria type 3 ⚠
  • p.Gly37Asp Multiple submitters primary hyperoxaluria type 3
  • p.Gly76Asp Multiple submitters primary hyperoxaluria type 3
  • p.Lys63fs Multiple submitters primary hyperoxaluria type 3
  • p.Met1Arg Multiple submitters primary hyperoxaluria type 3
  • p.Pro138fs Multiple submitters primary hyperoxaluria type 3
  • p.Pro190Leu Multiple submitters HOGA1-related disorders ⚠
  • p.Pro41_Val42insTer Multiple submitters primary hyperoxaluria type 3
  • p.Pro41fs Multiple submitters primary hyperoxaluria type 3
  • p.Pro45Leu Multiple submitters primary hyperoxaluria type 3
  • p.Pro4fs Multiple submitters primary hyperoxaluria type 3
  • p.Val239fs Multiple submitters primary hyperoxaluria type 3
  • p.Val245Ile Multiple submitters primary hyperoxaluria type 3 ⚠
  • p.Val245Phe Multiple submitters primary hyperoxaluria type 3 ⚠
  • p.Val42fs Multiple submitters primary hyperoxaluria type 3
  • p.Val74Gly Multiple submitters HOGA1-related disorders ⚠

Likely pathogenic 71

Conflicting classifications of pathogenicity 32

Benign 18

Benign/Likely benign 8

  • c.212-21A>G Multiple submitters primary hyperoxaluria type 3
  • c.700+67G>A Multiple submitters primary hyperoxaluria type 3
  • c.700+7C>T Multiple submitters primary hyperoxaluria type 3
  • c.701-11_701-8dup Multiple submitters
  • c.-279G>A Multiple submitters primary hyperoxaluria type 3
  • c.*94C>T Multiple submitters primary hyperoxaluria type 3
  • p.Ala132= Multiple submitters primary hyperoxaluria type 3
  • p.Val239Ile Multiple submitters primary hyperoxaluria type 3

Likely benign 196

Uncertain significance 171