LIPC — 336 ClinVar variants

All ClinVar germline LIPC variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 163 flagged for review →

3 Pathogenic · 1 Likely pathogenic · 15 Conflicting · 50 Benign · 11 Benign/Likely benign · 69 Likely benign · 187 Uncertain significance

Full LIPC gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 163

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 8

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 122

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 33

The independent predictors disagree with each other — read with care.

All LIPC variants

Pathogenic 3

  • c.1052-1G>C No assertion criteria Abnormal circulating lipid concentration
  • p.Ala195Thr No assertion criteria hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Phe356= No assertion criteria hyperlipidemia due to hepatic triglyceride lipase deficiency

Likely pathogenic 1

  • p.Phe250Leu No assertion criteria Abnormal circulating lipid concentration ⚠

Conflicting classifications of pathogenicity 15

  • c.1388+13T>G Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency
  • c.88+8C>A Single submitter type 2 diabetes mellitus
  • c.89-4G>A Single submitter type 2 diabetes mellitus
  • p.Ala196= Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Arg444His Single submitter ⚠
  • p.Arg65Ter Single submitter type 2 diabetes mellitus
  • p.Asp409Ala Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency ⚠
  • p.Asp472Val Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency ⚠
  • p.His185Arg Single submitter ⚠
  • p.Leu23Phe Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency ⚠
  • p.Pro69= Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Ser289Phe Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency ⚠
  • p.Ser401= Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Thr272Ile Single submitter ⚠
  • p.Thr405Met Single submitter hyperlipidemia due to hepatic triglyceride lipase deficiency ⚠

Benign 50

Benign/Likely benign 11

  • c.1052-10C>G Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • c.575-15C>T Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Gln355Arg Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Gly411= Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.His279= Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.His327= Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.His88= Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Pro438= Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Thr343= Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency
  • p.Thr432= Multiple submitters
  • p.Thr71= Multiple submitters hyperlipidemia due to hepatic triglyceride lipase deficiency

Likely benign 69

Uncertain significance 187