LRAT — 291 ClinVar variants

All ClinVar germline LRAT variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 99 flagged for review →

18 Pathogenic · 7 Pathogenic/Likely pathogenic · 11 Likely pathogenic · 14 Conflicting · 2 Benign · 7 Benign/Likely benign · 72 Likely benign · 160 Uncertain significance

Full LRAT gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 99

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 68

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 25

The independent predictors disagree with each other — read with care.

All LRAT variants

Pathogenic 18

Pathogenic/Likely pathogenic 7

  • p.Arg36fs Multiple submitters LRAT-related disorder
  • p.Arg47Ter Multiple submitters retinitis pigmentosa
  • p.Arg55Gly Multiple submitters Leber congenital amaurosis 1
  • p.Asp33fs Multiple submitters LRAT-related disorder
  • p.Lys134fs Multiple submitters LRAT-related disorder
  • p.Met73fs Multiple submitters LRAT-related disorder
  • p.Tyr154fs Multiple submitters LRAT-related disorder

Likely pathogenic 11

Conflicting classifications of pathogenicity 14

  • c.*3T>G Single submitter retinitis pigmentosa
  • c.*98C>T Single submitter Leber congenital amaurosis 14
  • p.Ala106Thr Single submitter Leber congenital amaurosis 14 ⚠
  • p.Ala135Ser Single submitter retinitis pigmentosa ⚠
  • p.Ala204Val Single submitter retinitis pigmentosa ⚠
  • p.Asn3Ser Single submitter Inborn genetic diseases ⚠
  • p.Asp83fs Single submitter inherited retinal dystrophy
  • p.Glu14Leu Single submitter Leber congenital amaurosis
  • p.Gly100Ser Single submitter Leber congenital amaurosis 1 ⚠
  • p.Gly86= Single submitter Leber congenital amaurosis 14
  • p.His163Asp Single submitter Leber congenital amaurosis 14 ⚠
  • p.Phe116Leu Single submitter Leber congenital amaurosis 1 ⚠
  • p.Pro173= Single submitter Leber congenital amaurosis 14
  • p.Pro75Leu Single submitter Leber congenital amaurosis 14 ⚠

Benign 2

Benign/Likely benign 7

  • c.*1338T>G Multiple submitters Leber congenital amaurosis 14
  • c.*1867C>T Multiple submitters Leber congenital amaurosis 14
  • c.*2670G>T Multiple submitters Leber congenital amaurosis 14
  • c.*817A>G Multiple submitters Leber congenital amaurosis 14
  • p.Glu114= Multiple submitters inherited retinal dystrophy
  • p.Phe25Tyr Multiple submitters retinitis pigmentosa
  • p.Thr215Ala Multiple submitters ⚠

Likely benign 72

Uncertain significance 160