IFT57 — 257 ClinVar variants
All ClinVar germline IFT57 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 113 flagged for review →
1 Pathogenic · 2 Likely pathogenic · 3 Conflicting · 14 Benign · 3 Benign/Likely benign · 86 Likely benign · 148 Uncertain significance
Full IFT57 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 113
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 3
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 93
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- IFT57 p.Ala155Thr Uncertain significance Multiple submitters
- IFT57 p.Ala37Val Uncertain significance Multiple submitters
- IFT57 p.Arg245Cys Uncertain significance Multiple submitters
- IFT57 p.Asp110Ala Uncertain significance Multiple submitters
- IFT57 p.Asp219His Uncertain significance Multiple submitters
- IFT57 p.Asp228His Uncertain significance Multiple submitters
- IFT57 p.Gln403His Uncertain significance Multiple submitters
- IFT57 p.Glu171Asp Uncertain significance Multiple submitters
- IFT57 p.Glu276Asp Uncertain significance Multiple submitters
- IFT57 p.Gly139Val Uncertain significance Multiple submitters
- IFT57 p.Leu185Phe Uncertain significance Multiple submitters
- IFT57 p.Met367Thr Uncertain significance Multiple submitters
- IFT57 p.Met40Val Uncertain significance Multiple submitters
- IFT57 p.Pro169Leu Uncertain significance Multiple submitters
- IFT57 p.Ser120Cys Uncertain significance Multiple submitters
- IFT57 p.Ser177Asn Uncertain significance Multiple submitters
- IFT57 p.Thr340Met Uncertain significance Multiple submitters
- IFT57 p.Val178Ile Uncertain significance Multiple submitters
- IFT57 p.Val210Ile Uncertain significance Multiple submitters
-
IFT57 p.Val397Glu
Uncertain significance
Multiple submitters
Bardet-Biedl syndrome
- IFT57 p.Ala113Pro Uncertain significance Single submitter
- IFT57 p.Ala152Asp Uncertain significance Single submitter
- IFT57 p.Ala152Thr Uncertain significance Single submitter
- IFT57 p.Ala224Thr Uncertain significance Single submitter
- IFT57 p.Ala321Ser Uncertain significance Single submitter
- IFT57 p.Ala425Val Uncertain significance Single submitter
- IFT57 p.Ala4Val Uncertain significance Single submitter
- IFT57 p.Ala92Ser Uncertain significance Single submitter
- IFT57 p.Arg100His Uncertain significance Single submitter
- IFT57 p.Arg123Pro Uncertain significance Single submitter
- IFT57 p.Arg331Gln Uncertain significance Single submitter
- IFT57 p.Arg55His Uncertain significance Single submitter
- IFT57 p.Arg62Gln Uncertain significance Single submitter
- IFT57 p.Asn258Ser Uncertain significance Single submitter
- IFT57 p.Asn96Ser Uncertain significance Single submitter
- IFT57 p.Asp181Gly Uncertain significance Single submitter
- IFT57 p.Asp191Val Uncertain significance Single submitter
- IFT57 p.Asp200Glu Uncertain significance Single submitter
- IFT57 p.Asp219Gly Uncertain significance Single submitter
- IFT57 p.Asp260Ala Uncertain significance Single submitter
- IFT57 p.Asp266Asn Uncertain significance Single submitter
- IFT57 p.Asp46Glu Uncertain significance Single submitter
- IFT57 p.Cys145Ser Uncertain significance Single submitter
- IFT57 p.Gln324Lys Uncertain significance Single submitter
- IFT57 p.Glu103Gln Uncertain significance Single submitter
- IFT57 p.Glu14Lys Uncertain significance Single submitter
- IFT57 p.Glu14Val Uncertain significance Single submitter
- IFT57 p.Glu174Lys Uncertain significance Single submitter
- IFT57 p.Glu222Lys Uncertain significance Single submitter
- IFT57 p.Glu222Val Uncertain significance Single submitter
- IFT57 p.Glu238Ala Uncertain significance Single submitter
- IFT57 p.Glu23Gly Uncertain significance Single submitter
- IFT57 p.Glu23Lys Uncertain significance Single submitter
- IFT57 p.Glu389Lys Uncertain significance Single submitter
- IFT57 p.Glu58Val Uncertain significance Single submitter
- IFT57 p.Glu82Lys Uncertain significance Single submitter
- IFT57 p.Gly22Ser Uncertain significance Single submitter
- IFT57 p.Gly364Ser Uncertain significance Single submitter
- IFT57 p.His39Arg Uncertain significance Single submitter
- IFT57 p.Ile206Thr Uncertain significance Single submitter
- IFT57 p.Ile229Thr Uncertain significance Single submitter
- IFT57 p.Ile254Val Uncertain significance Single submitter
- IFT57 p.Ile293Val Uncertain significance Single submitter
- IFT57 p.Ile392Val Uncertain significance Single submitter
- IFT57 p.Ile95Val Uncertain significance Single submitter
- IFT57 p.Leu250Met Uncertain significance Single submitter
- IFT57 p.Leu380Ser Uncertain significance Single submitter
- IFT57 p.Lys280Gln Uncertain significance Single submitter
- IFT57 p.Lys305Met Uncertain significance Single submitter
- IFT57 p.Lys384Arg Uncertain significance Single submitter
- IFT57 p.Lys50Asn Uncertain significance Single submitter
- IFT57 p.Met367Leu Uncertain significance Single submitter
- IFT57 p.Met412Val Uncertain significance Single submitter
- IFT57 p.Pro248Leu Uncertain significance Single submitter
- IFT57 p.Pro424Arg Uncertain significance Single submitter
- IFT57 p.Ser177Arg Uncertain significance Single submitter
- IFT57 p.Thr199Arg Uncertain significance Single submitter
- IFT57 p.Thr233Ala Uncertain significance Single submitter
- IFT57 p.Thr253Met Uncertain significance Single submitter
- IFT57 p.Thr256Ile Uncertain significance Single submitter
- IFT57 p.Thr282Ser Uncertain significance Single submitter
- IFT57 p.Thr2Ser Uncertain significance Single submitter
- IFT57 p.Thr343Ala Uncertain significance Single submitter
- IFT57 p.Thr426Lys Uncertain significance Single submitter
- IFT57 p.Tyr140Cys Uncertain significance Single submitter
- IFT57 p.Tyr429Asp Uncertain significance Single submitter
- IFT57 p.Val170Ile Uncertain significance Single submitter
- IFT57 p.Val246Ile Uncertain significance Single submitter
- IFT57 p.Val388Ile Uncertain significance Single submitter
- IFT57 p.Val42Met Uncertain significance Single submitter
- IFT57 p.Val43Ala Uncertain significance Single submitter
- IFT57 p.Val43Met Uncertain significance Single submitter
-
IFT57 p.Ala155Ser
Uncertain significance
No assertion criteria
orofaciodigital syndrome 18
Predictors split 17
The independent predictors disagree with each other — read with care.
- IFT57 p.Pro69Arg Uncertain significance Multiple submitters
- IFT57 p.Pro69Gln Uncertain significance Multiple submitters
- IFT57 p.Arg344Ile Uncertain significance Single submitter
- IFT57 p.Arg55Cys Uncertain significance Single submitter
- IFT57 p.Asn65Ile Uncertain significance Single submitter
- IFT57 p.Asp207His Uncertain significance Single submitter
- IFT57 p.Gln322Glu Uncertain significance Single submitter
- IFT57 p.Glu317Lys Uncertain significance Single submitter
- IFT57 p.Glu398Gly Uncertain significance Single submitter
- IFT57 p.Ile394Thr Uncertain significance Single submitter
- IFT57 p.Lys305Asn Uncertain significance Single submitter
-
IFT57 p.Met390Val
Uncertain significance
Single submitter
orofaciodigital syndrome 18
- IFT57 p.Phe41Leu Uncertain significance Single submitter
- IFT57 p.Thr253Lys Uncertain significance Single submitter
- IFT57 p.Tyr332Cys Uncertain significance Single submitter
- IFT57 p.Tyr56Cys Uncertain significance Single submitter
- IFT57 p.Val246Leu Uncertain significance Single submitter
All IFT57 variants
Pathogenic 1
- p.Lys259= No assertion criteria orofaciodigital syndrome 18
Likely pathogenic 2
- c.585+3A>G Multiple submitters orofaciodigital syndrome 18
- p.Thr294fs Single submitter orofaciodigital syndrome 18
Conflicting classifications of pathogenicity 3
- p.Ile159Val Single submitter ⚠
- p.Ser240Asn Single submitter ⚠
- p.Ser64Asn Single submitter ⚠
Benign 14
- c.1044+9T>C Multiple submitters
- c.375+17C>G Multiple submitters orofaciodigital syndrome 18
- p.Ala3Thr Multiple submitters
- p.Asn411Ser Multiple submitters
- p.Leu156= Multiple submitters
- p.Met1Ile Multiple submitters
- p.Thr340= Multiple submitters
- c.1044+7A>G Single submitter
- c.1111+12C>T Single submitter
- c.212+10_212+33del Single submitter
- c.494+7dup Single submitter
- c.654+12C>T Single submitter
- c.849+19G>A Single submitter
- p.Ser120= Single submitter
Benign/Likely benign 3
Likely benign 86
- c.777+15A>G Multiple submitters
- c.849+18C>T Multiple submitters
- c.850-10G>T Multiple submitters
- p.Arg165= Multiple submitters
- p.Gln333Arg Multiple submitters
- p.Gly12Ala Multiple submitters
- p.Leu241= Multiple submitters
- c.1044+11A>G Single submitter
- c.1045-13G>A Single submitter
- c.1045-18A>T Single submitter
- c.1045-8C>A Single submitter
- c.1112-12T>C Single submitter
- c.1112-20A>G Single submitter
- c.1112-6C>T Single submitter
- c.212+13G>T Single submitter
- c.212+14_212+19del Single submitter
- c.212+19G>A Single submitter
- c.212+4G>A Single submitter
- c.212+7G>A Single submitter
- c.213-14T>G Single submitter
- c.213-15_213-13del Single submitter
- c.375+12C>T Single submitter
- c.375+13G>T Single submitter
- c.375+14A>G Single submitter
- c.494+20A>G Single submitter
- c.585+20T>C Single submitter
- c.585+7G>A Single submitter
- c.585+8T>C Single submitter
- c.586-19T>A Single submitter
- c.586-9T>C Single submitter
- c.654+10A>T Single submitter
- c.654+17A>G Single submitter
- c.655-15T>A Single submitter
- c.655-16A>G Single submitter
- c.655-4T>G Single submitter
- c.777+15del Single submitter
- c.777+17A>G Single submitter
- c.777+19A>G Single submitter
- c.778-10A>C Single submitter
- c.778-10A>G Single submitter
- c.778-12C>G Single submitter
- c.778-13T>C Single submitter
- c.849+10T>C Single submitter
- c.849+14_849+18dup Single submitter
- c.849+19G>T Single submitter
- c.850-14C>G Single submitter
- c.850-16T>G Single submitter
- c.981+9A>G Single submitter
- p.Ala278= Single submitter
- p.Ala98= Single submitter
- p.Arg21= Single submitter
- p.Asn221= Single submitter
- p.Asn258= Single submitter
- p.Asp191= Single submitter
- p.Asp219= Single submitter
- p.Gln270= Single submitter
- p.Gln310= Single submitter
- p.Gln333= Single submitter
- p.Gln403= Single submitter
- p.Glu14= Single submitter
- p.Glu304= Single submitter
- p.Glu389Gln Single submitter
- p.Gly24= Single submitter
- p.Gly427= Single submitter
- p.Gly81= Single submitter
- p.His399= Single submitter
- p.Ile300= Single submitter
- p.Ile307= Single submitter
- p.Leu173= Single submitter
- p.Leu297= Single submitter
- p.Leu314= Single submitter
- p.Leu402= Single submitter
- p.Leu54= Single submitter
- p.Lys305= Single submitter
- p.Lys382= Single submitter
- p.Met40Ile Single submitter
- p.Phe194= Single submitter
- p.Ser240= Single submitter
- p.Thr10= Single submitter
- p.Thr128= Single submitter
- p.Thr25= Single submitter
- p.Thr253= Single submitter
- p.Thr256= Single submitter
- p.Val28Ala Single submitter
- p.Val42= Single submitter
- p.Val8= Single submitter
Uncertain significance 148
- c.981+4A>G Multiple submitters
- p.Ala155Thr Multiple submitters ⚠
- p.Ala37Val Multiple submitters ⚠
- p.Arg245Cys Multiple submitters ⚠
- p.Asp110Ala Multiple submitters ⚠
- p.Asp219His Multiple submitters ⚠
- p.Asp228His Multiple submitters ⚠
- p.Gln403His Multiple submitters ⚠
- p.Glu171Asp Multiple submitters ⚠
- p.Glu276Asp Multiple submitters ⚠
- p.Glu281Lys Multiple submitters
- p.Gly139Val Multiple submitters ⚠
- p.Gly274Arg Multiple submitters
- p.Leu185Phe Multiple submitters ⚠
- p.Leu373Phe Multiple submitters
- p.Lys225fs Multiple submitters Bardet-Biedl syndrome
- p.Met367Thr Multiple submitters ⚠
- p.Met40Val Multiple submitters ⚠
- p.Pro169Leu Multiple submitters ⚠
- p.Pro69Arg Multiple submitters ⚠
- p.Pro69Gln Multiple submitters ⚠
- p.Ser120Cys Multiple submitters ⚠
- p.Ser177Asn Multiple submitters ⚠
- p.Thr340Met Multiple submitters ⚠
- p.Val178Ile Multiple submitters ⚠
- p.Val210Ile Multiple submitters ⚠
- p.Val397Glu Multiple submitters Bardet-Biedl syndrome ⚠
- c.1112-1G>A Single submitter
- c.376-2A>G Single submitter
- c.494+5A>C Single submitter
- c.494+6A>C Single submitter
- c.585+1G>T Single submitter
- c.585+5G>T Single submitter
- c.585+6T>C Single submitter
- c.586-2A>G Single submitter
- c.655-1G>A Single submitter
- c.777+3A>G Single submitter
- c.777+8A>G Single submitter
- c.778-18T>A Single submitter
- c.850-19A>G Single submitter
- c.850-3T>C Single submitter
- p.Ala113Pro Single submitter ⚠
- p.Ala152Asp Single submitter ⚠
- p.Ala152Thr Single submitter ⚠
- p.Ala224Thr Single submitter ⚠
- p.Ala321Ser Single submitter ⚠
- p.Ala425Val Single submitter ⚠
- p.Ala4Val Single submitter ⚠
- p.Ala75fs Single submitter
- p.Ala92Ser Single submitter ⚠
- p.Arg100His Single submitter ⚠
- p.Arg123Pro Single submitter ⚠
- p.Arg245His Single submitter
- p.Arg319Gly Single submitter
- p.Arg331Gln Single submitter ⚠
- p.Arg344fs Single submitter
- p.Arg344Ile Single submitter ⚠
- p.Arg55Cys Single submitter ⚠
- p.Arg55His Single submitter ⚠
- p.Arg62Gln Single submitter ⚠
- p.Arg71Ter Single submitter Fetal anomalies with a likely genetic cause
- p.Asn258Ser Single submitter ⚠
- p.Asn65Ile Single submitter ⚠
- p.Asn96Ser Single submitter ⚠
- p.Asp181Gly Single submitter ⚠
- p.Asp191Val Single submitter ⚠
- p.Asp200Glu Single submitter ⚠
- p.Asp207His Single submitter ⚠
- p.Asp219Gly Single submitter ⚠
- p.Asp260Ala Single submitter ⚠
- p.Asp266Asn Single submitter ⚠
- p.Asp46Glu Single submitter ⚠
- p.Cys145Ser Single submitter ⚠
- p.Gln322Glu Single submitter ⚠
- p.Gln322Ter Single submitter
- p.Gln324Lys Single submitter ⚠
- p.Gln378fs Single submitter
- p.Gln378His Single submitter
- p.Glu103Gln Single submitter ⚠
- p.Glu14Lys Single submitter ⚠
- p.Glu14Val Single submitter ⚠
- p.Glu174Lys Single submitter ⚠
- p.Glu222Lys Single submitter ⚠
- p.Glu222Val Single submitter ⚠
- p.Glu238Ala Single submitter ⚠
- p.Glu23Gly Single submitter ⚠
- p.Glu23Lys Single submitter ⚠
- p.Glu298Gly Single submitter
- p.Glu317Lys Single submitter ⚠
- p.Glu389Lys Single submitter ⚠
- p.Glu398Gly Single submitter ⚠
- p.Glu58Val Single submitter ⚠
- p.Glu82Lys Single submitter ⚠
- p.Gly22Ser Single submitter ⚠
- p.Gly35fs Single submitter
- p.Gly364Ser Single submitter ⚠
- p.His39Arg Single submitter ⚠
- p.Ile206Thr Single submitter ⚠
- p.Ile229Thr Single submitter ⚠
- p.Ile254Val Single submitter ⚠
- p.Ile293Val Single submitter ⚠
- p.Ile392Val Single submitter ⚠
- p.Ile394Thr Single submitter ⚠
- p.Ile95fs Single submitter
- p.Ile95Val Single submitter ⚠
- p.Leu230fs Single submitter
- p.Leu250Met Single submitter ⚠
- p.Leu380Ser Single submitter ⚠
- p.Lys280Gln Single submitter ⚠
- p.Lys305Asn Single submitter ⚠
- p.Lys305Met Single submitter ⚠
- p.Lys355fs Single submitter
- p.Lys384Arg Single submitter ⚠
- p.Lys50Asn Single submitter ⚠
- p.Met367Leu Single submitter ⚠
- p.Met390Val Single submitter orofaciodigital syndrome 18 ⚠
- p.Met40fs Single submitter
- p.Met412Val Single submitter ⚠
- p.Phe41Leu Single submitter ⚠
- p.Pro248Leu Single submitter ⚠
- p.Pro424Arg Single submitter ⚠
- p.Ser124Ter Single submitter
- p.Ser177Arg Single submitter ⚠
- p.Thr186_Leu187del Single submitter
- p.Thr199Arg Single submitter ⚠
- p.Thr233Ala Single submitter ⚠
- p.Thr253Lys Single submitter ⚠
- p.Thr253Met Single submitter ⚠
- p.Thr256Ile Single submitter ⚠
- p.Thr282Ser Single submitter ⚠
- p.Thr2Ser Single submitter ⚠
- p.Thr343Ala Single submitter ⚠
- p.Thr426Lys Single submitter ⚠
- p.Trp261Ter Single submitter
- p.Tyr140Cys Single submitter ⚠
- p.Tyr318Cys Single submitter
- p.Tyr332Cys Single submitter ⚠
- p.Tyr429Asp Single submitter ⚠
- p.Tyr429fs Single submitter
- p.Tyr56Cys Single submitter ⚠
- p.Val170Ile Single submitter ⚠
- p.Val246Ile Single submitter ⚠
- p.Val246Leu Single submitter ⚠
- p.Val388Ile Single submitter ⚠
- p.Val42Met Single submitter ⚠
- p.Val43Ala Single submitter ⚠
- p.Val43Met Single submitter ⚠
- p.Ala155Ser No assertion criteria orofaciodigital syndrome 18 ⚠