KARS1 — 539 ClinVar variants

All ClinVar germline KARS1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 223 flagged for review →

14 Pathogenic · 4 Pathogenic/Likely pathogenic · 15 Likely pathogenic · 32 Conflicting · 34 Benign · 17 Benign/Likely benign · 172 Likely benign · 251 Uncertain significance

Full KARS1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 223

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 20

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 155

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 155

Predictors split 48

The independent predictors disagree with each other — read with care.

All KARS1 variants

Pathogenic 14

Pathogenic/Likely pathogenic 4

  • p.Asn563Ile Multiple submitters
  • p.Lys41fs Multiple submitters leukoencephalopathy, progressive, infantile-onset, with or without deafness
  • p.Pro200Leu Multiple submitters KARS-related disorder
  • p.Thr559Met Multiple submitters leukoencephalopathy, progressive, infantile-onset, with or without deafness

Likely pathogenic 15

  • p.Arg230Ser Multiple submitters leukoencephalopathy, progressive, infantile-onset, with or without deafness
  • p.Pro505Arg Multiple submitters leukoencephalopathy, progressive, infantile-onset, with or without deafness
  • c.1253-1G>C Single submitter
  • c.63-2578C>G Single submitter KARS-related disorder
  • p.Arg393fs Single submitter KARS1-related disorder
  • p.Arg553Ter Single submitter
  • p.Arg80Cys Single submitter
  • p.Gln86Ter Single submitter Global developmental delay
  • p.Glu514Ter Single submitter
  • p.Glu8Ter Single submitter Inborn genetic diseases
  • p.Gly183Glu Single submitter KARS1-related disorder
  • p.Leu302Phe Single submitter
  • p.Leu443Pro Single submitter leukoencephalopathy, progressive, infantile-onset, with or without deafness
  • p.Phe461Cys Single submitter
  • p.Tyr373Ter Single submitter autosomal recessive nonsyndromic hearing loss 89

Conflicting classifications of pathogenicity 32

Benign 34

Benign/Likely benign 17

Likely benign 172

Uncertain significance 251