MAG — 335 ClinVar variants

All ClinVar germline MAG variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 159 flagged for review →

8 Pathogenic · 1 Pathogenic/Likely pathogenic · 7 Likely pathogenic · 6 Conflicting · 17 Benign · 6 Benign/Likely benign · 121 Likely benign · 169 Uncertain significance

Full MAG gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 159

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 1

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 123

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 35

The independent predictors disagree with each other — read with care.

All MAG variants

Pathogenic 8

  • p.Arg425Ter Single submitter hereditary spastic paraplegia 75
  • p.Gln376Ter Single submitter hereditary spastic paraplegia 75
  • p.Glu110Ter Single submitter hereditary spastic paraplegia 75
  • p.Trp174Ter Single submitter hereditary spastic paraplegia 75
  • p.Val241fs Single submitter hereditary spastic paraplegia 75
  • p.Cys430Gly No assertion criteria hereditary spastic paraplegia 75
  • p.Gly113Arg No assertion criteria hereditary spastic paraplegia 75
  • p.Ser133Arg No assertion criteria hereditary spastic paraplegia 75 ⚠

Pathogenic/Likely pathogenic 1

  • p.Arg508Ter Multiple submitters hereditary spastic paraplegia 75

Likely pathogenic 7

Conflicting classifications of pathogenicity 6

  • c.971-5C>T Single submitter Inborn genetic diseases
  • p.Ala151Val Single submitter hereditary spastic paraplegia 75 ⚠
  • p.Arg537Cys Single submitter hereditary spastic paraplegia 75 ⚠
  • p.Pro353Leu Single submitter hereditary spastic paraplegia 75 ⚠
  • p.Ser200= Single submitter hereditary spastic paraplegia 75
  • p.Ser573= Single submitter hereditary spastic paraplegia 75

Benign 17

Benign/Likely benign 6

  • c.1617-17C>T Multiple submitters hereditary spastic paraplegia 75
  • c.1716+18G>C Multiple submitters hereditary spastic paraplegia 75
  • c.47-4G>T Multiple submitters hereditary spastic paraplegia 75
  • c.971-4G>A Multiple submitters hereditary spastic paraplegia 75
  • p.His82= Multiple submitters hereditary spastic paraplegia 75
  • p.Ser600Leu Multiple submitters hereditary spastic paraplegia 75

Likely benign 121

  • c.712+19GGGGCGGGGT[2] Multiple submitters hereditary spastic paraplegia 75
  • p.Ala251= Multiple submitters hereditary spastic paraplegia 75
  • p.Ala6= Multiple submitters hereditary spastic paraplegia 75
  • p.Arg77His Multiple submitters hereditary spastic paraplegia 75
  • p.Cys37= Multiple submitters hereditary spastic paraplegia 75
  • p.Glu619= Multiple submitters hereditary spastic paraplegia 75
  • p.Pro269= Multiple submitters hereditary spastic paraplegia 75
  • p.Pro413= Multiple submitters hereditary spastic paraplegia 75
  • p.Ser448= Multiple submitters hereditary spastic paraplegia 75
  • p.Thr368Met Multiple submitters hereditary spastic paraplegia 75
  • p.Thr427= Multiple submitters
  • p.Thr5Met Multiple submitters hereditary spastic paraplegia 75
  • p.Thr612= Multiple submitters hereditary spastic paraplegia 75
  • p.Val257= Multiple submitters hereditary spastic paraplegia 75
  • p.Val72= Multiple submitters hereditary spastic paraplegia 75
  • c.1231+13C>T Single submitter hereditary spastic paraplegia 75
  • c.1231+9C>A Single submitter hereditary spastic paraplegia 75
  • c.1232-18C>A Single submitter hereditary spastic paraplegia 75
  • c.1519+15C>G Single submitter hereditary spastic paraplegia 75
  • c.1520-4T>G Single submitter hereditary spastic paraplegia 75
  • c.1716+11G>A Single submitter hereditary spastic paraplegia 75
  • c.1716+12G>C Single submitter hereditary spastic paraplegia 75
  • c.1717-6T>A Single submitter hereditary spastic paraplegia 75
  • c.1717-8C>T Single submitter hereditary spastic paraplegia 75
  • c.415+14G>A Single submitter hereditary spastic paraplegia 75
  • c.416-12C>G Single submitter hereditary spastic paraplegia 75
  • c.416-12C>T Single submitter hereditary spastic paraplegia 75
  • c.416-6G>A Single submitter hereditary spastic paraplegia 75
  • c.46+20G>A Single submitter hereditary spastic paraplegia 75
  • c.47-10T>G Single submitter hereditary spastic paraplegia 75
  • c.47-13T>C Single submitter hereditary spastic paraplegia 75
  • c.47-15C>T Single submitter hereditary spastic paraplegia 75
  • c.47-16T>A Single submitter hereditary spastic paraplegia 75
  • c.47-19C>T Single submitter hereditary spastic paraplegia 75
  • c.712+15GGGCG[3] Single submitter hereditary spastic paraplegia 75
  • c.712+15GGGCG[4] Single submitter hereditary spastic paraplegia 75
  • c.712+18C>T Single submitter hereditary spastic paraplegia 75
  • c.712+19GGGGCGGGGT[4] Single submitter hereditary spastic paraplegia 75
  • c.713-4T>C Single submitter hereditary spastic paraplegia 75
  • c.970+17G>A Single submitter hereditary spastic paraplegia 75
  • c.970+18T>C Single submitter hereditary spastic paraplegia 75
  • c.971-14G>A Single submitter hereditary spastic paraplegia 75
  • c.971-15C>T Single submitter hereditary spastic paraplegia 75
  • c.971-16C>G Single submitter hereditary spastic paraplegia 75
  • c.971-4G>C Single submitter hereditary spastic paraplegia 75
  • p.Ala283= Single submitter hereditary spastic paraplegia 75
  • p.Ala337= Single submitter hereditary spastic paraplegia 75
  • p.Ala381= Single submitter hereditary spastic paraplegia 75
  • p.Ala394= Single submitter hereditary spastic paraplegia 75
  • p.Ala490= Single submitter hereditary spastic paraplegia 75
  • p.Ala519= Single submitter hereditary spastic paraplegia 75
  • p.Arg18= Single submitter hereditary spastic paraplegia 75
  • p.Arg188= Single submitter hereditary spastic paraplegia 75
  • p.Arg214= Single submitter hereditary spastic paraplegia 75
  • p.Arg51= Single submitter hereditary spastic paraplegia 75
  • p.Arg605= Single submitter hereditary spastic paraplegia 75
  • p.Asn106= Single submitter hereditary spastic paraplegia 75
  • p.Asn406= Single submitter hereditary spastic paraplegia 75
  • p.Asn492= Single submitter hereditary spastic paraplegia 75
  • p.Asp276= Single submitter hereditary spastic paraplegia 75
  • p.Cys305= Single submitter hereditary spastic paraplegia 75
  • p.Cys432= Single submitter hereditary spastic paraplegia 75
  • p.Gln227= Single submitter hereditary spastic paraplegia 75
  • p.Gln364= Single submitter hereditary spastic paraplegia 75
  • p.Gln479= Single submitter hereditary spastic paraplegia 75
  • p.Glu229= Single submitter hereditary spastic paraplegia 75
  • p.Glu286= Single submitter hereditary spastic paraplegia 75
  • p.Glu439= Single submitter hereditary spastic paraplegia 75
  • p.Glu544= Single submitter hereditary spastic paraplegia 75
  • p.Gly122= Single submitter hereditary spastic paraplegia 75
  • p.Gly152= Single submitter
  • p.Gly179= Single submitter hereditary spastic paraplegia 75
  • p.Gly277= Single submitter hereditary spastic paraplegia 75
  • p.Gly319= Single submitter hereditary spastic paraplegia 75
  • p.Gly566= Single submitter hereditary spastic paraplegia 75
  • p.Gly585= Single submitter hereditary spastic paraplegia 75
  • p.His420= Single submitter hereditary spastic paraplegia 75
  • p.Ile40= Single submitter hereditary spastic paraplegia 75
  • p.Ile529= Single submitter hereditary spastic paraplegia 75
  • p.Leu186= Single submitter hereditary spastic paraplegia 75
  • p.Leu50= Single submitter hereditary spastic paraplegia 75
  • p.Leu557= Single submitter hereditary spastic paraplegia 75
  • p.Leu617= Single submitter hereditary spastic paraplegia 75
  • p.Phe204= Single submitter hereditary spastic paraplegia 75
  • p.Phe460= Single submitter hereditary spastic paraplegia 75
  • p.Pro109= Single submitter
  • p.Pro162= Single submitter hereditary spastic paraplegia 75
  • p.Pro353= Single submitter hereditary spastic paraplegia 75
  • p.Pro384= Single submitter hereditary spastic paraplegia 75
  • p.Pro438= Single submitter hereditary spastic paraplegia 75
  • p.Pro440= Single submitter hereditary spastic paraplegia 75
  • p.Pro483= Single submitter hereditary spastic paraplegia 75
  • p.Pro555= Single submitter
  • p.Pro590= Single submitter hereditary spastic paraplegia 75
  • p.Pro591= Single submitter hereditary spastic paraplegia 75
  • p.Pro71= Single submitter hereditary spastic paraplegia 75
  • p.Ser348= Single submitter hereditary spastic paraplegia 75
  • p.Ser351= Single submitter hereditary spastic paraplegia 75
  • p.Ser373= Single submitter hereditary spastic paraplegia 75
  • p.Ser560= Single submitter hereditary spastic paraplegia 75
  • p.Ser596= Single submitter hereditary spastic paraplegia 75
  • p.Ser76= Single submitter hereditary spastic paraplegia 75
  • p.Thr207= Single submitter hereditary spastic paraplegia 75
  • p.Thr224= Single submitter hereditary spastic paraplegia 75
  • p.Thr272= Single submitter hereditary spastic paraplegia 75
  • p.Thr358= Single submitter hereditary spastic paraplegia 75
  • p.Thr452= Single submitter hereditary spastic paraplegia 75
  • p.Thr5= Single submitter hereditary spastic paraplegia 75
  • p.Thr614= Single submitter hereditary spastic paraplegia 75
  • p.Tyr124= Single submitter hereditary spastic paraplegia 75
  • p.Tyr371= Single submitter hereditary spastic paraplegia 75
  • p.Tyr398= Single submitter
  • p.Tyr462= Single submitter hereditary spastic paraplegia 75
  • p.Val107= Single submitter hereditary spastic paraplegia 75
  • p.Val241= Single submitter hereditary spastic paraplegia 75
  • p.Val302Asp Single submitter hereditary spastic paraplegia 75
  • p.Val343= Single submitter hereditary spastic paraplegia 75
  • p.Val433Leu Single submitter hereditary spastic paraplegia 75
  • p.Val451= Single submitter hereditary spastic paraplegia 75
  • p.Val521= Single submitter hereditary spastic paraplegia 75
  • p.Val81= Single submitter hereditary spastic paraplegia 75

Uncertain significance 169