ISG15 — 152 ClinVar variants

All ClinVar germline ISG15 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 64 flagged for review →

2 Pathogenic · 1 Pathogenic/Likely pathogenic · 1 Likely pathogenic · 7 Conflicting · 4 Benign · 9 Benign/Likely benign · 56 Likely benign · 72 Uncertain significance

Full ISG15 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 64

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 5

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 50

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 9

The independent predictors disagree with each other — read with care.

All ISG15 variants

Pathogenic 2

  • p.Gln55Ter No assertion criteria Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu114fs No assertion criteria Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency

Pathogenic/Likely pathogenic 1

  • c.4-1G>A Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency

Likely pathogenic 1

  • p.Glu127Ter Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency

Conflicting classifications of pathogenicity 7

  • p.Ala53Val Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Arg99Gln Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly141Ser Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly51Cys Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Leu28Gln Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Ser24= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ser24Leu Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠

Benign 4

  • c.-108_-107insA Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.-33T>C Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.-84C>G Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.4-129G>A Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency

Benign/Likely benign 9

  • p.Ala11= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Asp79= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gly157= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu73= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ser21Asn Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ser26= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ser83Asn Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Thr159= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Val98= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency

Likely benign 56

  • p.Ala30= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Asp119= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gln134= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gly162= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu135= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu65= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Phe126= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ser50= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Tyr96= Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.3+16C>T Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.3+18G>T Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.4-11G>T Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.4-4G>T Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.4-5T>G Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.4-6C>A Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.4-8G>A Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.4-9C>T Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.-21CACAGCC[2] Single submitter
  • p.Ala53= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Arg164Pro Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Arg57= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Asn13= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Asn151= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Cys78= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gln102= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gly113= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gly113Arg Single submitter
  • p.Gly12= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gly141= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gly2= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.His39= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ile36= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu107= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu124= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu137= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu142= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu28= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu45= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Leu82= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Lys143= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Pro136= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Pro49= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Pro59= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Pro67= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ser112= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ser69= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ter166= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Thr101= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Thr103= Single submitter
  • p.Thr147= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Thr6= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Thr70= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Tyr140= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Val75= Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • c.-21CACAGCC[1] No assertion criteria ISG15-related disorder
  • c.*4C>A No assertion criteria ISG15-related disorder

Uncertain significance 72

  • p.Ala11Val Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Arg155fs Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Arg164Trp Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Arg44His Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Arg92His Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Asp120Asn Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly158Ser Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly51Ser Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly68Ser Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly91Ser Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.His48Tyr Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Ile32Asn Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Met150Val Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Phe149Ser Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Pro49Leu Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Pro81Leu Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Ser22Phe Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Thr6Met Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Thr70Met Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Val148Met Multiple submitters Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • c.3+5G>C Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ala105Asp Single submitter ⚠
  • p.Ala105Thr Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Ala11Thr Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Ala40Thr Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Ala46Asp Single submitter ⚠
  • p.Arg153His Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Arg155Trp Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Arg164Gln Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Arg99Trp Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Asp119Asn Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gln118Ter Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gln134Lys Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gln134Ter Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gln34Glu Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gln42Arg Single submitter ⚠
  • p.Glu127Lys Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Glu139fs Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Glu14Val Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Glu97Lys Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly116Val Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Gly128Glu Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly138Arg Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly141Val Single submitter ⚠
  • p.Gly158Arg Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Gly163Arg Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Leu107Val Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Leu85Pro Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Met23Val Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Phe149fs Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Pro130Thr Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Pro136Leu Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Pro144Leu Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Pro161_Gly162insValPro Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Pro59Ser Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Pro67Ser Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Ser165Asn Single submitter ⚠
  • p.Ser165Thr Single submitter ⚠
  • p.Ser83_Leu85del Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Ser83Arg Single submitter ⚠
  • p.Thr101Ala Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Thr101Lys Single submitter ⚠
  • p.Thr101Met Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Thr147Ile Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Thr6Lys Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Trp123Cys Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Tyr96fs Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency
  • p.Tyr96Phe Single submitter ⚠
  • p.Val104Met Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Val25Leu Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Val38Met Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠
  • p.Val86Met Single submitter Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency ⚠