LIPH — 131 ClinVar variants
All ClinVar germline LIPH variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 66 flagged for review →
4 Pathogenic · 5 Pathogenic/Likely pathogenic · 5 Likely pathogenic · 26 Benign · 21 Likely benign · 70 Uncertain significance
Full LIPH gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 66
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors lean, ClinVar uncertain 52
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
LIPH p.Ala180Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
LIPH p.Arg110Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
LIPH p.Ile336Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
- LIPH p.Thr286Met Uncertain significance Multiple submitters
-
LIPH p.Ala180Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Ala198Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Ala267Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Ala54Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Arg110Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Arg307Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Arg3Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- LIPH p.Arg405Lys Uncertain significance Single submitter
-
LIPH p.Arg412Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Asn364Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Asn383Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Asp194Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Asp300Ala
Uncertain significance
Single submitter
hypotrichosis 7
-
LIPH p.Gln288Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Glu141Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Glu290Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Glu290Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Gly161Glu
Uncertain significance
Single submitter
hypotrichosis 7
-
LIPH p.Gly285Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- LIPH p.Gly77Val Uncertain significance Single submitter
-
LIPH p.His119Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.His189Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.His189Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.His205Arg
Uncertain significance
Single submitter
hypotrichosis 7
-
LIPH p.His76Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Ile265Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Leu228Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Leu45Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Lys123Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Lys126Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Lys354Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Lys69Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Phe184Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Phe332Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Pro182Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Pro367His
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Ser16Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Ser83Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Thr266Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Thr314Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Thr47Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Trp170Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Tyr223His
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Val104Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Val203Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Val35Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Val376Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Val92Ile
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 14
The independent predictors disagree with each other — read with care.
- LIPH p.Leu379Phe Likely benign Multiple submitters
-
LIPH p.Asn339Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Asp136Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Asp147Val
Uncertain significance
Single submitter
Inborn genetic diseases
- LIPH p.Gly142Arg Uncertain significance Single submitter
-
LIPH p.Ile135Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Leu217Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Phe134Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Pro421Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Ser397Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Ser59Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Thr71Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Trp338Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
LIPH p.Val333Met
Uncertain significance
Single submitter
Inborn genetic diseases
All LIPH variants
Pathogenic 4
- p.Ile220fs Multiple submitters LIPH-related disorder
- c.886+405_1094+962del No assertion criteria Woolly hair, autosomal recessive 2, with or without hypotrichosis
- p.Ile116fs No assertion criteria hypotrichosis 7
- p.Trp108Arg No assertion criteria Woolly hair, autosomal recessive 2, with or without hypotrichosis
Pathogenic/Likely pathogenic 5
- p.Arg110Ter Multiple submitters hypotrichosis 7
- p.Cys246Ser Multiple submitters LIPH-related disorder
- p.His248Asn Multiple submitters hypotrichosis 7
- p.Lys123_Thr124insGlyLeuLeuSerValGluAspMetAsnValValValValAspTrpAsnArgGlyAlaThrThrLeuIleTyrThrHisAlaSerSerLys Multiple submitters LIPH-related disorder
- p.Ser262_Cys263insTer Multiple submitters
Likely pathogenic 5
- c.49+1G>A Single submitter
- c.982+1G>C Single submitter
- p.Asn40fs Single submitter LIPH-related disorder
- p.Asp229fs Single submitter hypotrichosis 7
- p.Met88fs Single submitter hypotrichosis 7
Benign 26
- c.1094+29C>T Multiple submitters
- c.887-171T>C Multiple submitters
- c.*182T>C Multiple submitters
- c.*86G>A Multiple submitters
- p.Lys372= Multiple submitters
- p.Val41Met Multiple submitters
- c.1095-272G>A Single submitter
- c.1268+15C>T Single submitter
- c.1268+260T>C Single submitter
- c.1269-243C>T Single submitter
- c.418-271G>T Single submitter
- c.49+15A>G Single submitter
- c.50-175A>G Single submitter
- c.50-338A>C Single submitter
- c.628+313T>C Single submitter
- c.629-264C>T Single submitter
- c.629-280G>A Single submitter
- c.718+213C>T Single submitter
- c.718+267del Single submitter
- c.719-306A>G Single submitter
- c.887-276C>A Single submitter
- c.983-340A>G Single submitter
- p.Asp17= Single submitter
- p.Cys284= Single submitter
- p.Cys53= Single submitter
- p.Tyr117= Single submitter
Likely benign 21
- p.Asn102= Multiple submitters
- p.Leu379Phe Multiple submitters ⚠
- c.1095-7C>T Single submitter
- c.526+9C>T Single submitter
- c.719-5C>G Single submitter
- c.886+18T>A Single submitter
- c.982+17del Single submitter
- p.Ala267= Single submitter
- p.Arg307= Single submitter
- p.Arg48= Single submitter
- p.Asn341= Single submitter
- p.Asn66= Single submitter
- p.Ile151= Single submitter
- p.Ile410= Single submitter
- p.Leu351= Single submitter
- p.Leu433= Single submitter
- p.Ser400= Single submitter
- p.Thr286= Single submitter
- p.Thr314= Single submitter
- p.Val104= Single submitter
- p.Val86= No assertion criteria LIPH-related disorder
Uncertain significance 70
- p.Ala180Gly Multiple submitters Inborn genetic diseases ⚠
- p.Arg110Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ile336Met Multiple submitters Inborn genetic diseases ⚠
- p.Thr286Met Multiple submitters ⚠
- c.1254_1268+7del Single submitter
- p.Ala180Thr Single submitter Inborn genetic diseases ⚠
- p.Ala198Val Single submitter Inborn genetic diseases ⚠
- p.Ala267Glu Single submitter Inborn genetic diseases ⚠
- p.Ala54Thr Single submitter Inborn genetic diseases ⚠
- p.Arg110Gln Single submitter Inborn genetic diseases ⚠
- p.Arg307Lys Single submitter Inborn genetic diseases ⚠
- p.Arg3Lys Single submitter Inborn genetic diseases ⚠
- p.Arg405Lys Single submitter ⚠
- p.Arg412Gln Single submitter Inborn genetic diseases ⚠
- p.Asn339Lys Single submitter Inborn genetic diseases ⚠
- p.Asn364Ser Single submitter Inborn genetic diseases ⚠
- p.Asn383Ser Single submitter Inborn genetic diseases ⚠
- p.Asp136Glu Single submitter Inborn genetic diseases ⚠
- p.Asp147Val Single submitter Inborn genetic diseases ⚠
- p.Asp194Gly Single submitter Inborn genetic diseases ⚠
- p.Asp300Ala Single submitter hypotrichosis 7 ⚠
- p.Gln288Leu Single submitter Inborn genetic diseases ⚠
- p.Glu141Ala Single submitter Inborn genetic diseases ⚠
- p.Glu290Gly Single submitter Inborn genetic diseases ⚠
- p.Glu290Lys Single submitter Inborn genetic diseases ⚠
- p.Gly142Arg Single submitter ⚠
- p.Gly161Glu Single submitter hypotrichosis 7 ⚠
- p.Gly285Ser Single submitter Inborn genetic diseases ⚠
- p.Gly77Val Single submitter ⚠
- p.His119Arg Single submitter Inborn genetic diseases ⚠
- p.His189Arg Single submitter Inborn genetic diseases ⚠
- p.His189Leu Single submitter Inborn genetic diseases ⚠
- p.His205Arg Single submitter hypotrichosis 7 ⚠
- p.His76Tyr Single submitter Inborn genetic diseases ⚠
- p.Ile135Thr Single submitter Inborn genetic diseases ⚠
- p.Ile265Val Single submitter Inborn genetic diseases ⚠
- p.Leu217Ser Single submitter Inborn genetic diseases ⚠
- p.Leu228Trp Single submitter Inborn genetic diseases ⚠
- p.Leu306Pro Single submitter
- p.Leu45Pro Single submitter Inborn genetic diseases ⚠
- p.Lys123Arg Single submitter Inborn genetic diseases ⚠
- p.Lys126Ile Single submitter Inborn genetic diseases ⚠
- p.Lys354Glu Single submitter Inborn genetic diseases ⚠
- p.Lys69Arg Single submitter Inborn genetic diseases ⚠
- p.Met434fs Single submitter hypotrichosis 7
- p.Met44Thr Single submitter Inborn genetic diseases
- p.Met88Lys Single submitter Inborn genetic diseases
- p.Phe134Leu Single submitter Inborn genetic diseases ⚠
- p.Phe184Leu Single submitter Inborn genetic diseases ⚠
- p.Phe332Ser Single submitter Inborn genetic diseases ⚠
- p.Pro182Ser Single submitter Inborn genetic diseases ⚠
- p.Pro367His Single submitter Inborn genetic diseases ⚠
- p.Pro421Leu Single submitter Inborn genetic diseases ⚠
- p.Ser16Leu Single submitter Inborn genetic diseases ⚠
- p.Ser397Phe Single submitter Inborn genetic diseases ⚠
- p.Ser59Phe Single submitter Inborn genetic diseases ⚠
- p.Ser83Thr Single submitter Inborn genetic diseases ⚠
- p.Thr266Asn Single submitter Inborn genetic diseases ⚠
- p.Thr314Met Single submitter Inborn genetic diseases ⚠
- p.Thr47Ile Single submitter Inborn genetic diseases ⚠
- p.Thr71Ile Single submitter Inborn genetic diseases ⚠
- p.Trp170Cys Single submitter Inborn genetic diseases ⚠
- p.Trp338Leu Single submitter Inborn genetic diseases ⚠
- p.Tyr223His Single submitter Inborn genetic diseases ⚠
- p.Val104Ile Single submitter Inborn genetic diseases ⚠
- p.Val203Ile Single submitter Inborn genetic diseases ⚠
- p.Val333Met Single submitter Inborn genetic diseases ⚠
- p.Val35Phe Single submitter Inborn genetic diseases ⚠
- p.Val376Ala Single submitter Inborn genetic diseases ⚠
- p.Val92Ile Single submitter Inborn genetic diseases ⚠