KCNA1 — 728 ClinVar variants

All ClinVar germline KCNA1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 325 flagged for review →

25 Pathogenic · 3 Pathogenic/Likely pathogenic · 19 Likely pathogenic · 20 Conflicting · 38 Benign · 21 Benign/Likely benign · 161 Likely benign · 441 Uncertain significance

Full KCNA1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 325

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 10

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 262

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 262

Predictors split 53

The independent predictors disagree with each other — read with care.

All KCNA1 variants

Pathogenic 25

Pathogenic/Likely pathogenic 3

  • p.Gly396Val Multiple submitters episodic kinesigenic dyskinesia
  • p.Ile262Thr Multiple submitters episodic ataxia type 1
  • p.Phe250del Multiple submitters Inborn genetic diseases

Likely pathogenic 19

Conflicting classifications of pathogenicity 20

Benign 38

  • c.-110G>A Multiple submitters episodic ataxia type 1
  • c.-638C>T Multiple submitters episodic ataxia type 1
  • c.*1524A>G Multiple submitters episodic ataxia type 1
  • c.*1681T>C Multiple submitters episodic ataxia type 1
  • c.*1927A>T Multiple submitters episodic ataxia type 1
  • c.*2333G>A Multiple submitters episodic ataxia type 1
  • c.*3062T>C Multiple submitters episodic ataxia type 1
  • c.*406C>T Multiple submitters episodic ataxia type 1
  • c.*4439C>T Multiple submitters episodic ataxia type 1
  • c.*5141G>A Multiple submitters episodic ataxia type 1
  • c.*5191G>A Multiple submitters episodic ataxia type 1
  • c.*786G>A Multiple submitters episodic ataxia type 1
  • c.*9G>A Multiple submitters episodic ataxia type 1
  • p.Cys228= Multiple submitters episodic ataxia type 1
  • p.Ser432= Multiple submitters episodic ataxia type 1
  • p.Thr480= Multiple submitters episodic ataxia type 1
  • c.-428C>T Single submitter episodic ataxia type 1
  • c.-731C>G Single submitter episodic ataxia type 1
  • c.-839C>T Single submitter episodic ataxia type 1
  • c.-959C>T Single submitter episodic ataxia type 1
  • c.*127A>C Single submitter episodic ataxia type 1
  • c.*1577A>T Single submitter episodic ataxia type 1
  • c.*1892C>T Single submitter episodic ataxia type 1
  • c.*2080G>A Single submitter episodic ataxia type 1
  • c.*2121T>C Single submitter episodic ataxia type 1
  • c.*2313C>T Single submitter episodic ataxia type 1
  • c.*2596A>T Single submitter episodic ataxia type 1
  • c.*2727C>T Single submitter episodic ataxia type 1
  • c.*2734G>A Single submitter episodic ataxia type 1
  • c.*3840G>A Single submitter episodic ataxia type 1
  • c.*4234A>G Single submitter episodic ataxia type 1
  • c.*4591T>G Single submitter episodic ataxia type 1
  • c.*4663G>A Single submitter episodic ataxia type 1
  • c.*517T>C Single submitter episodic ataxia type 1
  • c.*5209C>T Single submitter episodic ataxia type 1
  • c.*592C>A Single submitter episodic ataxia type 1
  • c.*947C>T Single submitter episodic ataxia type 1
  • p.Met1Val Single submitter episodic ataxia type 1

Benign/Likely benign 21

  • c.-1043C>T Multiple submitters episodic ataxia type 1
  • c.-134G>T Multiple submitters episodic ataxia type 1
  • c.-235C>A Multiple submitters episodic ataxia type 1
  • c.*1522C>G Multiple submitters episodic ataxia type 1
  • c.*189G>A Multiple submitters episodic ataxia type 1
  • c.*2005G>A Multiple submitters episodic ataxia type 1
  • c.*2123A>G Multiple submitters episodic ataxia type 1
  • c.*2174C>T Multiple submitters episodic ataxia type 1
  • c.*2245C>G Multiple submitters episodic ataxia type 1
  • c.*228A>C Multiple submitters episodic ataxia type 1
  • c.*2308C>G Multiple submitters episodic ataxia type 1
  • c.*3724C>T Multiple submitters episodic ataxia type 1
  • c.*4635G>C Multiple submitters episodic ataxia type 1
  • c.*5145T>C Multiple submitters episodic ataxia type 1
  • p.Arg131= Multiple submitters episodic ataxia type 1
  • p.Arg443Gly Multiple submitters Inborn genetic diseases
  • p.Glu79= Multiple submitters episodic ataxia type 1
  • p.Gly135= Multiple submitters episodic ataxia type 1
  • p.Leu144= Multiple submitters episodic ataxia type 1
  • p.Thr218= Multiple submitters episodic ataxia type 1
  • p.Tyr375= Multiple submitters episodic ataxia type 1

Likely benign 161

  • p.Ala14= Multiple submitters episodic ataxia type 1
  • p.Ala261= Multiple submitters episodic ataxia type 1
  • p.Ala349= Multiple submitters episodic ataxia type 1
  • p.Asn252= Multiple submitters episodic ataxia type 1
  • p.Asp194= Multiple submitters episodic ataxia type 1
  • p.Glu132= Multiple submitters episodic ataxia type 1
  • p.Gly6= Multiple submitters episodic ataxia type 1
  • p.Gly99= Multiple submitters episodic ataxia type 1
  • p.Leu156= Multiple submitters episodic ataxia type 1
  • p.Leu315= Multiple submitters episodic ataxia type 1
  • p.Leu339= Multiple submitters episodic ataxia type 1
  • p.Phe198= Multiple submitters episodic ataxia type 1
  • p.Phe234= Multiple submitters episodic ataxia type 1
  • p.Pro105= Multiple submitters episodic ataxia type 1
  • p.Pro165= Multiple submitters episodic ataxia type 1
  • p.Pro244= Multiple submitters episodic ataxia type 1
  • p.Ser287= Multiple submitters episodic ataxia type 1
  • p.Ser342= Multiple submitters episodic ataxia type 1
  • p.Ser354= Multiple submitters episodic ataxia type 1
  • p.Tyr80= Multiple submitters episodic ataxia type 1
  • c.-13C>A Single submitter
  • c.-18C>A Single submitter
  • c.*1242T>G Single submitter
  • c.*2488T>C Single submitter episodic ataxia type 1
  • p.Ala126= Single submitter episodic ataxia type 1
  • p.Ala170= Single submitter episodic ataxia type 1
  • p.Ala28= Single submitter episodic ataxia type 1
  • p.Ala289= Single submitter episodic ataxia type 1
  • p.Ala347= Single submitter episodic ataxia type 1
  • p.Ala366= Single submitter episodic ataxia type 1
  • p.Ala425= Single submitter episodic ataxia type 1
  • p.Ala476= Single submitter
  • p.Ala56= Single submitter episodic ataxia type 1
  • p.Arg295= Single submitter episodic ataxia type 1
  • p.Arg38= Single submitter episodic ataxia type 1
  • p.Arg417= Single submitter episodic ataxia type 1
  • p.Arg469= Single submitter episodic ataxia type 1
  • p.Arg474= Single submitter episodic ataxia type 1
  • p.Arg86= Single submitter episodic ataxia type 1
  • p.Asn215= Single submitter episodic ataxia type 1
  • p.Asn477= Single submitter episodic ataxia type 1
  • p.Asn487= Single submitter episodic ataxia type 1
  • p.Asn8= Single submitter episodic ataxia type 1
  • p.Asn85= Single submitter episodic ataxia type 1
  • p.Asp133= Single submitter episodic ataxia type 1
  • p.Asp258= Single submitter episodic ataxia type 1
  • p.Asp29= Single submitter episodic ataxia type 1
  • p.Asp29Glu Single submitter Inborn genetic diseases
  • p.Asp31= Single submitter episodic ataxia type 1
  • p.Asp438= Single submitter
  • p.Cys36= Single submitter episodic ataxia type 1
  • p.Cys485= Single submitter episodic ataxia type 1
  • p.Gln150= Single submitter episodic ataxia type 1
  • p.Gln20= Single submitter episodic ataxia type 1
  • p.Gln27Pro Single submitter Inborn genetic diseases
  • p.Glu140= Single submitter episodic ataxia type 1
  • p.Glu141= Single submitter episodic ataxia type 1
  • p.Glu146= Single submitter episodic ataxia type 1
  • p.Glu161= Single submitter episodic ataxia type 1
  • p.Glu283= Single submitter episodic ataxia type 1
  • p.Glu418= Single submitter
  • p.Glu420= Single submitter episodic ataxia type 1
  • p.Glu459= Single submitter episodic ataxia type 1
  • p.Gly200= Single submitter episodic ataxia type 1
  • p.Gly311= Single submitter episodic ataxia type 1
  • p.Gly316= Single submitter episodic ataxia type 1
  • p.Gly336= Single submitter episodic ataxia type 1
  • p.Gly374= Single submitter episodic ataxia type 1
  • p.Gly389= Single submitter episodic ataxia type 1
  • p.Gly421= Single submitter episodic ataxia type 1
  • p.His203= Single submitter episodic ataxia type 1
  • p.His308= Single submitter episodic ataxia type 1
  • p.His33= Single submitter episodic ataxia type 1
  • p.His416= Single submitter episodic ataxia type 1
  • p.His429= Single submitter episodic ataxia type 1
  • p.His467= Single submitter episodic ataxia type 1
  • p.Ile117= Single submitter episodic ataxia type 1
  • p.Ile137= Single submitter episodic ataxia type 1
  • p.Ile169= Single submitter episodic ataxia type 1
  • p.Ile205= Single submitter episodic ataxia type 1
  • p.Ile223= Single submitter episodic ataxia type 1
  • p.Ile229= Single submitter episodic ataxia type 1
  • p.Ile230= Single submitter episodic ataxia type 1
  • p.Ile257= Single submitter episodic ataxia type 1
  • p.Ile290= Single submitter episodic ataxia type 1
  • p.Ile294= Single submitter episodic ataxia type 1
  • p.Ile330= Single submitter episodic ataxia type 1
  • p.Ile335= Single submitter episodic ataxia type 1
  • p.Ile383= Single submitter episodic ataxia type 1
  • p.Ile394= Single submitter episodic ataxia type 1
  • p.Ile407= Single submitter episodic ataxia type 1
  • p.Ile457= Single submitter episodic ataxia type 1
  • p.Ile465= Single submitter episodic ataxia type 1
  • p.Leu155= Single submitter episodic ataxia type 1
  • p.Leu186= Single submitter episodic ataxia type 1
  • p.Leu192= Single submitter episodic ataxia type 1
  • p.Leu269= Single submitter episodic ataxia type 1
  • p.Leu296= Single submitter episodic ataxia type 1
  • p.Leu328= Single submitter episodic ataxia type 1
  • p.Leu333= Single submitter episodic ataxia type 1
  • p.Leu398= Single submitter episodic ataxia type 1
  • p.Leu402= Single submitter episodic ataxia type 1
  • p.Leu427= Single submitter episodic ataxia type 1
  • p.Leu428= Single submitter episodic ataxia type 1
  • p.Leu63= Single submitter episodic ataxia type 1
  • p.Leu93= Single submitter episodic ataxia type 1
  • p.Lys118= Single submitter episodic ataxia type 1
  • p.Lys129= Single submitter episodic ataxia type 1
  • p.Lys196= Single submitter episodic ataxia type 1
  • p.Lys451= Single submitter episodic ataxia type 1
  • p.Lys53= Single submitter episodic ataxia type 1
  • p.Phe136= Single submitter episodic ataxia type 1
  • p.Phe157= Single submitter episodic ataxia type 1
  • p.Phe222= Single submitter episodic ataxia type 1
  • p.Phe303= Single submitter episodic ataxia type 1
  • p.Phe363= Single submitter episodic ataxia type 1
  • p.Phe58= Single submitter episodic ataxia type 1
  • p.Phe89= Single submitter episodic ataxia type 1
  • p.Pro145= Single submitter episodic ataxia type 1
  • p.Pro16= Single submitter episodic ataxia type 1
  • p.Pro160= Single submitter episodic ataxia type 1
  • p.Pro19= Single submitter episodic ataxia type 1
  • p.Pro190= Single submitter episodic ataxia type 1
  • p.Pro360= Single submitter episodic ataxia type 1
  • p.Pro403= Single submitter episodic ataxia type 1
  • p.Ser114= Single submitter episodic ataxia type 1
  • p.Ser163= Single submitter episodic ataxia type 1
  • p.Ser173= Single submitter episodic ataxia type 1
  • p.Ser233= Single submitter episodic ataxia type 1
  • p.Ser309= Single submitter episodic ataxia type 1
  • p.Ser341= Single submitter episodic ataxia type 1
  • p.Ser369= Single submitter episodic ataxia type 1
  • p.Ser390= Single submitter episodic ataxia type 1
  • p.Ser409= Single submitter episodic ataxia type 1
  • p.Ser44= Single submitter episodic ataxia type 1
  • p.Ser446= Single submitter episodic ataxia type 1
  • p.Ser98= Single submitter episodic ataxia type 1
  • p.Thr188= Single submitter episodic ataxia type 1
  • p.Thr2= Single submitter episodic ataxia type 1
  • p.Thr201= Single submitter episodic ataxia type 1
  • p.Thr209= Single submitter
  • p.Thr247= Single submitter episodic ataxia type 1
  • p.Thr268= Single submitter episodic ataxia type 1
  • p.Thr271= Single submitter episodic ataxia type 1
  • p.Thr286= Single submitter episodic ataxia type 1
  • p.Thr371= Single submitter
  • p.Thr382= Single submitter episodic ataxia type 1
  • p.Thr475= Single submitter episodic ataxia type 1
  • p.Thr479= Single submitter episodic ataxia type 1
  • p.Thr54= Single submitter episodic ataxia type 1
  • p.Tyr120= Single submitter episodic ataxia type 1
  • p.Tyr149= Single submitter episodic ataxia type 1
  • p.Tyr379= Single submitter episodic ataxia type 1
  • p.Tyr468= Single submitter episodic ataxia type 1
  • p.Tyr72= Single submitter
  • p.Val108= Single submitter episodic ataxia type 1
  • p.Val168= Single submitter episodic ataxia type 1
  • p.Val172= Single submitter episodic ataxia type 1
  • p.Val408= Single submitter episodic ataxia type 1
  • p.Val486= Single submitter episodic ataxia type 1
  • p.Val9= Single submitter episodic ataxia type 1

Uncertain significance 441

Showing the top 300 by review status; the full set is in the sitemap.