MFRP — 702 ClinVar variants

All ClinVar germline MFRP variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 303 flagged for review →

28 Pathogenic · 17 Pathogenic/Likely pathogenic · 18 Likely pathogenic · 33 Conflicting · 16 Benign · 20 Benign/Likely benign · 231 Likely benign · 339 Uncertain significance

Full MFRP gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 303

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 11

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 234

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 234

Predictors split 57

The independent predictors disagree with each other — read with care.

All MFRP variants

Pathogenic 28

  • c.642-2A>G Multiple submitters C1QTNF5 & MFRP-related disorders
  • p.Gln175Ter Multiple submitters MFRP-related disorder
  • p.Gln319Ter Multiple submitters isolated microphthalmia 5
  • p.Thr364fs Multiple submitters nanophthalmos 2
  • p.Trp249Ter Multiple submitters isolated microphthalmia 5
  • p.Trp67Ter Multiple submitters inherited retinal dystrophy
  • c.1124+1G>A Single submitter isolated microphthalmia 5
  • c.641+1G>A Single submitter isolated microphthalmia 5
  • p.Ala252fs Single submitter isolated microphthalmia 5
  • p.Asn167Ser Single submitter MFRP-related disorder ⚠
  • p.Asn304fs Single submitter isolated microphthalmia 5
  • p.Asp162fs Single submitter isolated microphthalmia 5
  • p.Asp445fs Single submitter isolated microphthalmia 5
  • p.Cys433fs Single submitter isolated microphthalmia 5
  • p.His384fs Single submitter isolated microphthalmia 5
  • p.Leu212fs Single submitter isolated microphthalmia 5
  • p.Leu341Pro Single submitter MFRP-related disorder
  • p.Ser149fs Single submitter isolated microphthalmia 5
  • p.Ser193fs Single submitter isolated microphthalmia 5
  • p.Ser424fs Single submitter
  • p.Ser502fs Single submitter isolated microphthalmia 5
  • p.Thr410fs Single submitter isolated microphthalmia 5
  • p.Thr417fs Single submitter isolated microphthalmia 5
  • p.Trp172Ter Single submitter isolated microphthalmia 5
  • p.Trp329Ter Single submitter isolated microphthalmia 5
  • p.Tyr317Ter Single submitter isolated microphthalmia 5
  • c.899-3C>A No assertion criteria nanophthalmos 2
  • p.Ile182Thr No assertion criteria nanophthalmos 2

Pathogenic/Likely pathogenic 17

  • c.1124+1G>T Multiple submitters isolated microphthalmia 5
  • c.271+1G>A Multiple submitters MFRP-related disorder
  • c.428-2A>G Multiple submitters isolated microphthalmia 5
  • p.Ala100fs Multiple submitters MFRP-related disorder
  • p.Arg539Cys Multiple submitters MFRP-related disorder
  • p.Arg57Ter Multiple submitters MFRP-related disorder
  • p.Asn167fs Multiple submitters MFRP-related disorder
  • p.Cys285Ter Multiple submitters isolated microphthalmia 5
  • p.Cys34Ter Multiple submitters MFRP-related disorder
  • p.Gln320Ter Multiple submitters MFRP-related disorder
  • p.Gln470Ter Multiple submitters isolated microphthalmia 5
  • p.Glu133Ter Multiple submitters MFRP-related disorder
  • p.Glu360Ter Multiple submitters isolated microphthalmia 5
  • p.Gly210fs Multiple submitters isolated microphthalmia 5
  • p.Leu105fs Multiple submitters isolated microphthalmia 5
  • p.Pro96fs Multiple submitters isolated microphthalmia 5
  • p.Thr223fs Multiple submitters isolated microphthalmia 5

Likely pathogenic 18

Conflicting classifications of pathogenicity 33

Benign 16

Benign/Likely benign 20

  • c.1387+3G>A Multiple submitters isolated microphthalmia 5
  • c.157+7A>G Multiple submitters isolated microphthalmia 5
  • c.641+9C>T Multiple submitters isolated microphthalmia 5
  • c.899-10C>A Multiple submitters isolated microphthalmia 5
  • c.-88C>T Multiple submitters
  • c.*235G>A Multiple submitters isolated microphthalmia 5
  • p.Ala545= Multiple submitters isolated microphthalmia 5
  • p.Arg257His Multiple submitters isolated microphthalmia 5
  • p.Gly210Val Multiple submitters isolated microphthalmia 5 ⚠
  • p.His180= Multiple submitters isolated microphthalmia 5
  • p.Ile119Val Multiple submitters isolated microphthalmia 5
  • p.Leu318= Multiple submitters isolated microphthalmia 5
  • p.Leu458Phe Multiple submitters isolated microphthalmia 5
  • p.Phe65= Multiple submitters isolated microphthalmia 5
  • p.Pro166Ala Multiple submitters isolated microphthalmia 5
  • p.Pro24= Multiple submitters isolated microphthalmia 5
  • p.Pro97Leu Multiple submitters isolated microphthalmia 5
  • p.Thr223= Multiple submitters isolated microphthalmia 5
  • p.Tyr164= Multiple submitters isolated microphthalmia 5
  • p.Val136Met Multiple submitters isolated microphthalmia 5

Likely benign 231

  • c.1124+13G>T Multiple submitters isolated microphthalmia 5
  • c.1255+13G>A Multiple submitters isolated microphthalmia 5
  • c.1255+15G>A Multiple submitters isolated microphthalmia 5
  • c.1255+16C>A Multiple submitters isolated microphthalmia 5
  • c.1256-16C>A Multiple submitters isolated microphthalmia 5
  • c.1256-18T>C Multiple submitters isolated microphthalmia 5
  • c.1387+20G>A Multiple submitters isolated microphthalmia 5
  • c.1388-18T>C Multiple submitters isolated microphthalmia 5
  • c.1515+7T>C Multiple submitters isolated microphthalmia 5
  • c.1516-19G>A Multiple submitters isolated microphthalmia 5
  • c.158-20C>G Multiple submitters isolated microphthalmia 5
  • c.271+11G>A Multiple submitters isolated microphthalmia 5
  • c.271+13G>A Multiple submitters isolated microphthalmia 5
  • c.641+20G>A Multiple submitters isolated microphthalmia 5
  • c.642-20C>T Multiple submitters isolated microphthalmia 5
  • c.772+18T>C Multiple submitters isolated microphthalmia 5
  • c.773-16T>C Multiple submitters isolated microphthalmia 5
  • c.898+18G>C Multiple submitters isolated microphthalmia 5
  • c.898+20G>T Multiple submitters isolated microphthalmia 5
  • c.898+7G>T Multiple submitters isolated microphthalmia 5
  • c.975+8C>G Multiple submitters isolated microphthalmia 5
  • c.976-16C>T Multiple submitters isolated microphthalmia 5
  • p.Ala100= Multiple submitters isolated microphthalmia 5
  • p.Ala577= Multiple submitters isolated microphthalmia 5
  • p.Arg257= Multiple submitters isolated microphthalmia 5
  • p.Asn486= Multiple submitters isolated microphthalmia 5
  • p.Asp3= Multiple submitters isolated microphthalmia 5
  • p.Asp352= Multiple submitters isolated microphthalmia 5
  • p.Glu499= Multiple submitters isolated microphthalmia 5
  • p.Gly256= Multiple submitters isolated microphthalmia 5
  • p.Gly99= Multiple submitters isolated microphthalmia 5
  • p.Ile186= Multiple submitters isolated microphthalmia 5
  • p.Leu475= Multiple submitters isolated microphthalmia 5
  • p.Leu507= Multiple submitters isolated microphthalmia 5
  • p.Leu73= Multiple submitters isolated microphthalmia 5
  • p.Phe26= Multiple submitters isolated microphthalmia 5
  • p.Phe414= Multiple submitters isolated microphthalmia 5
  • p.Pro151= Multiple submitters isolated microphthalmia 5
  • p.Pro161= Multiple submitters isolated microphthalmia 5
  • p.Pro222= Multiple submitters isolated microphthalmia 5
  • p.Ser16= Multiple submitters isolated microphthalmia 5
  • p.Ser455= Multiple submitters isolated microphthalmia 5
  • p.Thr112= Multiple submitters isolated microphthalmia 5
  • p.Thr120= Multiple submitters isolated microphthalmia 5
  • p.Thr19= Multiple submitters isolated microphthalmia 5
  • p.Thr447= Multiple submitters isolated microphthalmia 5
  • c.1124+10C>T Single submitter isolated microphthalmia 5
  • c.1124+19A>G Single submitter
  • c.1125-14T>C Single submitter isolated microphthalmia 5
  • c.1125-20C>T Single submitter isolated microphthalmia 5
  • c.1125-6G>C Single submitter isolated microphthalmia 5
  • c.1255+15G>T Single submitter isolated microphthalmia 5
  • c.1255+7G>T Single submitter isolated microphthalmia 5
  • c.1256-14C>T Single submitter isolated microphthalmia 5
  • c.1256-17G>T Single submitter isolated microphthalmia 5
  • c.1256-20C>T Single submitter isolated microphthalmia 5
  • c.1387+11T>C Single submitter isolated microphthalmia 5
  • c.1387+14C>A Single submitter isolated microphthalmia 5
  • c.1387+17T>C Single submitter isolated microphthalmia 5
  • c.1388-12C>T Single submitter isolated microphthalmia 5
  • c.1388-14C>T Single submitter isolated microphthalmia 5
  • c.1388-19del Single submitter isolated microphthalmia 5
  • c.1388-8C>T Single submitter isolated microphthalmia 5
  • c.1515+13G>C Single submitter isolated microphthalmia 5
  • c.1515+20G>A Single submitter isolated microphthalmia 5
  • c.157+9C>A Single submitter isolated microphthalmia 5
  • c.158-11C>G Single submitter isolated microphthalmia 5
  • c.158-17C>T Single submitter isolated microphthalmia 5
  • c.158-19C>T Single submitter isolated microphthalmia 5
  • c.158-4G>A Single submitter isolated microphthalmia 5
  • c.158-5C>T Single submitter isolated microphthalmia 5
  • c.271+10C>A Single submitter isolated microphthalmia 5
  • c.271+12G>A Single submitter isolated microphthalmia 5
  • c.271+19C>T Single submitter isolated microphthalmia 5
  • c.271+8C>T Single submitter isolated microphthalmia 5
  • c.272-18C>T Single submitter isolated microphthalmia 5
  • c.272-8G>A Single submitter isolated microphthalmia 5
  • c.272-9C>T Single submitter isolated microphthalmia 5
  • c.427+14G>T Single submitter isolated microphthalmia 5
  • c.427+18A>T Single submitter isolated microphthalmia 5
  • c.428-10A>T Single submitter isolated microphthalmia 5
  • c.428-17A>G Single submitter isolated microphthalmia 5
  • c.428-19C>G Single submitter isolated microphthalmia 5
  • c.54+19C>T Single submitter
  • c.54+20G>A Single submitter isolated microphthalmia 5
  • c.54+9C>T Single submitter isolated microphthalmia 5
  • c.55-8C>A Single submitter isolated microphthalmia 5
  • c.55-8C>G Single submitter isolated microphthalmia 5
  • c.641+11C>T Single submitter isolated microphthalmia 5
  • c.641+14dup Single submitter isolated microphthalmia 5
  • c.641+17C>G Single submitter isolated microphthalmia 5
  • c.641+19A>C Single submitter isolated microphthalmia 5
  • c.641+8C>T Single submitter isolated microphthalmia 5
  • c.642-11G>C Single submitter isolated microphthalmia 5
  • c.642-15C>A Single submitter isolated microphthalmia 5
  • c.642-16A>G Single submitter isolated microphthalmia 5
  • c.642-18C>A Single submitter isolated microphthalmia 5
  • c.642-19C>A Single submitter isolated microphthalmia 5
  • c.642-19C>G Single submitter isolated microphthalmia 5
  • c.642-20C>G Single submitter isolated microphthalmia 5
  • c.772+10T>C Single submitter isolated microphthalmia 5
  • c.772+11T>C Single submitter isolated microphthalmia 5
  • c.772+14_772+15delinsAT Single submitter isolated microphthalmia 5
  • c.772+15A>G Single submitter isolated microphthalmia 5
  • c.772+19G>A Single submitter isolated microphthalmia 5
  • c.772+8T>G Single submitter isolated microphthalmia 5
  • c.773-17C>G Single submitter isolated microphthalmia 5
  • c.773-20C>T Single submitter isolated microphthalmia 5
  • c.898+10A>G Single submitter isolated microphthalmia 5
  • c.898+11G>A Single submitter isolated microphthalmia 5
  • c.898+12G>A Single submitter
  • c.898+15T>C Single submitter isolated microphthalmia 5
  • c.898+17G>A Single submitter isolated microphthalmia 5
  • c.898+18G>A Single submitter isolated microphthalmia 5
  • c.898+19G>C Single submitter isolated microphthalmia 5
  • c.898+19G>T Single submitter isolated microphthalmia 5
  • c.898+20G>A Single submitter isolated microphthalmia 5
  • c.898+7G>A Single submitter isolated microphthalmia 5
  • c.898+9C>G Single submitter isolated microphthalmia 5
  • c.899-12A>G Single submitter isolated microphthalmia 5
  • c.899-15del Single submitter isolated microphthalmia 5
  • c.899-4A>G Single submitter isolated microphthalmia 5
  • c.975+12G>C Single submitter isolated microphthalmia 5
  • c.976-10C>T Single submitter isolated microphthalmia 5
  • c.976-12G>A Single submitter isolated microphthalmia 5
  • c.976-4C>G Single submitter isolated microphthalmia 5
  • c.976-4C>T Single submitter isolated microphthalmia 5
  • c.976-7C>T Single submitter isolated microphthalmia 5
  • c.976-8T>C Single submitter isolated microphthalmia 5
  • c.-31G>A Single submitter
  • c.*12G>A Single submitter
  • p.Ala107= Single submitter isolated microphthalmia 5
  • p.Ala124= Single submitter isolated microphthalmia 5
  • p.Ala181= Single submitter isolated microphthalmia 5
  • p.Ala335= Single submitter isolated microphthalmia 5
  • p.Ala369= Single submitter isolated microphthalmia 5
  • p.Ala409= Single submitter isolated microphthalmia 5
  • p.Ala413= Single submitter isolated microphthalmia 5
  • p.Ala49= Single submitter isolated microphthalmia 5
  • p.Arg55= Single submitter isolated microphthalmia 5
  • p.Arg57= Single submitter isolated microphthalmia 5
  • p.Arg64= Single submitter isolated microphthalmia 5
  • p.Arg64His Single submitter isolated microphthalmia 5
  • p.Asn284= Single submitter isolated microphthalmia 5
  • p.Asp162= Single submitter isolated microphthalmia 5
  • p.Asp276= Single submitter isolated microphthalmia 5
  • p.Asp280= Single submitter isolated microphthalmia 5
  • p.Asp445= Single submitter isolated microphthalmia 5
  • p.Cys34= Single submitter isolated microphthalmia 5
  • p.Cys421= Single submitter isolated microphthalmia 5
  • p.Cys474= Single submitter isolated microphthalmia 5
  • p.Cys542= Single submitter isolated microphthalmia 5
  • p.Gln320= Single submitter isolated microphthalmia 5
  • p.Gln324= Single submitter isolated microphthalmia 5
  • p.Gln470= Single submitter isolated microphthalmia 5
  • p.Gln93= Single submitter isolated microphthalmia 5
  • p.Glu20= Single submitter isolated microphthalmia 5
  • p.Glu242= Single submitter isolated microphthalmia 5
  • p.Glu264= Single submitter isolated microphthalmia 5
  • p.Glu29= Single submitter isolated microphthalmia 5
  • p.Glu380= Single submitter isolated microphthalmia 5
  • p.Gly146= Single submitter
  • p.Gly210= Single submitter isolated microphthalmia 5
  • p.Gly281= Single submitter isolated microphthalmia 5
  • p.Gly302= Single submitter isolated microphthalmia 5
  • p.Gly303= Single submitter isolated microphthalmia 5
  • p.Gly307= Single submitter isolated microphthalmia 5
  • p.Gly336= Single submitter isolated microphthalmia 5
  • p.Gly368= Single submitter isolated microphthalmia 5
  • p.Gly374= Single submitter isolated microphthalmia 5
  • p.Gly58= Single submitter isolated microphthalmia 5
  • p.His547Arg Single submitter Inborn genetic diseases
  • p.Ile174= Single submitter isolated microphthalmia 5
  • p.Ile331= Single submitter isolated microphthalmia 5
  • p.Leu105= Single submitter isolated microphthalmia 5
  • p.Leu147= Single submitter isolated microphthalmia 5
  • p.Leu148= Single submitter isolated microphthalmia 5
  • p.Leu204= Single submitter isolated microphthalmia 5
  • p.Leu232= Single submitter isolated microphthalmia 5
  • p.Leu274= Single submitter isolated microphthalmia 5
  • p.Leu305= Single submitter isolated microphthalmia 5
  • p.Leu308= Single submitter
  • p.Leu348= Single submitter isolated microphthalmia 5
  • p.Leu385= Single submitter isolated microphthalmia 5
  • p.Leu392= Single submitter isolated microphthalmia 5
  • p.Leu412= Single submitter
  • p.Leu556= Single submitter isolated microphthalmia 5
  • p.Leu573= Single submitter isolated microphthalmia 5
  • p.Leu68= Single submitter isolated microphthalmia 5
  • p.Leu71= Single submitter isolated microphthalmia 5
  • p.Leu76= Single submitter isolated microphthalmia 5
  • p.Leu77= Single submitter isolated microphthalmia 5
  • p.Leu79= Single submitter isolated microphthalmia 5
  • p.Leu80= Single submitter isolated microphthalmia 5
  • p.Leu92= Single submitter isolated microphthalmia 5
  • p.Phe155= Single submitter isolated microphthalmia 5
  • p.Phe356= Single submitter isolated microphthalmia 5
  • p.Pro104= Single submitter
  • p.Pro206= Single submitter isolated microphthalmia 5
  • p.Pro221= Single submitter isolated microphthalmia 5
  • p.Pro423= Single submitter isolated microphthalmia 5
  • p.Pro457= Single submitter isolated microphthalmia 5
  • p.Pro48Ser Single submitter
  • p.Pro526= Single submitter isolated microphthalmia 5
  • p.Pro536= Single submitter isolated microphthalmia 5
  • p.Pro61= Single submitter isolated microphthalmia 5
  • p.Ser103= Single submitter isolated microphthalmia 5
  • p.Ser239= Single submitter isolated microphthalmia 5
  • p.Ser332= Single submitter isolated microphthalmia 5
  • p.Ser388= Single submitter isolated microphthalmia 5
  • p.Ser404= Single submitter isolated microphthalmia 5
  • p.Ser450= Single submitter isolated microphthalmia 5
  • p.Ser46= Single submitter
  • p.Ser98= Single submitter isolated microphthalmia 5
  • p.Thr114= Single submitter isolated microphthalmia 5
  • p.Thr115= Single submitter isolated microphthalmia 5
  • p.Thr116= Single submitter isolated microphthalmia 5
  • p.Thr118= Single submitter
  • p.Thr127= Single submitter isolated microphthalmia 5
  • p.Thr143= Single submitter isolated microphthalmia 5
  • p.Thr410= Single submitter isolated microphthalmia 5
  • p.Tyr358= Single submitter isolated microphthalmia 5
  • p.Tyr479= Single submitter isolated microphthalmia 5
  • p.Val171= Single submitter isolated microphthalmia 5
  • p.Val194= Single submitter isolated microphthalmia 5
  • p.Val219= Single submitter isolated microphthalmia 5
  • p.Val333= Single submitter isolated microphthalmia 5
  • p.Val469= Single submitter isolated microphthalmia 5
  • p.Val500= Single submitter isolated microphthalmia 5
  • p.Val85= Single submitter isolated microphthalmia 5
  • p.Ala25= No assertion criteria MFRP-related disorder

Uncertain significance 339

Showing the top 300 by review status; the full set is in the sitemap.