KL — 562 ClinVar variants

All ClinVar germline KL variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 298 flagged for review →

1 Likely pathogenic · 19 Conflicting · 33 Benign · 13 Benign/Likely benign · 130 Likely benign · 366 Uncertain significance

Full KL gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 298

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 239

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 239

Predictors split 52

The independent predictors disagree with each other — read with care.

All KL variants

Likely pathogenic 1

  • p.His83fs Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3

Conflicting classifications of pathogenicity 19

  • p.Ala249= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Ala5= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Arg171Ser Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3 ⚠
  • p.Arg473= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Arg620= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Arg649Cys Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3 ⚠
  • p.Asn304Ser Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3 ⚠
  • p.Asp876Asn Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3 ⚠
  • p.Gln396= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Glu625Lys Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3 ⚠
  • p.Gly205Asp Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3 ⚠
  • p.Gly766= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.His193Arg Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3 ⚠
  • p.Leu753= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Ser150= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Thr542= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Thr958= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Thr968= Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Val331Ile Single submitter ⚠

Benign 33

  • c.1331-39G>A Multiple submitters
  • c.1599+205C>T Multiple submitters
  • c.2701+22T>A Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • c.2702-110T>C Multiple submitters
  • c.2702-59dup Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 1
  • c.820-144A>G Multiple submitters
  • c.820-46C>G Multiple submitters
  • c.820-75T>G Multiple submitters
  • c.820-79C>T Multiple submitters
  • p.Ala107Val Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Ala749= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Arg47Gln Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Asn873= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Asn896= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Asp91= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Cys370Ser Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Gly469= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.His589= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Leu109Arg Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Leu31= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Lys385= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Phe352Val Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Tyr1003Cys Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • c.1330+11G>A Single submitter
  • c.1330+143T>G Single submitter
  • c.1331-195A>G Single submitter
  • c.2702-182C>T Single submitter
  • c.820-211G>A Single submitter
  • c.820-236C>T Single submitter
  • c.*1286A>G Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • c.*1619T>C Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • c.*543G>A Single submitter tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Gly655= Single submitter

Benign/Likely benign 13

  • p.Ala162= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Ala203Ser Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Ala457= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Arg179= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Arg199Cys Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3 ⚠
  • p.Arg29= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Asn131Lys Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Gln844= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Gly766Ser Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Leu109= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Pro514Ser Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Tyr129= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3
  • p.Tyr531= Multiple submitters tumoral calcinosis, hyperphosphatemic, familial, 3

Likely benign 130

Uncertain significance 366

Showing the top 300 by review status; the full set is in the sitemap.