LRMDA — 94 ClinVar variants
All ClinVar germline LRMDA variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 23 flagged for review →
6 Pathogenic · 5 Likely pathogenic · 3 Conflicting · 8 Benign · 3 Benign/Likely benign · 42 Likely benign · 27 Uncertain significance
Full LRMDA gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 23
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 17
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- LRMDA p.Arg184Cys Uncertain significance Multiple submitters
- LRMDA p.Arg207His Uncertain significance Multiple submitters
-
LRMDA p.Tyr129Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
- LRMDA c.132-253008G>A Uncertain significance Single submitter
- LRMDA c.132-253022A>G Uncertain significance Single submitter
- LRMDA p.Arg156Gln Uncertain significance Single submitter
- LRMDA p.Arg222Gln Uncertain significance Single submitter
- LRMDA p.Arg53Thr Uncertain significance Single submitter
- LRMDA p.Asn112Tyr Uncertain significance Single submitter
- LRMDA p.Cys206Tyr Uncertain significance Single submitter
- LRMDA p.Glu155Lys Uncertain significance Single submitter
- LRMDA p.Ile87Val Uncertain significance Single submitter
- LRMDA p.Pro182Leu Uncertain significance Single submitter
- LRMDA p.Ser108Asn Uncertain significance Single submitter
- LRMDA p.Ser198Gly Uncertain significance Single submitter
- LRMDA p.Thr187Met Uncertain significance Single submitter
- LRMDA p.Val209Ile Uncertain significance Single submitter
Predictors split 5
The independent predictors disagree with each other — read with care.
-
LRMDA p.Met166Thr
Uncertain significance
Multiple submitters
Inborn genetic diseases
- LRMDA p.Arg219Gly Uncertain significance Single submitter
- LRMDA p.Asn117Lys Uncertain significance Single submitter
- LRMDA p.Leu160Phe Benign Single submitter
- LRMDA p.Met166Val Uncertain significance Single submitter
All LRMDA variants
Pathogenic 6
- p.Ala51fs Multiple submitters C10ORF11 & LRMDA-related disorders
- p.Arg156Ter Single submitter C10ORF11 & LRMDA-related disorders
- p.Glu195fs Single submitter
- p.Ile221fs Single submitter
- p.Tyr208fs Single submitter
- p.Tyr208Ter Single submitter
Likely pathogenic 5
- c.259-2del Single submitter
- c.398+1G>C Single submitter
- c.398+2_398+13del Single submitter
- c.601+1G>T Single submitter C10ORF11 & LRMDA-related disorders
- p.Arg222Ter Single submitter oculocutaneous albinism type 7
Conflicting classifications of pathogenicity 3
- c.132-253012del Single submitter
- c.602-8A>T Single submitter
- p.Arg184His Single submitter ⚠
Benign 8
- c.398+31A>C Multiple submitters oculocutaneous albinism type 7
- c.516+53C>T Multiple submitters oculocutaneous albinism type 7
- p.Gly204Glu Multiple submitters
- p.Leu122= Multiple submitters oculocutaneous albinism type 7
- p.Ser181Phe Multiple submitters
- p.Ala159= Single submitter
- p.Leu160Phe Single submitter ⚠
- p.Leu42Phe No assertion criteria LRMDA-related disorder
Benign/Likely benign 3
- c.132-253009C>T Multiple submitters
- p.Asn112= Multiple submitters
- p.Leu74= Multiple submitters
Likely benign 42
- c.601+18T>G Multiple submitters
- c.132-252969C>T Single submitter
- c.132-253001A>C Single submitter
- c.132-5del Single submitter
- c.259-11A>G Single submitter
- c.398+15G>C Single submitter
- c.398+20A>C Single submitter
- c.399-12C>A Single submitter
- c.399-18C>G Single submitter
- c.399-20C>T Single submitter
- c.399-8T>A Single submitter
- c.516+12A>G Single submitter
- c.516+19G>A Single submitter
- c.516+8G>T Single submitter
- c.517-20A>C Single submitter
- c.517-5C>A Single submitter
- c.601+11A>T Single submitter
- c.602-10T>G Single submitter
- p.Ala114= Single submitter
- p.Ala148= Single submitter
- p.Arg219= Single submitter
- p.Asn117= Single submitter
- p.Asn214= Single submitter
- p.Asp128= Single submitter
- p.Asp177= Single submitter
- p.Asp224= Single submitter
- p.Gln225= Single submitter
- p.Glu195= Single submitter
- p.Glu216= Single submitter
- p.Gly204= Single submitter
- p.His199= Single submitter
- p.Leu109= Single submitter
- p.Leu146= Single submitter
- p.Leu97= Single submitter
- p.Lys213= Single submitter
- p.Pro182= Single submitter
- p.Pro190= Single submitter
- p.Ser198= Single submitter
- p.Thr187= Single submitter
- p.Tyr208= Single submitter
- p.Val168= Single submitter
- p.Val169= Single submitter
Uncertain significance 27
- p.Arg184Cys Multiple submitters ⚠
- p.Arg207His Multiple submitters ⚠
- p.Met166Thr Multiple submitters Inborn genetic diseases ⚠
- p.Tyr129Cys Multiple submitters Inborn genetic diseases ⚠
- c.132-253008G>A Single submitter ⚠
- c.132-253022A>G Single submitter ⚠
- c.259-3C>G Single submitter
- c.601+2T>C Single submitter
- p.Arg156Gln Single submitter ⚠
- p.Arg219Gly Single submitter ⚠
- p.Arg222Gln Single submitter ⚠
- p.Arg53Thr Single submitter ⚠
- p.Asn112Tyr Single submitter ⚠
- p.Asn117Lys Single submitter ⚠
- p.Cys206Tyr Single submitter ⚠
- p.Glu123Ile Single submitter
- p.Glu155Lys Single submitter ⚠
- p.Ile87Val Single submitter ⚠
- p.Leu90Phe Single submitter
- p.Met166Val Single submitter ⚠
- p.Met1Thr Single submitter oculocutaneous albinism type 7
- p.Pro171Leu Single submitter
- p.Pro182Leu Single submitter ⚠
- p.Ser108Asn Single submitter ⚠
- p.Ser198Gly Single submitter ⚠
- p.Thr187Met Single submitter ⚠
- p.Val209Ile Single submitter ⚠