LMX1B — 715 ClinVar variants

All ClinVar germline LMX1B variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 173 flagged for review →

103 Pathogenic · 10 Pathogenic/Likely pathogenic · 40 Likely pathogenic · 26 Conflicting · 82 Benign · 18 Benign/Likely benign · 158 Likely benign · 278 Uncertain significance

Full LMX1B gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 173

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 14

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 126

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 33

The independent predictors disagree with each other — read with care.

All LMX1B variants

Pathogenic 103

Pathogenic/Likely pathogenic 10

  • p.Arg223Trp Multiple submitters LMX1B-related disorder
  • p.Arg231Ter Multiple submitters LMX1B-related disorder
  • p.Arg261Cys Multiple submitters LMX1B-related disorder
  • p.Asn269Lys Multiple submitters nail-patella syndrome
  • p.Gln149Ter Multiple submitters LMX1B-related disorder
  • p.His77Tyr Multiple submitters nail-patella-like renal disease
  • p.Ser259fs Multiple submitters
  • p.Ser74Ter Multiple submitters LMX1B-related disorder
  • p.Val262Met Multiple submitters nail-patella syndrome
  • p.Arg246Pro No assertion criteria nail-patella-like renal disease

Likely pathogenic 40

Conflicting classifications of pathogenicity 26

Benign 82

Benign/Likely benign 18

Likely benign 158

Uncertain significance 278