KLK4 — 61 ClinVar variants
All ClinVar germline KLK4 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 25 flagged for review →
4 Pathogenic · 1 Pathogenic/Likely pathogenic · 2 Likely pathogenic · 19 Benign · 1 Benign/Likely benign · 5 Likely benign · 29 Uncertain significance
Full KLK4 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 25
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 20
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
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KLK4 p.Pro227Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
KLK4 p.Ala114Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ala138Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ala4Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ala99Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Asn169Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Asn214Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Cys148Phe
Uncertain significance
Single submitter
amelogenesis imperfecta type 2A1
-
KLK4 p.Cys148Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Glu35Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Glu98Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Gly194Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- KLK4 p.Gly80Arg Uncertain significance Single submitter
-
KLK4 p.Met50Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Pro162Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Pro234Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ser171Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ser207Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ser22Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Val233Met
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 5
The independent predictors disagree with each other — read with care.
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KLK4 p.Gln199Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ile247Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ile247Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Ser85Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
KLK4 p.Tyr182Cys
Uncertain significance
Single submitter
Inborn genetic diseases
All KLK4 variants
Pathogenic 4
- p.Leu211fs Multiple submitters amelogenesis imperfecta type 2A1
- p.Cys213Arg No assertion criteria amelogenesis imperfecta
- p.Gly82fs No assertion criteria amelogenesis imperfecta type 2A1
- p.Ser57Ter No assertion criteria amelogenesis imperfecta
Pathogenic/Likely pathogenic 1
- p.Trp153Ter Multiple submitters KLK4-related disorders
Likely pathogenic 2
- c.224+2T>C Single submitter amelogenesis imperfecta type 2A1
- p.Ser207fs Single submitter amelogenesis imperfecta type 2A1
Benign 19
- c.224+182G>C Multiple submitters
- c.224+193T>C Multiple submitters
- c.224+92C>G Multiple submitters
- c.61+132C>G Multiple submitters
- c.61+144C>T Multiple submitters
- c.61+28T>A Multiple submitters
- c.612+227A>G Multiple submitters
- c.612+286C>T Multiple submitters
- c.612+50G>A Multiple submitters
- c.613-56C>T Multiple submitters
- p.Ala99= Multiple submitters
- p.Gln197= Multiple submitters
- p.Gly159Asp Multiple submitters
- p.Ser100= Multiple submitters
- p.Ser22= Multiple submitters
- p.Ser22Ala Multiple submitters
- c.224+142del Single submitter
- c.613-129T>C Single submitter
- c.62-169C>A Single submitter
Benign/Likely benign 1
- c.*19C>T Multiple submitters
Likely benign 5
- c.612+9G>C Single submitter
- p.Ala20Thr Single submitter Inborn genetic diseases
- p.Gln252= Single submitter
- p.Val251Ile Single submitter Inborn genetic diseases
- p.Gly13= No assertion criteria KLK4-related disorder
Uncertain significance 29
- p.Pro227Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ala114Val Single submitter Inborn genetic diseases ⚠
- p.Ala138Ser Single submitter Inborn genetic diseases ⚠
- p.Ala4Gly Single submitter Inborn genetic diseases ⚠
- p.Ala99Thr Single submitter Inborn genetic diseases ⚠
- p.Asn158Lys Single submitter Inborn genetic diseases
- p.Asn169Ser Single submitter Inborn genetic diseases ⚠
- p.Asn214Ser Single submitter Inborn genetic diseases ⚠
- p.Cys148Phe Single submitter amelogenesis imperfecta type 2A1 ⚠
- p.Cys148Tyr Single submitter Inborn genetic diseases ⚠
- p.Gln199Pro Single submitter Inborn genetic diseases ⚠
- p.Glu35Lys Single submitter Inborn genetic diseases ⚠
- p.Glu98Lys Single submitter Inborn genetic diseases ⚠
- p.Gly194Asp Single submitter Inborn genetic diseases ⚠
- p.Gly195Arg Single submitter Inborn genetic diseases
- p.Gly80Arg Single submitter ⚠
- p.His40Gln Single submitter Inborn genetic diseases
- p.Ile247Leu Single submitter Inborn genetic diseases ⚠
- p.Ile247Met Single submitter Inborn genetic diseases ⚠
- p.Met50Ile Single submitter Inborn genetic diseases ⚠
- p.Pro162Leu Single submitter Inborn genetic diseases ⚠
- p.Pro234Gln Single submitter Inborn genetic diseases ⚠
- p.Ser171Pro Single submitter Inborn genetic diseases ⚠
- p.Ser207Phe Single submitter Inborn genetic diseases ⚠
- p.Ser22Trp Single submitter Inborn genetic diseases ⚠
- p.Ser85Gly Single submitter Inborn genetic diseases ⚠
- p.Tyr182Cys Single submitter Inborn genetic diseases ⚠
- p.Val150Ala Single submitter Inborn genetic diseases
- p.Val233Met Single submitter Inborn genetic diseases ⚠