KRT16 — 176 ClinVar variants
All ClinVar germline KRT16 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 70 flagged for review →
15 Pathogenic · 2 Pathogenic/Likely pathogenic · 6 Likely pathogenic · 9 Conflicting · 18 Benign · 7 Benign/Likely benign · 48 Likely benign · 71 Uncertain significance
Full KRT16 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 70
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 7
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
KRT16 p.Ala180Val
Conflicting
Single submitter
pachyonychia congenita 1
-
KRT16 p.Arg409Trp
Conflicting
Single submitter
pachyonychia congenita 1
-
KRT16 p.Glu139Gln
Conflicting
Single submitter
Inborn genetic diseases
- KRT16 p.Glu257Lys Conflicting Single submitter
-
KRT16 p.Lys354Asn
Conflicting
Single submitter
pachyonychia congenita 1
-
KRT16 p.Phe102Leu
Conflicting
Single submitter
Inborn genetic diseases
-
KRT16 p.Thr215Ser
Conflicting
Single submitter
pachyonychia congenita 1
Predictors lean, ClinVar uncertain 40
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
KRT16 p.Arg290His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
KRT16 p.Glu442Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
KRT16 p.Ile458Thr
Uncertain significance
Multiple submitters
palmoplantar keratoderma, nonepidermolytic, focal 1
-
KRT16 p.Trp152Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
- KRT16 p.Ala211Val Uncertain significance Single submitter
- KRT16 p.Ala218Asp Uncertain significance Single submitter
- KRT16 p.Ala304Thr Uncertain significance Single submitter
-
KRT16 p.Ala355Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Ala42Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Ala433Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Ala61Val
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT16 p.Arg127Leu Uncertain significance Single submitter
- KRT16 p.Arg157Leu Uncertain significance Single submitter
-
KRT16 p.Arg224Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT16 p.Arg302Lys Uncertain significance Single submitter
- KRT16 p.Arg330His Uncertain significance Single submitter
- KRT16 p.Arg41Gly Uncertain significance Single submitter
-
KRT16 p.Arg441His
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT16 p.Arg453Leu Uncertain significance Single submitter
- KRT16 p.Arg456Gln Uncertain significance Single submitter
-
KRT16 p.Arg456Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Cys4Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Glu238Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Glu246Val
Uncertain significance
Single submitter
pachyonychia congenita 1
- KRT16 p.Glu362Asp Uncertain significance Single submitter
-
KRT16 p.Gly16Val
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT16 p.Gly21Arg Uncertain significance Single submitter
-
KRT16 p.Gly268Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT16 p.Gly49Ser Uncertain significance Single submitter
-
KRT16 p.Gly88Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.His427Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Leu112Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Lys253Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Pro166Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Ser17Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Ser33Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT16 p.Ser356Pro Uncertain significance Single submitter
-
KRT16 p.Ser356Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Thr266Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Val34Phe
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 23
The independent predictors disagree with each other — read with care.
- KRT16 p.Gly67Ser Benign/Likely benign Multiple submitters
- KRT16 p.Gly71Ala Benign Multiple submitters
-
KRT16 p.Ala415Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Arg136His
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Arg150Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT16 p.Arg157Trp Uncertain significance Single submitter
- KRT16 p.Arg213Trp Benign Single submitter
- KRT16 p.Arg225Gln Benign Single submitter
- KRT16 p.Arg284His Uncertain significance Single submitter
- KRT16 p.Arg418His Uncertain significance Single submitter
- KRT16 p.Arg419Cys Likely benign Single submitter
-
KRT16 p.Asp110Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Glu256Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Glu256Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Gly89Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT16 p.Met274Ile
Uncertain significance
Single submitter
pachyonychia congenita 1
-
KRT16 p.Met296Thr
Conflicting
Single submitter
Inborn genetic diseases
- KRT16 p.Ser165Arg Uncertain significance Single submitter
- KRT16 p.Ser448Leu Benign Single submitter
- KRT16 p.Ser451Leu Uncertain significance Single submitter
- KRT16 p.Ser73Asn Uncertain significance Single submitter
- KRT16 p.Thr334Met Uncertain significance Single submitter
-
KRT16 p.Val270Leu
Uncertain significance
Single submitter
Inborn genetic diseases
All KRT16 variants
Pathogenic 15
- p.Arg127Cys Multiple submitters KRT16-related disorder
- p.Arg127Gly Multiple submitters pachyonychia congenita 1
- p.Asn125Ser Multiple submitters KRT16-related disorder
- p.Arg127His Single submitter
- p.Asn125Asp Single submitter pachyonychia congenita 1
- p.Leu128Pro Single submitter
- p.Leu132Pro Single submitter pachyonychia congenita 1
- p.Met121Arg Single submitter
- p.Ser130del Single submitter pachyonychia congenita 1
- p.Ala415_Glu424delinsGlyGln No assertion criteria palmoplantar keratoderma, nonepidermolytic, focal 1
- p.Arg127Pro No assertion criteria pachyonychia congenita 1
- p.Asn125Gly No assertion criteria pachyonychia congenita 1
- p.Gln122Pro No assertion criteria pachyonychia congenita 1
- p.Leu124Arg No assertion criteria pachyonychia congenita 1
- p.Leu128Gln No assertion criteria pachyonychia congenita 1
Pathogenic/Likely pathogenic 2
- p.Leu124His Multiple submitters palmoplantar keratoderma, nonepidermolytic, focal 1
- p.Met121Thr Multiple submitters Ichthyosis and erythrokeratoderma
Likely pathogenic 6
- c.617_1053del Single submitter pachyonychia congenita 1
- p.Arg418_Arg419delinsThrSerSerGlyGly Single submitter
- p.Asn125Lys Single submitter pachyonychia congenita 1
- p.Gln122Arg Single submitter pachyonychia congenita 1
- p.Ser13_Met14insTer Single submitter palmoplantar keratoderma, nonepidermolytic, focal 1
- p.Thr2fs Single submitter
Conflicting classifications of pathogenicity 9
- c.933+18del Single submitter pachyonychia congenita 1
- p.Ala180Val Single submitter pachyonychia congenita 1 ⚠
- p.Arg409Trp Single submitter pachyonychia congenita 1 ⚠
- p.Glu139Gln Single submitter Inborn genetic diseases ⚠
- p.Glu257Lys Single submitter ⚠
- p.Lys354Asn Single submitter pachyonychia congenita 1 ⚠
- p.Met296Thr Single submitter Inborn genetic diseases ⚠
- p.Phe102Leu Single submitter Inborn genetic diseases ⚠
- p.Thr215Ser Single submitter pachyonychia congenita 1 ⚠
Benign 18
- c.1281-16T>C Multiple submitters pachyonychia congenita 1
- p.Ala186= Multiple submitters
- p.Arg418Cys Multiple submitters
- p.Arg41Cys Multiple submitters
- p.Gly71Ala Multiple submitters ⚠
- p.His208= Multiple submitters pachyonychia congenita 1
- p.Phe82= Multiple submitters
- c.933+10G>A Single submitter
- c.933+15C>T Single submitter
- c.933+9C>T Single submitter
- p.Ala233= Single submitter
- p.Arg196= Single submitter
- p.Arg213Trp Single submitter ⚠
- p.Arg225Gln Single submitter ⚠
- p.Arg330Leu Single submitter
- p.Leu112= Single submitter
- p.Lys148= Single submitter
- p.Ser448Leu Single submitter ⚠
Benign/Likely benign 7
- c.771+3A>G Multiple submitters
- p.Ala199Val Multiple submitters
- p.Arg390Cys Multiple submitters
- p.Gly23Ser Multiple submitters pachyonychia congenita 1
- p.Gly67Ser Multiple submitters ⚠
- p.Thr306Ala Multiple submitters
- p.Thr45= Multiple submitters
Likely benign 48
- p.Cys18Ter Multiple submitters
- p.Gly279= Multiple submitters
- p.Gly48= Multiple submitters
- p.Gly69= Multiple submitters
- p.Leu113fs Multiple submitters
- p.Leu309= Multiple submitters
- c.1060-5T>G Single submitter
- c.1281-18G>A Single submitter
- c.1328-18_1328-16del Single submitter
- c.771+9G>A Single submitter
- c.772-3C>T Single submitter
- c.933+13C>G Single submitter
- c.934-8T>C Single submitter
- p.Ala100Gly Single submitter
- p.Ala143= Single submitter
- p.Ala249= Single submitter
- p.Ala249Val Single submitter
- p.Ala36= Single submitter
- p.Arg337Trp Single submitter
- p.Arg419Cys Single submitter ⚠
- p.Arg453Cys Single submitter
- p.Arg453Ser Single submitter
- p.Arg55Cys Single submitter
- p.Asp303= Single submitter
- p.Cys18= Single submitter
- p.Cys62Tyr Single submitter
- p.Glu139Ter Single submitter palmoplantar keratoderma, nonepidermolytic, focal 1
- p.Gly267= Single submitter
- p.Gly366Asp Single submitter
- p.Gly66= Single submitter
- p.Gly70Ser Single submitter
- p.Ile20= Single submitter
- p.Leu459= Single submitter
- p.Phe467= Single submitter
- p.Phe94= Single submitter
- p.Ser323= Single submitter
- p.Ser373Ala Single submitter Inborn genetic diseases
- p.Ser465= Single submitter
- p.Thr266= Single submitter
- p.Thr416= Single submitter
- p.Tyr293= Single submitter
- p.Tyr46= Single submitter
- p.Val220Ile Single submitter Inborn genetic diseases
- p.Val34Ile Single submitter
- c.531+1G>A No assertion criteria EBV-positive nodal T- and NK-cell lymphoma
- c.934-9C>T No assertion criteria KRT16-related disorder
- p.Asn125= No assertion criteria KRT16-related disorder
- p.Cys62= No assertion criteria KRT16-related disorder
Uncertain significance 71
- p.Arg290His Multiple submitters Inborn genetic diseases ⚠
- p.Glu442Lys Multiple submitters Inborn genetic diseases ⚠
- p.Ile458Thr Multiple submitters palmoplantar keratoderma, nonepidermolytic, focal 1 ⚠
- p.Trp152Ser Multiple submitters Inborn genetic diseases ⚠
- p.Ala186Val Single submitter
- p.Ala211Val Single submitter ⚠
- p.Ala218Asp Single submitter ⚠
- p.Ala297Thr Single submitter
- p.Ala304Thr Single submitter ⚠
- p.Ala355Ser Single submitter Inborn genetic diseases ⚠
- p.Ala415Val Single submitter Inborn genetic diseases ⚠
- p.Ala42Val Single submitter Inborn genetic diseases ⚠
- p.Ala433Thr Single submitter Inborn genetic diseases ⚠
- p.Ala61Val Single submitter Inborn genetic diseases ⚠
- p.Arg127Leu Single submitter ⚠
- p.Arg136His Single submitter Inborn genetic diseases ⚠
- p.Arg150Cys Single submitter Inborn genetic diseases ⚠
- p.Arg157Leu Single submitter ⚠
- p.Arg157Trp Single submitter ⚠
- p.Arg224Cys Single submitter Inborn genetic diseases ⚠
- p.Arg284His Single submitter ⚠
- p.Arg302Lys Single submitter ⚠
- p.Arg30Ser Single submitter Inborn genetic diseases
- p.Arg330His Single submitter ⚠
- p.Arg418His Single submitter ⚠
- p.Arg41Gly Single submitter ⚠
- p.Arg441His Single submitter Inborn genetic diseases ⚠
- p.Arg453Leu Single submitter ⚠
- p.Arg456Gln Single submitter ⚠
- p.Arg456Trp Single submitter Inborn genetic diseases ⚠
- p.Arg6Leu Single submitter Inborn genetic diseases
- p.Asp110Val Single submitter Inborn genetic diseases ⚠
- p.Asp173Gly Single submitter
- p.Cys4Gly Single submitter Inborn genetic diseases ⚠
- p.Gln388Ter Single submitter
- p.Glu207Ter Single submitter
- p.Glu238Gln Single submitter Inborn genetic diseases ⚠
- p.Glu246Val Single submitter pachyonychia congenita 1 ⚠
- p.Glu256Gln Single submitter Inborn genetic diseases ⚠
- p.Glu256Lys Single submitter Inborn genetic diseases ⚠
- p.Glu362Asp Single submitter ⚠
- p.Glu442Ter Single submitter
- p.Gly16Val Single submitter Inborn genetic diseases ⚠
- p.Gly21Arg Single submitter ⚠
- p.Gly268Arg Single submitter Inborn genetic diseases ⚠
- p.Gly38Glu Single submitter
- p.Gly49Ser Single submitter ⚠
- p.Gly88Asp Single submitter Inborn genetic diseases ⚠
- p.Gly89Ser Single submitter Inborn genetic diseases ⚠
- p.His427Tyr Single submitter Inborn genetic diseases ⚠
- p.Leu112Phe Single submitter Inborn genetic diseases ⚠
- p.Lys253Arg Single submitter Inborn genetic diseases ⚠
- p.Met274Ile Single submitter pachyonychia congenita 1 ⚠
- p.Met393Leu Single submitter Inborn genetic diseases
- p.Pro166Leu Single submitter Inborn genetic diseases ⚠
- p.Ser165Arg Single submitter ⚠
- p.Ser17Thr Single submitter Inborn genetic diseases ⚠
- p.Ser33Cys Single submitter Inborn genetic diseases ⚠
- p.Ser356Pro Single submitter ⚠
- p.Ser356Tyr Single submitter Inborn genetic diseases ⚠
- p.Ser451Leu Single submitter ⚠
- p.Ser73Asn Single submitter ⚠
- p.Thr266Ile Single submitter Inborn genetic diseases ⚠
- p.Thr334Met Single submitter ⚠
- p.Tyr86_Gly87delinsCys Single submitter
- p.Val226Met Single submitter Inborn genetic diseases
- p.Val270Leu Single submitter Inborn genetic diseases ⚠
- p.Val34Phe Single submitter Inborn genetic diseases ⚠
- p.Val382Ala Single submitter Inborn genetic diseases
- p.Val52fs Single submitter
- p.Gly59Trp No assertion criteria