KIF11 — 1083 ClinVar variants

All ClinVar germline KIF11 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 325 flagged for review →

117 Pathogenic · 16 Pathogenic/Likely pathogenic · 76 Likely pathogenic · 38 Conflicting · 74 Benign · 34 Benign/Likely benign · 364 Likely benign · 364 Uncertain significance

Full KIF11 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 325

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 22

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 1

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 260

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 260

Predictors split 42

The independent predictors disagree with each other — read with care.

All KIF11 variants

Pathogenic 117

  • c.2548-1G>A Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.308+1G>A Multiple submitters Inborn genetic diseases
  • c.77+1G>A Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.790-1G>T Multiple submitters Microcephaly with or without chorioretinopathy, lymphedema or intellectual disability (MCLID)
  • p.Arg53Ter Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Arg83Ter Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Asn899fs Multiple submitters Inborn genetic diseases
  • p.Gln744Ter Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln755Ter Multiple submitters
  • p.Gln928Ter Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Glu13fs Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gly397Ter Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.His768fs Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.His800_Ser801insTer Multiple submitters
  • p.Leu347fs Multiple submitters KIF11-related disorder
  • p.Lys146Ter Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Lys207fs Multiple submitters Inborn genetic diseases
  • p.Thr148fs Multiple submitters
  • p.Tyr211fs Multiple submitters
  • p.Tyr934Ter Multiple submitters
  • c.1129-2A>G Single submitter
  • c.(1217+1_1218-1 Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.1702+1G>A Single submitter
  • c.2160+1G>T Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.2267+1G>A Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.2771-1G>C Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.387+1G>A Single submitter
  • c.388-2A>T Single submitter
  • c.699-7_705del Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ala353fs Single submitter
  • p.Ala35fs Single submitter
  • p.Ala373fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ala391fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ala496fs Single submitter
  • p.Ala9fs Single submitter
  • p.Arg384_Leu385insTer Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Arg387Ter Single submitter KIF11-related disorder
  • p.Arg393fs Single submitter
  • p.Arg784fs Single submitter
  • p.Asn122fs Single submitter
  • p.Asn434fs Single submitter
  • p.Asn651fs Single submitter
  • p.Asn684Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Asn763fs Single submitter
  • p.Asn895fs Single submitter
  • p.Asp920fs Single submitter
  • p.Gln142Ter Single submitter
  • p.Gln212Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln290Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln367fs Single submitter
  • p.Gln602Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln770Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln788Ter Single submitter
  • p.Gln817Ter Single submitter
  • p.Gln832Ter Single submitter
  • p.Gln853Ter Single submitter
  • p.Gln883_Met884insTer Single submitter
  • p.Gln883Ter Single submitter retinal disorder
  • p.Gln894fs Single submitter
  • p.Glu201fs Single submitter
  • p.Glu364Ter Single submitter
  • p.Glu470Ter Single submitter KIF11-related disorder
  • p.Glu623Ter Single submitter
  • p.Glu674fs Single submitter
  • p.Glu795Ter Single submitter
  • p.Glu809fs Single submitter
  • p.Glu841fs Single submitter
  • p.Glu92Ter Single submitter
  • p.Glu980Ter Single submitter
  • p.His308fs Single submitter
  • p.His38fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.His563fs Single submitter
  • p.Ile196fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ile811fs Single submitter KIF11-related disorder
  • p.Leu160fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Leu548fs Single submitter
  • p.Leu548Ter Single submitter
  • p.Leu959fs Single submitter
  • p.Leu959Ter Single submitter
  • p.Lys315fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Lys564fs Single submitter
  • p.Lys702fs Single submitter
  • p.Lys930Ter Single submitter
  • p.Met1fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Met1Val Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Phe102fs Single submitter
  • p.Phe113fs Single submitter
  • p.Phe658fs Single submitter
  • p.Phe767fs Single submitter KIF11-related disorder
  • p.Pro27fs Single submitter
  • p.Pro922fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Pro974= Single submitter microcephaly
  • p.Ser155fs Single submitter
  • p.Ser348fs Single submitter
  • p.Ser574fs Single submitter
  • p.Ser576fs Single submitter
  • p.Ser835_Ser836insTer Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ser858Ter Single submitter
  • p.Ser931fs Single submitter
  • p.Thr203fs Single submitter
  • p.Thr590fs Single submitter
  • p.Thr713fs Single submitter
  • p.Thr926fs Single submitter
  • p.Tyr311Ter Single submitter
  • p.Val156fs Single submitter
  • p.Val562fs Single submitter
  • p.Val562Ter Single submitter
  • p.Val620fs Single submitter
  • p.Val850_Val851insTer Single submitter
  • p.Val85fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Val978_Glu979insTer Single submitter retinitis pigmentosa
  • c.2547+2T>C No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.790-1G>A No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln531fs No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln622Ter No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln781Ter No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Tyr231Ter No assertion criteria inherited retinal dystrophy

Pathogenic/Likely pathogenic 16

  • c.2161-1G>A Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.388-1G>C Multiple submitters KIF11-related disorder
  • c.574-2A>G Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Arg26Gly Multiple submitters
  • p.Arg312Ter Multiple submitters Neurodevelopmental delay
  • p.Arg47Ter Multiple submitters inherited retinal dystrophy
  • p.Arg732fs Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Asn838fs Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln720Ter Multiple submitters
  • p.Glu814fs Multiple submitters KIF11-related disorder
  • p.Gly427fs Multiple submitters
  • p.Lys771fs Multiple submitters microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Met1Thr Multiple submitters
  • p.Met726fs Multiple submitters KIF11-related disorder
  • p.Ser812fs Multiple submitters KIF11-related disorder
  • p.Trp127Ter No assertion criteria Syndromic retinitis pigmentosa

Likely pathogenic 76

  • c.1305+1G>A Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.1495-1G>C Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.1495-7A>G Single submitter KIF11-related disorder
  • c.1702+1del Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.1703-1G>A Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.1875+1G>C Single submitter KIF11-related disorder
  • c.2160+1del Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.2161-2A>C Single submitter
  • c.2267+4del Single submitter
  • c.2267+5G>C Single submitter
  • c.2547+1G>A Single submitter KIF11-related disorder
  • c.2548-1G>T Single submitter
  • c.2548-2A>T Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.2771-1G>A Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.574-1G>A Single submitter
  • c.699-1G>C Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.789+1G>T Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Arg119fs Single submitter
  • p.Arg234Cys Single submitter KIF11-related disorder
  • p.Arg26Thr Single submitter KIF11-related disorder
  • p.Arg732Ter Single submitter
  • p.Arg825fs Single submitter KIF11-related disorder
  • p.Asn527Ile Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability ⚠
  • p.Asn685fs Single submitter KIF11-related disorder
  • p.Asn910fs Single submitter KIF11-related disorder
  • p.Asp322fs Single submitter KIF11-related disorder
  • p.Asp975fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln183Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln321Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln449Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln556Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gln701Ter Single submitter KIF11-related disorder
  • p.Glu402Ter Single submitter KIF11-related disorder
  • p.Glu505fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Glu637Ter Single submitter KIF11-related disorder
  • p.Glu814Ter Single submitter KIF11-related disorder
  • p.Glu897Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Gly868fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.His141Leu Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.His354fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.His687fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ile101fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ile213_Leu214insTer Single submitter KIF11-related disorder
  • p.Ile375del Single submitter
  • p.Ile423fs Single submitter KIF11-related disorder
  • p.Ile714fs Single submitter KIF11-related disorder
  • p.Ile743fs Single submitter KIF11-related disorder
  • p.Leu293delinsLysLeuGluIleTer Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Leu30Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Leu385fs Single submitter
  • p.Leu385Ter Single submitter KIF11-related disorder
  • p.Leu412Ter Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Leu896Pro Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability ⚠
  • p.Leu948del Single submitter
  • p.Lys257fs Single submitter neurodevelopmental disorder
  • p.Lys48fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Lys60fs Single submitter KIF11-related disorder
  • p.Lys673fs Single submitter KIF11-related disorder
  • p.Lys799Ter Single submitter KIF11-related disorder
  • p.Phe102Val Single submitter KIF11-related disorder
  • p.Ser646fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ser992fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Thr126fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Thr222fs Single submitter KIF11-related disorder
  • p.Thr242fs Single submitter KIF11-related disorder
  • p.Tyr164fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Tyr378Ter Single submitter KIF11-related disorder
  • p.Tyr66Ter Single submitter KIF11-related disorder
  • p.Val158fs Single submitter microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.2268-1G>A No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • c.308+2dup No assertion criteria inherited retinal dystrophy
  • p.Asp177fs No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Glu820Ter No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Glu849Ter No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
  • p.Ile288fs No assertion criteria Retinal dysplasia
  • p.Ile299Val No assertion criteria microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability

Conflicting classifications of pathogenicity 38

Benign 74

Benign/Likely benign 34

Likely benign 364

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 364

Showing the top 300 by review status; the full set is in the sitemap.