KLF6 — 26 ClinVar variants
All ClinVar germline KLF6 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 19 flagged for review →
6 Pathogenic · 3 Benign · 1 Benign/Likely benign · 1 Likely benign · 15 Uncertain significance
Full KLF6 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 19
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 4
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
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KLF6 p.Ala123Asp
Pathogenic
No assertion criteria
Prostate cancer, somatic
-
KLF6 p.Leu169Pro
Pathogenic
No assertion criteria
Prostate cancer, somatic
-
KLF6 p.Ser116Pro
Pathogenic
No assertion criteria
Prostate cancer, somatic
-
KLF6 p.Ser155Arg
Pathogenic
No assertion criteria
gastric cancer
Predictors lean, ClinVar uncertain 12
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- KLF6 p.Arg156Lys Uncertain significance Single submitter
- KLF6 p.Arg201Trp Uncertain significance Single submitter
- KLF6 p.Gly178Glu Uncertain significance Single submitter
- KLF6 p.Ile68Met Uncertain significance Single submitter
- KLF6 p.Leu90Val Uncertain significance Single submitter
- KLF6 p.Lys80Arg Uncertain significance Single submitter
- KLF6 p.Ser142Tyr Uncertain significance Single submitter
- KLF6 p.Ser8Thr Uncertain significance Single submitter
- KLF6 p.Ser92Thr Uncertain significance Single submitter
- KLF6 p.Thr145Ile Uncertain significance Single submitter
- KLF6 p.Thr225Ala Uncertain significance Single submitter
- KLF6 p.Thr65Ser Uncertain significance Single submitter
Predictors split 3
The independent predictors disagree with each other — read with care.
All KLF6 variants
Pathogenic 6
- p.Ala123Asp No assertion criteria Prostate cancer, somatic ⚠
- p.Leu169Pro No assertion criteria Prostate cancer, somatic ⚠
- p.Ser116Pro No assertion criteria Prostate cancer, somatic ⚠
- p.Ser137Ter No assertion criteria Prostate cancer, somatic
- p.Ser155Arg No assertion criteria gastric cancer ⚠
- p.Trp64Arg No assertion criteria Prostate cancer, somatic ⚠
Benign 3
- p.Ser77= Multiple submitters
- p.Val165Met Multiple submitters
- p.Arg198= Single submitter
Benign/Likely benign 1
- p.Arg201= Multiple submitters hypotensive disorder
Likely benign 1
- p.Leu275= Single submitter
Uncertain significance 15
- p.Arg156Lys Single submitter ⚠
- p.Arg201Trp Single submitter ⚠
- p.Asp190Tyr Single submitter
- p.Gly178Glu Single submitter ⚠
- p.Ile68Met Single submitter ⚠
- p.Leu13Val Single submitter ⚠
- p.Leu90Val Single submitter ⚠
- p.Lys80Arg Single submitter ⚠
- p.Pro26Gln Single submitter ⚠
- p.Ser142Tyr Single submitter ⚠
- p.Ser8Thr Single submitter ⚠
- p.Ser92Thr Single submitter ⚠
- p.Thr145Ile Single submitter ⚠
- p.Thr225Ala Single submitter ⚠
- p.Thr65Ser Single submitter ⚠