IFT80 — 472 ClinVar variants

All ClinVar germline IFT80 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 179 flagged for review →

19 Pathogenic · 4 Pathogenic/Likely pathogenic · 18 Likely pathogenic · 25 Conflicting · 26 Benign · 10 Benign/Likely benign · 135 Likely benign · 235 Uncertain significance

Full IFT80 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 179

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 129

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 43

The independent predictors disagree with each other — read with care.

All IFT80 variants

Pathogenic 19

Pathogenic/Likely pathogenic 4

Likely pathogenic 18

  • c.1152-1G>C Single submitter Jeune syndrome
  • c.1380+1G>T Single submitter asphyxiating thoracic dystrophy 2
  • c.1380+2del Single submitter Jeune syndrome
  • c.1516+1G>C Single submitter Jeune syndrome
  • c.1664+1G>A Single submitter Jeune syndrome
  • c.259+1G>T Single submitter asphyxiating thoracic dystrophy 2
  • c.370+2T>G Single submitter asphyxiating thoracic dystrophy 2
  • c.778-1G>A Single submitter IFT80-related disorder
  • c.957+1G>A Single submitter Jeune syndrome
  • p.Gly683Val Single submitter asphyxiating thoracic dystrophy 2
  • p.Ile665fs Single submitter asphyxiating thoracic dystrophy 2
  • p.Leu182fs Single submitter asphyxiating thoracic dystrophy 2
  • p.Leu252fs Single submitter asphyxiating thoracic dystrophy 2
  • p.Leu549del Single submitter asphyxiating thoracic dystrophy 2
  • p.Lys306Ter Single submitter IFT80-related disorder
  • p.Met1Val Single submitter asphyxiating thoracic dystrophy 2
  • p.Pro366fs Single submitter asphyxiating thoracic dystrophy 2
  • p.Thr83fs Single submitter asphyxiating thoracic dystrophy 2

Conflicting classifications of pathogenicity 25

Benign 26

Benign/Likely benign 10

Likely benign 135

Uncertain significance 235