MCM4 — 685 ClinVar variants

All ClinVar germline MCM4 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 291 flagged for review →

1 Pathogenic · 2 Likely pathogenic · 18 Conflicting · 15 Benign · 10 Benign/Likely benign · 268 Likely benign · 371 Uncertain significance

Full MCM4 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 291

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 5

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 222

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 222

Predictors split 64

The independent predictors disagree with each other — read with care.

All MCM4 variants

Pathogenic 1

  • c.71-2A>G Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency

Likely pathogenic 2

  • p.Gln74Ter Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Leu378fs Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency

Conflicting classifications of pathogenicity 18

  • c.1175-7C>T Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.1800+8G>A Single submitter
  • c.693+7A>G Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Arg321Cys Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency ⚠
  • p.Arg610His Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency ⚠
  • p.Arg845His Single submitter ⚠
  • p.Ile80= Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Leu526= Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Lys163Glu Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency ⚠
  • p.Lys688Arg Single submitter ⚠
  • p.Phe576= Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Pro297= Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Pro33= Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Ser228Cys Single submitter ⚠
  • p.Ser326= Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Ser469Thr Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency ⚠
  • p.Thr53= Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Thr53Ala Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency ⚠

Benign 15

  • c.1174+20C>T Multiple submitters
  • c.236-4A>G Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.*197T>C Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.*358T>C Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.*71C>A Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Pro403= Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Ser286= Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.236-5del Single submitter
  • c.2366-8del Single submitter
  • c.598-5dup Single submitter
  • c.71-94C>T Single submitter
  • c.*1256A>G Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.*148A>G Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.*214G>A Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.*819C>A Single submitter primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency

Benign/Likely benign 10

  • c.1053+4C>T Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.1435-7del Multiple submitters
  • c.1800+20G>A Multiple submitters
  • c.1929-6T>C Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.2365+4C>T Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • c.598-10T>C Multiple submitters
  • c.833-14T>C Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Lys688= Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Thr553= Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency
  • p.Val523= Multiple submitters primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency

Likely benign 268

Uncertain significance 371

Showing the top 300 by review status; the full set is in the sitemap.