HOMER2 — 237 ClinVar variants
All ClinVar germline HOMER2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 102 flagged for review →
3 Pathogenic · 1 Pathogenic/Likely pathogenic · 1 Likely pathogenic · 15 Conflicting · 25 Benign · 12 Benign/Likely benign · 74 Likely benign · 106 Uncertain significance
Full HOMER2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 102
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 9
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
- HOMER2 p.Ala166Val Conflicting Single submitter
-
HOMER2 p.Arg180Gln
Conflicting
Single submitter
Inborn genetic diseases
- HOMER2 p.Asn19Asp Conflicting Single submitter
- HOMER2 p.Asp138Gly Conflicting Single submitter
- HOMER2 p.Asp342Gly Conflicting Single submitter
-
HOMER2 p.Glu181Asp
Conflicting
Single submitter
Inborn genetic diseases
-
HOMER2 p.Ile61Val
Conflicting
Single submitter
Inborn genetic diseases
-
HOMER2 p.Leu238Pro
Conflicting
Single submitter
Inborn genetic diseases
-
HOMER2 p.Lys120Glu
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 70
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
HOMER2 p.Arg215His
Uncertain significance
Multiple submitters
Inborn genetic diseases
- HOMER2 p.Arg309Cys Uncertain significance Multiple submitters
-
HOMER2 p.Arg334Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Asn235Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Glu255Asp
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Glu274Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Gly335Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Lys217Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Lys234Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Pro26Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Ser132Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Ser196Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Ser205Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Thr117Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Thr136Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Thr163Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Thr299Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
- HOMER2 p.Tyr45Cys Uncertain significance Multiple submitters
-
HOMER2 c.388-12T>C
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 c.388-23G>A
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Ala110Val Uncertain significance Single submitter
- HOMER2 p.Ala247Val Uncertain significance Single submitter
-
HOMER2 p.Ala82Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Arg202Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Arg250Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Arg260Gln Uncertain significance Single submitter
-
HOMER2 p.Arg285Lys
Uncertain significance
Single submitter
autosomal dominant nonsyndromic hearing loss 68
- HOMER2 p.Arg295Cys Uncertain significance Single submitter
-
HOMER2 p.Arg307Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Arg333His Uncertain significance Single submitter
-
HOMER2 p.Arg46Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Asn148His Uncertain significance Single submitter
-
HOMER2 p.Asp156Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Asp209Gly Uncertain significance Single submitter
- HOMER2 p.Asp286Asn Uncertain significance Single submitter
- HOMER2 p.Gln224His Uncertain significance Single submitter
-
HOMER2 p.Glu181Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Glu251Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Glu251Gln Uncertain significance Single submitter
- HOMER2 p.Glu251Lys Uncertain significance Single submitter
- HOMER2 p.Glu272Gly Uncertain significance Single submitter
- HOMER2 p.Glu274Gln Uncertain significance Single submitter
- HOMER2 p.Glu320Lys Uncertain significance Single submitter
- HOMER2 p.Gly52Arg Uncertain significance Single submitter
-
HOMER2 p.His143Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Ile242Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Ile57Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Ile57Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Ile6Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Leu259Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Leu339Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Leu339Val
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Lys217Arg Uncertain significance Single submitter
- HOMER2 p.Lys232Asn Uncertain significance Single submitter
- HOMER2 p.Phe14Tyr Uncertain significance Single submitter
-
HOMER2 p.Phe67Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Pro267Thr Uncertain significance Single submitter
- HOMER2 p.Pro63Gln Uncertain significance Single submitter
- HOMER2 p.Pro63Leu Uncertain significance Single submitter
-
HOMER2 p.Ser125Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Ser125Gly Uncertain significance Single submitter
- HOMER2 p.Ser205Ala Uncertain significance Single submitter
-
HOMER2 p.Ser49Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Thr341Asn
Uncertain significance
Single submitter
autosomal dominant nonsyndromic hearing loss 68
- HOMER2 p.Thr97Ala Uncertain significance Single submitter
- HOMER2 p.Tyr36Cys Uncertain significance Single submitter
- HOMER2 p.Tyr38Cys Uncertain significance Single submitter
-
HOMER2 p.Val294Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Ala144Thr Uncertain significance No assertion criteria
-
HOMER2 p.Val169Ala
Uncertain significance
No assertion criteria
HOMER2-related disorder
Predictors split 23
The independent predictors disagree with each other — read with care.
-
HOMER2 p.Arg208Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Arg213Trp
Uncertain significance
Multiple submitters
HOMER2-related disorder
-
HOMER2 p.Val169Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
HOMER2 p.Val34Ile
Uncertain significance
Multiple submitters
autosomal dominant nonsyndromic hearing loss 68
-
HOMER2 c.388-17C>A
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Ala113Asp Uncertain significance Single submitter
- HOMER2 p.Ala27Val Uncertain significance Single submitter
-
HOMER2 p.Arg10Gln
Conflicting
Single submitter
Inborn genetic diseases
-
HOMER2 p.Arg180Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Arg185Gln Uncertain significance Single submitter
-
HOMER2 p.Arg185Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Arg215Cys Conflicting Single submitter
- HOMER2 p.Asn211Asp Uncertain significance Single submitter
- HOMER2 p.Asn64Thr Uncertain significance Single submitter
-
HOMER2 p.Gln72Lys
Conflicting
Single submitter
Inborn genetic diseases
-
HOMER2 p.Gly135Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Ile266Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- HOMER2 p.Ile326Thr Uncertain significance Single submitter
- HOMER2 p.Leu162Met Uncertain significance Single submitter
- HOMER2 p.Ser165Asn Uncertain significance Single submitter
-
HOMER2 p.Ser193Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
HOMER2 p.Ser44Gly
Uncertain significance
Single submitter
autosomal dominant nonsyndromic hearing loss 68
-
HOMER2 p.Glu210Lys
Uncertain significance
No assertion criteria
HOMER2-related disorder
All HOMER2 variants
Pathogenic 3
- p.Arg185Pro No assertion criteria autosomal dominant nonsyndromic hearing loss 68
- p.Met270fs No assertion criteria autosomal dominant nonsyndromic hearing loss 68
- p.Pro267fs No assertion criteria autosomal dominant nonsyndromic hearing loss 68
Pathogenic/Likely pathogenic 1
- p.Asp342fs Multiple submitters autosomal dominant nonsyndromic hearing loss 68
Likely pathogenic 1
- p.Ter344Trp Single submitter autosomal dominant nonsyndromic hearing loss 68
Conflicting classifications of pathogenicity 15
- c.763-8del Single submitter
- p.Ala11= Single submitter
- p.Ala166Val Single submitter ⚠
- p.Arg10Gln Single submitter Inborn genetic diseases ⚠
- p.Arg180Gln Single submitter Inborn genetic diseases ⚠
- p.Arg215Cys Single submitter ⚠
- p.Asn19Asp Single submitter ⚠
- p.Asp138Gly Single submitter ⚠
- p.Asp342Gly Single submitter ⚠
- p.Gln203His Single submitter Inborn genetic diseases
- p.Gln72Lys Single submitter Inborn genetic diseases ⚠
- p.Glu181Asp Single submitter Inborn genetic diseases ⚠
- p.Ile61Val Single submitter Inborn genetic diseases ⚠
- p.Leu238Pro Single submitter Inborn genetic diseases ⚠
- p.Lys120Glu Single submitter Inborn genetic diseases ⚠
Benign 25
- c.163-21C>T Multiple submitters
- c.294+67G>A Multiple submitters
- c.494+219A>T Multiple submitters
- c.5+145G>A Multiple submitters
- c.5+62C>G Multiple submitters
- c.5+94G>T Multiple submitters
- c.6-13T>C Multiple submitters
- c.6-4G>C Multiple submitters
- c.651+28G>C Multiple submitters
- c.651+9G>A Multiple submitters
- c.652-32G>A Multiple submitters
- c.844-47C>T Multiple submitters
- p.Arg208His Multiple submitters
- p.Asp327= Multiple submitters
- c.162+142C>T Single submitter
- c.162+295A>G Single submitter
- c.294+177G>T Single submitter
- c.294+319T>C Single submitter
- c.387+7C>T Single submitter
- c.388-179dup Single submitter
- c.388-61A>G Single submitter
- c.651+233T>C Single submitter
- c.762+312C>T Single submitter
- c.763-245T>C Single submitter
- c.763-8dup Single submitter
Benign/Likely benign 12
- c.387+14C>G Multiple submitters
- c.387+6A>T Multiple submitters
- c.388-25G>A Multiple submitters
- c.495-14T>A Multiple submitters
- c.495-20C>T Multiple submitters
- p.Ala78= Multiple submitters
- p.Arg213Gln Multiple submitters autosomal dominant nonsyndromic hearing loss 68
- p.Cys273= Multiple submitters
- p.Glu198= Multiple submitters
- p.Glu255Gly Multiple submitters
- p.Ile121= Multiple submitters
- p.Ile265Val Multiple submitters
Likely benign 74
- c.294+19C>T Multiple submitters
- c.295-15A>G Multiple submitters
- c.388-17C>G Multiple submitters
- c.495-16C>T Multiple submitters
- c.495-19G>A Multiple submitters
- c.762+17C>T Multiple submitters
- c.762+18G>A Multiple submitters
- c.844-43C>A Multiple submitters
- p.Ala144= Multiple submitters
- p.Ala31= Multiple submitters
- p.Asp323= Multiple submitters
- c.163-12G>T Single submitter
- c.163-8T>G Single submitter
- c.294+11C>T Single submitter
- c.294+9G>A Single submitter
- c.295-11T>C Single submitter
- c.387+10T>C Single submitter
- c.387+14C>T Single submitter
- c.387+41del Single submitter
- c.387+9T>G Single submitter
- c.388-16C>T Single submitter
- c.388-180_388-179insGTTTA Single submitter
- c.388-53A>G Single submitter
- c.494+12T>G Single submitter
- c.495-13C>A Single submitter
- c.495-15_495-14delinsTC Single submitter
- c.495-15G>A Single submitter
- c.5+15G>A Single submitter
- c.6-19G>A Single submitter
- c.6-8T>C Single submitter
- c.6-9_6-8del Single submitter
- c.651+10G>A Single submitter
- c.651+14A>G Single submitter
- c.651+19G>C Single submitter
- c.652-18G>A Single submitter
- c.762+124G>A Single submitter
- c.762+27C>G Single submitter
- c.762+2T>A Single submitter
- c.762+35G>A Single submitter
- c.763-15A>T Single submitter
- c.843+9G>A Single submitter
- c.*172C>T Single submitter
- p.Ala166Thr Single submitter
- p.Ala167Thr Single submitter
- p.Arg309= Single submitter
- p.Arg46Trp Single submitter
- p.Asn134= Single submitter
- p.Asn168= Single submitter
- p.Asp323Asn Single submitter
- p.Asp51= Single submitter
- p.Gln237= Single submitter
- p.Gln30Arg Single submitter
- p.Glu139= Single submitter
- p.Glu175= Single submitter
- p.Glu181= Single submitter
- p.Glu243Lys Single submitter
- p.His143= Single submitter
- p.Ile112Thr Single submitter
- p.Ile174= Single submitter
- p.Ile265= Single submitter
- p.Lys22= Single submitter
- p.Lys305= Single submitter
- p.Lys325Arg Single submitter
- p.Ser131= Single submitter
- p.Ser182= Single submitter
- p.Thr117= Single submitter
- p.Thr236Met Single submitter
- p.Thr341= Single submitter
- p.Thr66= Single submitter
- p.Thr8= Single submitter
- p.Val197= Single submitter
- p.Val40= Single submitter
- p.Glu244= No assertion criteria HOMER2-related disorder
- p.Thr163= No assertion criteria HOMER2-related disorder
Uncertain significance 106
- p.Arg208Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg213Trp Multiple submitters HOMER2-related disorder ⚠
- p.Arg215His Multiple submitters Inborn genetic diseases ⚠
- p.Arg309Cys Multiple submitters ⚠
- p.Arg334Gln Multiple submitters Inborn genetic diseases ⚠
- p.Asn235Lys Multiple submitters Inborn genetic diseases ⚠
- p.Glu255Asp Multiple submitters Inborn genetic diseases ⚠
- p.Glu274Lys Multiple submitters Inborn genetic diseases ⚠
- p.Gly335Glu Multiple submitters Inborn genetic diseases ⚠
- p.Lys217Thr Multiple submitters Inborn genetic diseases ⚠
- p.Lys234Asn Multiple submitters Inborn genetic diseases ⚠
- p.Pro26Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ser132Cys Multiple submitters Inborn genetic diseases ⚠
- p.Ser196Thr Multiple submitters Inborn genetic diseases ⚠
- p.Ser205Phe Multiple submitters Inborn genetic diseases ⚠
- p.Thr117Met Multiple submitters Inborn genetic diseases ⚠
- p.Thr136Met Multiple submitters Inborn genetic diseases ⚠
- p.Thr163Met Multiple submitters Inborn genetic diseases ⚠
- p.Thr299Ile Multiple submitters Inborn genetic diseases ⚠
- p.Tyr45Cys Multiple submitters ⚠
- p.Val169Met Multiple submitters Inborn genetic diseases ⚠
- p.Val34Ile Multiple submitters autosomal dominant nonsyndromic hearing loss 68 ⚠
- c.162+4C>T Single submitter
- c.387+2_387+5del Single submitter
- c.388-12T>C Single submitter Inborn genetic diseases ⚠
- c.388-17C>A Single submitter Inborn genetic diseases ⚠
- c.388-23G>A Single submitter Inborn genetic diseases ⚠
- c.388-39G>C Single submitter
- c.388-8_388-3del Single submitter
- c.494+4A>G Single submitter
- c.5+7_5+34del Single submitter
- c.-185_5+25del Single submitter
- p.Ala110Val Single submitter ⚠
- p.Ala113Asp Single submitter ⚠
- p.Ala195= Single submitter
- p.Ala247Val Single submitter ⚠
- p.Ala27Val Single submitter ⚠
- p.Ala282= Single submitter
- p.Ala82Val Single submitter Inborn genetic diseases ⚠
- p.Arg180Trp Single submitter Inborn genetic diseases ⚠
- p.Arg185Gln Single submitter ⚠
- p.Arg185Trp Single submitter Inborn genetic diseases ⚠
- p.Arg202Lys Single submitter Inborn genetic diseases ⚠
- p.Arg250Gln Single submitter Inborn genetic diseases ⚠
- p.Arg260Gln Single submitter ⚠
- p.Arg285Lys Single submitter autosomal dominant nonsyndromic hearing loss 68 ⚠
- p.Arg295Cys Single submitter ⚠
- p.Arg307Gln Single submitter Inborn genetic diseases ⚠
- p.Arg333Cys Single submitter Inborn genetic diseases
- p.Arg333His Single submitter ⚠
- p.Arg46Gln Single submitter Inborn genetic diseases ⚠
- p.Asn148His Single submitter ⚠
- p.Asn211Asp Single submitter ⚠
- p.Asn64Thr Single submitter ⚠
- p.Asp156Glu Single submitter Inborn genetic diseases ⚠
- p.Asp209Gly Single submitter ⚠
- p.Asp286Asn Single submitter ⚠
- p.Gln224His Single submitter ⚠
- p.Glu181Gln Single submitter Inborn genetic diseases ⚠
- p.Glu251Asp Single submitter Inborn genetic diseases ⚠
- p.Glu251Gln Single submitter ⚠
- p.Glu251Lys Single submitter ⚠
- p.Glu272Gly Single submitter ⚠
- p.Glu274Gln Single submitter ⚠
- p.Glu320Lys Single submitter ⚠
- p.Gly135Arg Single submitter Inborn genetic diseases ⚠
- p.Gly340= Single submitter
- p.Gly52Arg Single submitter ⚠
- p.His143Leu Single submitter Inborn genetic diseases ⚠
- p.Ile242Met Single submitter Inborn genetic diseases ⚠
- p.Ile266Thr Single submitter Inborn genetic diseases ⚠
- p.Ile326Thr Single submitter ⚠
- p.Ile57Leu Single submitter Inborn genetic diseases ⚠
- p.Ile57Thr Single submitter Inborn genetic diseases ⚠
- p.Ile6Phe Single submitter Inborn genetic diseases ⚠
- p.Leu162Met Single submitter ⚠
- p.Leu259Phe Single submitter Inborn genetic diseases ⚠
- p.Leu315Ter Single submitter HOMER2-related disorder
- p.Leu339Gln Single submitter Inborn genetic diseases ⚠
- p.Leu339Val Single submitter Inborn genetic diseases ⚠
- p.Lys201Glu Single submitter
- p.Lys217Arg Single submitter ⚠
- p.Lys232Asn Single submitter ⚠
- p.Phe14Tyr Single submitter ⚠
- p.Phe67Tyr Single submitter Inborn genetic diseases ⚠
- p.Pro267Thr Single submitter ⚠
- p.Pro63Gln Single submitter ⚠
- p.Pro63Leu Single submitter ⚠
- p.Ser125Asn Single submitter Inborn genetic diseases ⚠
- p.Ser125Gly Single submitter ⚠
- p.Ser165Asn Single submitter ⚠
- p.Ser193Leu Single submitter Inborn genetic diseases ⚠
- p.Ser205Ala Single submitter ⚠
- p.Ser44Gly Single submitter autosomal dominant nonsyndromic hearing loss 68 ⚠
- p.Ser49Asn Single submitter Inborn genetic diseases ⚠
- p.Ter344Glu Single submitter
- p.Ter344Leu Single submitter
- p.Thr178fs Single submitter
- p.Thr341Asn Single submitter autosomal dominant nonsyndromic hearing loss 68 ⚠
- p.Thr97Ala Single submitter ⚠
- p.Tyr36Cys Single submitter ⚠
- p.Tyr38Cys Single submitter ⚠
- p.Val294Leu Single submitter Inborn genetic diseases ⚠
- p.Ala144Thr No assertion criteria ⚠
- p.Glu210Lys No assertion criteria HOMER2-related disorder ⚠
- p.Val169Ala No assertion criteria HOMER2-related disorder ⚠